Package picard.fingerprint
Class FingerprintUtils.VariantContextSet
- java.lang.Object
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- java.util.AbstractCollection<E>
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- java.util.AbstractSet<E>
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- java.util.TreeSet<htsjdk.variant.variantcontext.VariantContext>
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- picard.fingerprint.FingerprintUtils.VariantContextSet
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- All Implemented Interfaces:
Serializable
,Cloneable
,Iterable<htsjdk.variant.variantcontext.VariantContext>
,Collection<htsjdk.variant.variantcontext.VariantContext>
,NavigableSet<htsjdk.variant.variantcontext.VariantContext>
,Set<htsjdk.variant.variantcontext.VariantContext>
,SortedSet<htsjdk.variant.variantcontext.VariantContext>
- Enclosing class:
- FingerprintUtils
public static class FingerprintUtils.VariantContextSet extends TreeSet<htsjdk.variant.variantcontext.VariantContext>
A class that holds VariantContexts sorted by genomic position- See Also:
- Serialized Form
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Method Summary
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Methods inherited from class java.util.TreeSet
add, addAll, ceiling, clear, clone, comparator, contains, descendingIterator, descendingSet, first, floor, headSet, headSet, higher, isEmpty, iterator, last, lower, pollFirst, pollLast, remove, size, spliterator, subSet, subSet, tailSet, tailSet
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Methods inherited from class java.util.AbstractSet
equals, hashCode, removeAll
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Methods inherited from class java.util.AbstractCollection
containsAll, retainAll, toArray, toArray, toString
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Methods inherited from class java.lang.Object
finalize, getClass, notify, notifyAll, wait, wait, wait
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Methods inherited from interface java.util.Collection
parallelStream, removeIf, stream, toArray
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