Class TestCasesCaseControl


  • public class TestCasesCaseControl
    extends java.lang.Object
    Case control test cases
    Author:
    pcingola
    • Field Detail

      • verbose

        public static boolean verbose
      • debug

        public static boolean debug
    • Constructor Detail

      • TestCasesCaseControl

        public TestCasesCaseControl()
    • Method Detail

      • test_01

        public void test_01()
      • test_01_Str

        public void test_01_Str()
      • test_02

        public void test_02()
      • test_02_Str

        public void test_02_Str()
      • test_02_Str2

        public void test_02_Str2()
      • test_03

        public void test_03()
      • test_03_Str

        public void test_03_Str()
      • test_03_Str2

        public void test_03_Str2()
      • test_03_Str3

        public void test_03_Str3()
      • test_04

        public void test_04()
      • test_04_Str

        public void test_04_Str()
      • test_05

        public void test_05()
      • test_06

        public void test_06()
      • test_07

        public void test_07()
      • test_08

        public void test_08()
      • test_09

        public void test_09()
        Compare to results from PLINK using ChiSquare approximation
      • test_10

        public void test_10()
        Compare to results from PLINK using Fisher exact test

        Note: I use the rule of the thumb that Fisher exact test should be below 2 times Chi^2 estimation. This rule seems to work, at least for p-values in this example, which are between 10^-15 and 0.9