SeqAn3
3.2.0
The Modern C++ library for sequence analysis.
- s -
sam_file_header() :
seqan3::sam_file_header< ref_ids_type >
sam_file_input() :
seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
sam_file_output() :
seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >
sam_record() :
seqan3::sam_record< field_types, field_ids >
score() :
scoring_scheme_for
,
seqan3::alignment_result< alignment_result_value_t >
,
seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
score_type() :
scoring_scheme_for
,
seqan3::align_cfg::score_type< score_t >
scoring_scheme() :
seqan3::align_cfg::scoring_scheme< scoring_scheme_t >
scoring_scheme_base() :
seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
search_result() :
seqan3::search_result< query_id_type, cursor_type, reference_id_type, reference_begin_position_type >
semialphabet_any() :
seqan3::semialphabet_any< size >
seq_alphabet() :
structure_file_input_traits
seq_container() :
structure_file_input_traits
seq_legal_alphabet() :
structure_file_input_traits
sequence() :
seqan3::sam_record< field_types, field_ids >
,
seqan3::sequence_record< field_types, field_ids >
,
seqan3::structure_record< field_types, field_ids >
sequence1_begin_position() :
seqan3::alignment_result< alignment_result_value_t >
sequence1_end_position() :
seqan3::alignment_result< alignment_result_value_t >
sequence1_id() :
seqan3::alignment_result< alignment_result_value_t >
sequence2_begin_position() :
seqan3::alignment_result< alignment_result_value_t >
sequence2_end_position() :
seqan3::alignment_result< alignment_result_value_t >
sequence2_id() :
seqan3::alignment_result< alignment_result_value_t >
sequence_alphabet() :
sam_file_input_traits
,
sequence_file_input_traits
sequence_container() :
sam_file_input_traits
,
sequence_file_input_traits
sequence_file_input() :
seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
sequence_file_output() :
seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >
sequence_legal_alphabet() :
sam_file_input_traits
,
sequence_file_input_traits
sequence_position() :
seqan3::sam_record< field_types, field_ids >
sequence_record() :
seqan3::sequence_record< field_types, field_ids >
sequence_structure() :
seqan3::structure_record< field_types, field_ids >
set() :
seqan3::dynamic_bitset< bit_capacity >
set_custom_matrix() :
seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
set_hamming_distance() :
seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
set_similarity_matrix() :
seqan3::aminoacid_scoring_scheme< score_type >
set_simple_scheme() :
seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
set_underlying_stream() :
seqan3::debug_stream_type< char_t >
setf() :
seqan3::debug_stream_type< char_t >
shape() :
seqan3::shape
shrink_to_fit() :
seqan3::bitpacked_sequence< alphabet_type >
,
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
,
seqan3::dynamic_bitset< bit_capacity >
,
seqan3::small_vector< value_type_, capacity_ >
size() :
seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
,
seqan3::bitpacked_sequence< alphabet_type >
,
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
,
seqan3::configuration< configs_t >
,
seqan3::dynamic_bitset< bit_capacity >
,
seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
,
seqan3::gap_decorator< inner_type >
,
seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type::binning_bitvector
,
seqan3::small_vector< value_type_, capacity_ >
,
seqan3::type_list< types >
small_string() :
seqan3::small_string< capacity_ >
small_vector() :
seqan3::small_vector< value_type_, capacity_ >
str() :
seqan3::small_string< capacity_ >
structure_alphabet() :
structure_file_input_traits
structure_container() :
structure_file_input_traits
structure_file_input() :
seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
structure_file_output() :
seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
structure_record() :
seqan3::structure_record< field_types, field_ids >
structured_aa() :
seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >
structured_rna() :
seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >
suffix_array_interval() :
seqan3::fm_index_cursor< index_t >
swap() :
seqan3::bitpacked_sequence< alphabet_type >
,
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
,
seqan3::dynamic_bitset< bit_capacity >
,
seqan3::small_vector< value_type_, capacity_ >
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