Package org.snpsift.annotate
Class AnnotateVcfDbTabix
- java.lang.Object
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- org.snpsift.annotate.AnnotateVcfDb
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- org.snpsift.annotate.AnnotateVcfDbTabix
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public class AnnotateVcfDbTabix extends AnnotateVcfDb
Annotate using a tabix indexed VCF "database"- Author:
- pcingola
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Field Summary
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Fields inherited from class org.snpsift.annotate.AnnotateVcfDb
annotateEmpty, chrPrev, dbVcf, debug, errCount, existsInfoField, hasVcfInfoPerAlleleRef, infoFields, MAX_ERRORS, prependInfoFieldName, useAllInfoFields, useId, useInfoFields, useRefAlt, vcfDbFile, vcfInfoPerAllele, vcfInfoPerAlleleRef, verbose
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Constructor Summary
Constructors Constructor Description AnnotateVcfDbTabix(java.lang.String dbFileName)
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Method Summary
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Methods inherited from class org.snpsift.annotate.AnnotateVcfDb
annotate, annotateExists, annotateIds, annotateInfo, close, discoverInfoFields, discoverInfoFields, find, find, findDbExists, findDbId, findDbInfo, findDbInfo, findDbInfoAlt, findDbInfoRef, match, open, prependInfoName, query, setAnnotateEmpty, setDebug, setExistsInfoField, setInfoFields, setPrependInfoFieldName, setUseId, setUseRefAlt, setVerbose, toString, uniqueIds, warn
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