Class CollectQualityYieldMetrics.QualityYieldMetricsFlow

    • Field Detail

      • READ_LENGTH_AVG_Q_ABOVE_30

        public long READ_LENGTH_AVG_Q_ABOVE_30
        The length of the longest interval on the reads where the average quality per-base is above (Q30)
      • READ_LENGTH_AVG_Q_ABOVE_25

        public long READ_LENGTH_AVG_Q_ABOVE_25
        The length of the longest interval on the reads where the average quality per-base is above (Q25)
      • histogramGenerator

        protected final picard.analysis.HistogramGenerator histogramGenerator
    • Constructor Detail

      • QualityYieldMetricsFlow

        public QualityYieldMetricsFlow()
      • QualityYieldMetricsFlow

        public QualityYieldMetricsFlow​(boolean useOriginalBaseQualities)
      • QualityYieldMetricsFlow

        public QualityYieldMetricsFlow​(boolean useOriginalBaseQualities,
                                       picard.analysis.HistogramGenerator hg)