Class Hierarchy
- java.lang.Object
- picard.illumina.BarcodeExtractor
- picard.illumina.BarcodeExtractor.BarcodeMatch
- picard.illumina.BasecallsConverter<CLUSTER_OUTPUT_RECORD>
- picard.illumina.SortedBasecallsConverter<CLUSTER_OUTPUT_RECORD>
- picard.illumina.UnsortedBasecallsConverter<CLUSTER_OUTPUT_RECORD>
- picard.illumina.BasecallsConverterBuilder<CLUSTER_OUTPUT_RECORD>
- picard.illumina.ClusterDataToSamConverter (implements picard.illumina.BasecallsConverter.ClusterDataConverter<OUTPUT_RECORD>)
- picard.illumina.CollectIlluminaLaneMetrics.IlluminaLaneMetricsCollector
- picard.cmdline.CommandLineProgram
- picard.illumina.CheckIlluminaDirectory
- picard.illumina.CollectIlluminaBasecallingMetrics
- picard.illumina.CollectIlluminaLaneMetrics
- picard.illumina.ExtractBarcodesProgram
- picard.illumina.ExtractIlluminaBarcodes
- picard.illumina.IlluminaBasecallsToFastq
- picard.illumina.IlluminaBasecallsToSam
- picard.illumina.MarkIlluminaAdapters
- picard.illumina.ExtractIlluminaBarcodes.PerTileBarcodeExtractor (implements java.lang.Runnable)
- picard.illumina.LanePhasingMetricsCollector
- htsjdk.samtools.metrics.MetricBase
- picard.illumina.BarcodeMetric
- picard.illumina.IlluminaBasecallingMetrics
- picard.illumina.IlluminaLaneMetrics
- picard.illumina.IlluminaPhasingMetrics
Interface Hierarchy
- java.lang.AutoCloseable
- java.io.Closeable
- htsjdk.io.Writer<A>
- picard.illumina.BasecallsConverter.ConvertedClusterDataWriter<OUTPUT_RECORD>
- htsjdk.io.Writer<A>
- java.io.Closeable
- picard.illumina.BasecallsConverter.ClusterDataConverter<OUTPUT_RECORD>
Enum Hierarchy
- java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
- picard.illumina.DistanceMetric (implements org.broadinstitute.barclay.argparser.CommandLineParser.ClpEnum)
- picard.illumina.IlluminaBasecallsToFastq.ReadNameFormat
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)