Needle
An application for fast and efficient searches of NGS data.
estimate.h
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1// -----------------------------------------------------------------------------------------------------
2// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin
3// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik
4// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5// shipped with this file and also available at: https://github.com/seqan/needle/blob/master/LICENSE.md
6// -----------------------------------------------------------------------------------------------------
7
8#pragma once
9
10#include <filesystem>
11
12#include "shared.h"
13
22{
23 std::filesystem::path search_file;
24 std::filesystem::path path_in{"./"};
25 // false: no normalization method, true: division by first expression value
27};
28
33void call_estimate(estimate_ibf_arguments & args, estimate_arguments & estimate_args);
void call_estimate(estimate_ibf_arguments &args, estimate_arguments &estimate_args)
Function, which calls the estimate function.
Definition: estimate.cpp:253
The arguments necessary for a search.
Definition: estimate.h:22
bool normalization_method
Definition: estimate.h:26
std::filesystem::path path_in
Definition: estimate.h:24
std::filesystem::path search_file
Definition: estimate.h:23
arguments used for estimate, ibf, ibfmin
Definition: shared.h:41