Package picard.fingerprint
Class CrosscheckMetric
- java.lang.Object
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- htsjdk.samtools.metrics.MetricBase
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- picard.fingerprint.CrosscheckMetric
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- Direct Known Subclasses:
ClusteredCrosscheckMetric
public class CrosscheckMetric extends htsjdk.samtools.metrics.MetricBase
A class to hold the result of crosschecking fingerprints. The same metric will be used for crosschecking Readgroups, libraries, samples, or files.
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Nested Class Summary
Nested Classes Modifier and Type Class Description static class
CrosscheckMetric.DataType
static class
CrosscheckMetric.FingerprintResult
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Field Summary
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Constructor Summary
Constructors Constructor Description CrosscheckMetric()
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Field Detail
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LEFT_GROUP_VALUE
public String LEFT_GROUP_VALUE
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RIGHT_GROUP_VALUE
public String RIGHT_GROUP_VALUE
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RESULT
public CrosscheckMetric.FingerprintResult RESULT
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DATA_TYPE
public CrosscheckMetric.DataType DATA_TYPE
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LOD_SCORE
public Double LOD_SCORE
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LOD_SCORE_TUMOR_NORMAL
public Double LOD_SCORE_TUMOR_NORMAL
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LOD_SCORE_NORMAL_TUMOR
public Double LOD_SCORE_NORMAL_TUMOR
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LEFT_RUN_BARCODE
public String LEFT_RUN_BARCODE
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LEFT_LANE
public Integer LEFT_LANE
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LEFT_MOLECULAR_BARCODE_SEQUENCE
public String LEFT_MOLECULAR_BARCODE_SEQUENCE
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LEFT_LIBRARY
public String LEFT_LIBRARY
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LEFT_SAMPLE
public String LEFT_SAMPLE
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LEFT_FILE
public String LEFT_FILE
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RIGHT_RUN_BARCODE
public String RIGHT_RUN_BARCODE
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RIGHT_LANE
public Integer RIGHT_LANE
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RIGHT_MOLECULAR_BARCODE_SEQUENCE
public String RIGHT_MOLECULAR_BARCODE_SEQUENCE
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RIGHT_LIBRARY
public String RIGHT_LIBRARY
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RIGHT_SAMPLE
public String RIGHT_SAMPLE
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RIGHT_FILE
public String RIGHT_FILE
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