Class FieldEff


  • public class FieldEff
    extends FieldSub
    An 'EFF' field form SnpEff: E.g.: 'EFF[2].GENE'
    Author:
    pablocingolani
    • Constructor Detail

      • FieldEff

        public FieldEff​(java.lang.String name,
                        Expression idxExpr,
                        org.snpeff.vcf.EffFormatVersion formatVersion,
                        java.lang.String fieldName)
        Constructor
        Parameters:
        formatVersion - : Can be null (it will be guessed)
    • Method Detail

      • getFieldString

        public java.lang.String getFieldString​(org.snpeff.vcf.VcfEntry vcfEntry)
        Get a field from VcfEntry
        Overrides:
        getFieldString in class FieldSub
      • getName

        public java.lang.String getName()
        Overrides:
        getName in class Field
      • getReturnType

        public org.snpeff.vcf.VcfInfoType getReturnType​(org.snpeff.vcf.VcfEntry vcfEntry)
      • toString

        public java.lang.String toString()
        Overrides:
        toString in class FieldSub