Class GcBiasUtils


  • public class GcBiasUtils
    extends Object
    Utilities to calculate GC Bias Created by kbergin on 9/23/15.
    • Constructor Detail

      • GcBiasUtils

        public GcBiasUtils()
    • Method Detail

      • calculateGc

        public static int calculateGc​(byte[] bases,
                                      int startIndex,
                                      int endIndex,
                                      picard.analysis.GcBiasUtils.CalculateGcState state)
      • calculateRefWindowsByGc

        public static int[] calculateRefWindowsByGc​(int windows,
                                                    File referenceSequence,
                                                    int windowSize)
      • calculateAllGcs

        public static byte[] calculateAllGcs​(byte[] refBases,
                                             int lastWindowStart,
                                             int windowSize)