Class Summary


  • public class Summary
    extends java.lang.Object
    Summarize a VCF annotated file
    Author:
    pcingola
    • Constructor Summary

      Constructors 
      Constructor Description
      Summary()  
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void count​(java.lang.String group, java.lang.Boolean caseControl, org.snpeff.snpEffect.VariantEffect.FunctionalClass functClass, java.lang.String variantAf, int increment)  
      java.lang.String toString​(java.util.List<java.lang.String> groupNames)  
      java.lang.String toStringTitle​(java.util.List<java.lang.String> groupNames)  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • Summary

        public Summary()
    • Method Detail

      • count

        public void count​(java.lang.String group,
                          java.lang.Boolean caseControl,
                          org.snpeff.snpEffect.VariantEffect.FunctionalClass functClass,
                          java.lang.String variantAf,
                          int increment)
      • toString

        public java.lang.String toString​(java.util.List<java.lang.String> groupNames)
      • toStringTitle

        public java.lang.String toStringTitle​(java.util.List<java.lang.String> groupNames)