Package picard.sam
Enum RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile
- java.lang.Object
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- java.lang.Enum<RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile>
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- picard.sam.RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile
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- All Implemented Interfaces:
Serializable
,Comparable<RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile>
- Enclosing class:
- RevertOriginalBaseQualitiesAndAddMateCigar
public static enum RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile extends Enum<RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile>
Used as a return for the canSkipSAMFile function.
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Enum Constant Summary
Enum Constants Enum Constant Description CAN_SKIP
CANNOT_SKIP_FOUND_NO_MC
CANNOT_SKIP_FOUND_OQ
FOUND_NO_EVIDENCE
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
canSkip()
String
getMessage(int maxRecordsToExamine)
static RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile
valueOf(String name)
Returns the enum constant of this type with the specified name.static RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile[]
values()
Returns an array containing the constants of this enum type, in the order they are declared.
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Enum Constant Detail
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CAN_SKIP
public static final RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile CAN_SKIP
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CANNOT_SKIP_FOUND_OQ
public static final RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile CANNOT_SKIP_FOUND_OQ
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CANNOT_SKIP_FOUND_NO_MC
public static final RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile CANNOT_SKIP_FOUND_NO_MC
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FOUND_NO_EVIDENCE
public static final RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile FOUND_NO_EVIDENCE
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Method Detail
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values
public static RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:for (RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile c : RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile.values()) System.out.println(c);
- Returns:
- an array containing the constants of this enum type, in the order they are declared
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valueOf
public static RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is null
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getMessage
public String getMessage(int maxRecordsToExamine)
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canSkip
public boolean canSkip()
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