Package picard.analysis
Class CollectWgsMetrics.CollectWgsMetricsIntervalArgumentCollection
- java.lang.Object
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- picard.analysis.CollectWgsMetrics.CollectWgsMetricsIntervalArgumentCollection
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- All Implemented Interfaces:
IntervalArgumentCollection
- Enclosing class:
- CollectWgsMetrics
public static class CollectWgsMetrics.CollectWgsMetricsIntervalArgumentCollection extends Object implements IntervalArgumentCollection
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Constructor Summary
Constructors Constructor Description CollectWgsMetricsIntervalArgumentCollection()
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Field Detail
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INTERVALS
@Argument(doc="An interval list file that contains the positions to restrict the assessment. Please note that all bases of reads that overlap these intervals will be considered, even if some of those bases extend beyond the boundaries of the interval. The ideal use case for this argument is to use it to restrict the calculation to a subset of (whole) contigs.", optional=true) public File INTERVALS
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Method Detail
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getIntervalFile
public File getIntervalFile()
- Specified by:
getIntervalFile
in interfaceIntervalArgumentCollection
- Returns:
- The interval file provided by the user, if any, or the default, if any.
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