Package picard.analysis
Class RrbsCpgDetailMetrics
- java.lang.Object
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- htsjdk.samtools.metrics.MetricBase
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- picard.metrics.MultilevelMetrics
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- picard.analysis.RrbsCpgDetailMetrics
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@DocumentedFeature(groupName="Metrics", summary="Metrics") public final class RrbsCpgDetailMetrics extends MultilevelMetrics
Holds information about CpG sites encountered for RRBS processing QC
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Field Summary
Fields Modifier and Type Field Description Integer
CONVERTED_SITES
Number of times this CpG site was converted (TG for + strand, CA for - strand)Double
PCT_CONVERTED
CpG CONVERTED_BASES / CpG TOTAL_BASES (fraction)Integer
POSITION
Position within the sequence of the CpG siteString
SEQUENCE_NAME
Sequence the CpG is seen inInteger
TOTAL_SITES
Number of times this CpG site was encountered-
Fields inherited from class picard.metrics.MultilevelMetrics
LIBRARY, READ_GROUP, SAMPLE
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Constructor Summary
Constructors Constructor Description RrbsCpgDetailMetrics()
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Field Detail
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SEQUENCE_NAME
public String SEQUENCE_NAME
Sequence the CpG is seen in
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POSITION
public Integer POSITION
Position within the sequence of the CpG site
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TOTAL_SITES
public Integer TOTAL_SITES
Number of times this CpG site was encountered
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CONVERTED_SITES
public Integer CONVERTED_SITES
Number of times this CpG site was converted (TG for + strand, CA for - strand)
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PCT_CONVERTED
public Double PCT_CONVERTED
CpG CONVERTED_BASES / CpG TOTAL_BASES (fraction)
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