Needle
An application for fast and efficient searches of NGS data.
- a -
add_executable() :
CMakeLists.txt
- c -
calculate_cutoff() :
ibf.cpp
calculate_minimiser() :
ibf.cpp
call_estimate() :
estimate.h
,
estimate.cpp
check_cutoffs_samples() :
ibf.cpp
check_expression() :
ibf.cpp
check_for_fasta_format() :
ibf.cpp
check_fpr() :
ibf.cpp
check_ibf() :
estimate.cpp
cmake_minimum_required() :
CMakeLists.txt
count() :
ibf.h
,
ibf.cpp
- e -
estimate() :
estimate.cpp
- f -
fill_hash_table() :
ibf.cpp
- g -
get_expression_thresholds() :
ibf.cpp
get_filsize_per_expression_level() :
ibf.cpp
get_include_set_table() :
ibf.cpp
- i -
ibf() :
ibf.h
,
ibf.cpp
ibf_helper() :
ibf.cpp
initialise_arguments_ibf() :
main.cpp
initialise_arguments_minimiser() :
main.cpp
initialise_min_arguments() :
main.cpp
- l -
load_ibf() :
shared.h
- m -
main() :
main.cpp
minimiser() :
ibf.h
,
ibf.cpp
- p -
parsing() :
main.cpp
- r -
read_binary() :
ibf.h
,
ibf.cpp
read_binary_start() :
ibf.h
,
ibf.cpp
read_input_file_list() :
main.cpp
read_levels() :
estimate.cpp
run_needle_count() :
main.cpp
run_needle_estimate() :
main.cpp
run_needle_ibf() :
main.cpp
run_needle_ibf_min() :
main.cpp
run_needle_minimiser() :
main.cpp
- s -
store_ibf() :
shared.h
- t -
target_link_libraries() :
CMakeLists.txt
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