Class CountVariant


  • public class CountVariant
    extends Function
    Count number of ALT samples
    Author:
    pablocingolani
    • Constructor Summary

      Constructors 
      Constructor Description
      CountVariant()  
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      Value eval​(org.snpeff.vcf.VcfEntry vcfEntry)
      Evaluate expression using VcfEntry
      Value eval​(org.snpeff.vcf.VcfGenotype vcfGenotype)
      Evaluate expression using genotype
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
    • Constructor Detail

      • CountVariant

        public CountVariant()
    • Method Detail

      • eval

        public Value eval​(org.snpeff.vcf.VcfEntry vcfEntry)
        Description copied from class: Expression
        Evaluate expression using VcfEntry
        Specified by:
        eval in class Expression
      • eval

        public Value eval​(org.snpeff.vcf.VcfGenotype vcfGenotype)
        Description copied from class: Expression
        Evaluate expression using genotype
        Specified by:
        eval in class Expression