Package picard.illumina
Class LanePhasingMetricsCollector
- java.lang.Object
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- picard.illumina.LanePhasingMetricsCollector
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public class LanePhasingMetricsCollector extends Object
Helper class used to transform tile data for a lane into a collection of IlluminaPhasingMetrics
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Constructor Summary
Constructors Constructor Description LanePhasingMetricsCollector(Collection<Tile> laneTiles, boolean usePercentage)
Constructor takes a lane's collection of Tiles and calculates the median phasing/prephasing for the first and second (if available) reads
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description Map<TileTemplateRead,Float>
getMedianPhasingMap()
Map<TileTemplateRead,Float>
getMedianPrePhasingMap()
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Constructor Detail
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LanePhasingMetricsCollector
public LanePhasingMetricsCollector(Collection<Tile> laneTiles, boolean usePercentage)
Constructor takes a lane's collection of Tiles and calculates the median phasing/prephasing for the first and second (if available) reads
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Method Detail
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getMedianPhasingMap
public Map<TileTemplateRead,Float> getMedianPhasingMap()
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getMedianPrePhasingMap
public Map<TileTemplateRead,Float> getMedianPrePhasingMap()
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