Package picard.vcf

Class GenotypeConcordanceStates


  • public class GenotypeConcordanceStates
    extends Object
    A class to store the various classifications for: 1. a truth genotype versus a reference 2. a call genotype versus a truth, relative to a reference An example use of this class is to have one instance per following use case: - SNPs - indels - filtered variant (truth or call) - filtered genotype (truth or call) - low GQ (call) - low DP (call) - No call (truth or call) - No variant (truth or call) *
    • Constructor Detail

      • GenotypeConcordanceStates

        public GenotypeConcordanceStates()