Class CollectQualityYieldMetrics.QualityYieldMetricsCollector

    • Field Detail

      • includeSupplementalAlignments

        public final boolean includeSupplementalAlignments
    • Constructor Detail

      • QualityYieldMetricsCollector

        public QualityYieldMetricsCollector​(boolean useOriginalQualities,
                                            boolean includeSecondaryAlignments,
                                            boolean includeSupplementalAlignments)
    • Method Detail

      • acceptRecord

        public void acceptRecord​(htsjdk.samtools.SAMRecord rec,
                                 htsjdk.samtools.reference.ReferenceSequence ref)
      • finish

        public void finish()