Package org.snpsift.gwasCatalog
Class GwasCatalogEntry
- java.lang.Object
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- org.snpsift.gwasCatalog.GwasCatalogEntry
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public class GwasCatalogEntry extends java.lang.Object
Entry from a GWAS-catalog References: http://www.genome.gov/gwastudies/#download http://www.genome.gov/Pages/About/OD/OPG/GWAS%20Catalog/Tab_delimited_column_descriptions_09_27.pdf- Author:
- pablocingolani
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Field Summary
Fields Modifier and Type Field Description java.lang.String
chrId
int
chrPos
java.lang.String
ci95
java.lang.String
cnv
java.lang.String
context
java.lang.String
date
java.lang.String
dateAddedtoCatalog
java.lang.String
downstreamGeneDistance
java.lang.String
downstreamGeneId
java.lang.String
firstAuthor
java.lang.String
initialSampleSize
java.lang.String
intergenic
java.lang.String
journal
java.lang.String
link
java.lang.String
mappedGene
java.lang.String
mappedTrait
java.lang.String
mappedTraitUri
java.lang.String
merged
java.lang.String
orBeta
java.lang.String
platform
java.lang.String
pubmedId
double
pValue
java.lang.String
pValueMlog
java.lang.String
pValueText
java.lang.String
region
java.lang.String
replicationSampleSize
java.lang.String
reportedGene
java.lang.String
riskAllele
java.lang.String
riskAlleleFrequency
java.lang.String
snpGeneIds
java.lang.String
snpIdCurrent
java.lang.String
snps
java.lang.String
study
java.lang.String
trait
java.lang.String
upstreamGeneDistance
java.lang.String
upstreamGeneId
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Constructor Summary
Constructors Constructor Description GwasCatalogEntry()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.lang.String
getTraitCode()
Trait as a 'code' (only alpha-num chars)java.lang.String
toString()
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Field Detail
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dateAddedtoCatalog
public java.lang.String dateAddedtoCatalog
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pubmedId
public java.lang.String pubmedId
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firstAuthor
public java.lang.String firstAuthor
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date
public java.lang.String date
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journal
public java.lang.String journal
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link
public java.lang.String link
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study
public java.lang.String study
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trait
public java.lang.String trait
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initialSampleSize
public java.lang.String initialSampleSize
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replicationSampleSize
public java.lang.String replicationSampleSize
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region
public java.lang.String region
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chrId
public java.lang.String chrId
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chrPos
public int chrPos
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reportedGene
public java.lang.String reportedGene
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mappedGene
public java.lang.String mappedGene
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upstreamGeneId
public java.lang.String upstreamGeneId
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downstreamGeneId
public java.lang.String downstreamGeneId
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snpGeneIds
public java.lang.String snpGeneIds
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upstreamGeneDistance
public java.lang.String upstreamGeneDistance
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downstreamGeneDistance
public java.lang.String downstreamGeneDistance
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riskAllele
public java.lang.String riskAllele
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snps
public java.lang.String snps
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merged
public java.lang.String merged
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snpIdCurrent
public java.lang.String snpIdCurrent
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context
public java.lang.String context
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intergenic
public java.lang.String intergenic
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riskAlleleFrequency
public java.lang.String riskAlleleFrequency
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pValue
public double pValue
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pValueMlog
public java.lang.String pValueMlog
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pValueText
public java.lang.String pValueText
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orBeta
public java.lang.String orBeta
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ci95
public java.lang.String ci95
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platform
public java.lang.String platform
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cnv
public java.lang.String cnv
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mappedTrait
public java.lang.String mappedTrait
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mappedTraitUri
public java.lang.String mappedTraitUri
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