Class TargetMetricsBase

  • Direct Known Subclasses:
    TargetedPcrMetrics, TargetMetrics

    public class TargetMetricsBase
    extends PanelMetricsBase
    TargetMetrics, are metrics to measure how well we hit specific targets (or baits) when using a targeted sequencing process like hybrid selection or Targeted PCR Techniques (TSCA). TargetMetrics at the moment are the metrics that are shared by both HybridSelection and TargetedPcrMetrics.
    • Field Detail

      • PF_SELECTED_PAIRS

        public long PF_SELECTED_PAIRS
        Tracks the number of read pairs that we see that are PF (used to calculate library size)
      • PF_SELECTED_UNIQUE_PAIRS

        public long PF_SELECTED_UNIQUE_PAIRS
        Tracks the number of unique PF_SELECTED_PAIRS we see (used to calc library size)
      • ON_TARGET_FROM_PAIR_BASES

        public long ON_TARGET_FROM_PAIR_BASES
        The number of PF aligned bases that are mapped in pair to a targeted region of the genome.
    • Constructor Detail

      • TargetMetricsBase

        public TargetMetricsBase()