Class Build37ExtendedIlluminaManifestRecord


  • public class Build37ExtendedIlluminaManifestRecord
    extends IlluminaManifestRecord
    A class to represent a record (line) from an Extended Illumina Manifest [Assay] entry
    • Method Detail

      • getAlleleA

        public htsjdk.variant.variantcontext.Allele getAlleleA()
      • getAlleleB

        public htsjdk.variant.variantcontext.Allele getAlleleB()
      • getRefAllele

        public htsjdk.variant.variantcontext.Allele getRefAllele()
      • getReferenceStrand

        public htsjdk.tribble.annotation.Strand getReferenceStrand()
      • getB37Chr

        public String getB37Chr()
      • getB37Pos

        public Integer getB37Pos()
      • getSnpRefAllele

        public String getSnpRefAllele()
      • getSnpAlleleA

        public String getSnpAlleleA()
      • getSnpAlleleB

        public String getSnpAlleleB()
      • getRsId

        public String getRsId()
      • setRsId

        public void setRsId​(String rsId)
      • setDupe

        public void setDupe​(boolean isDupe)