Package picard.arrays

Class BafRegressMetrics


  • @DocumentedFeature(groupName="Metrics",
                       summary="Metrics")
    public class BafRegressMetrics
    extends htsjdk.samtools.metrics.MetricBase
    • Field Summary

      Fields 
      Modifier and Type Field Description
      double CALL_RATE
      The call rate of the sample (number of non-missing genotypes)
      double ESTIMATE
      The estimate of contamination from the model (on the 0.0-1.0 scale)
      double LOG10_PVAL
      The log p-value of the estimate
      int NHOM
      The number of homozygous genotypes used to fit the model
      double PVAL
      The p-value of the estimate
      String SAMPLE
      The sample name
      double STDERR
      The standard error of the estimate
      double TVAL
      The test statistic for the estimate
    • Field Detail

      • SAMPLE

        public String SAMPLE
        The sample name
      • ESTIMATE

        public double ESTIMATE
        The estimate of contamination from the model (on the 0.0-1.0 scale)
      • STDERR

        public double STDERR
        The standard error of the estimate
      • TVAL

        public double TVAL
        The test statistic for the estimate
      • PVAL

        public double PVAL
        The p-value of the estimate
      • LOG10_PVAL

        public double LOG10_PVAL
        The log p-value of the estimate
      • CALL_RATE

        public double CALL_RATE
        The call rate of the sample (number of non-missing genotypes)
      • NHOM

        public int NHOM
        The number of homozygous genotypes used to fit the model
    • Constructor Detail

      • BafRegressMetrics

        public BafRegressMetrics()