Class InsertSizeMetricsCollector.PerUnitInsertSizeMetricsCollector

    • Constructor Detail

      • PerUnitInsertSizeMetricsCollector

        public PerUnitInsertSizeMetricsCollector​(String sample,
                                                 String library,
                                                 String readGroup)
    • Method Detail

      • acceptRecord

        public void acceptRecord​(picard.analysis.directed.InsertSizeCollectorArgs args)
        Description copied from interface: PerUnitMetricCollector
        Add a SAMRecord (with ReferenceSequence and Read Group info) to the metric(s) being calculated)
        Specified by:
        acceptRecord in interface PerUnitMetricCollector<InsertSizeMetrics,​Integer,​picard.analysis.directed.InsertSizeCollectorArgs>
        Parameters:
        args - Contains SAMRecord, SAMReadGroupRecord, ReferenceSequence of current record and any previously computed values that might be needed for this class
      • getTotalInserts

        public double getTotalInserts()