Class IlluminaManifestRecord

    • Method Detail

      • getLine

        public String getLine()
      • getIlmnId

        public String getIlmnId()
      • getName

        public String getName()
      • getSnp

        public String getSnp()
      • isIndel

        public boolean isIndel()
      • isAmbiguous

        public boolean isAmbiguous()
      • isSnp

        public boolean isSnp()
      • getAddressAId

        public String getAddressAId()
      • getAlleleAProbeSeq

        public String getAlleleAProbeSeq()
      • getAddressBId

        public String getAddressBId()
      • getAlleleBProbeSeq

        public String getAlleleBProbeSeq()
      • getGenomeBuild

        public String getGenomeBuild()
      • getMajorGenomeBuild

        public String getMajorGenomeBuild()
      • getHgGenomeBuild

        public String getHgGenomeBuild()
      • setHgGenomeBuild

        public void setHgGenomeBuild​(String hgGenomeBuild)
      • getChr

        public String getChr()
      • getPosition

        public int getPosition()
      • getPloidy

        public String getPloidy()
      • getSpecies

        public String getSpecies()
      • getSource

        public String getSource()
      • getSourceVersion

        public String getSourceVersion()
      • getSourceSeq

        public String getSourceSeq()
      • getTopGenomicSeq

        public String getTopGenomicSeq()
      • getBeadSetId

        public int getBeadSetId()
      • getExpClusters

        public String getExpClusters()
      • getRefStrand

        public htsjdk.tribble.annotation.Strand getRefStrand()
      • getIntensityOnly

        public boolean getIntensityOnly()
      • getIndex

        public int getIndex()