libSBML C API  libSBML 5.20.2 C API
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[detail level 123456]
  src
  sbml
  annotation
 CVTerm.cppCVTerm_t I/O
 CVTerm.hDefinition of a CVTerm_t class for adding annotations to a Model_t
 Date.cppDate_t I/O
 Date.hDate_t I/O
 ModelCreator.cppModelCreator_t I/O
 ModelCreator.hModelCreator_t I/O
 ModelHistory.cppModelHistory_t I/O
 ModelHistory.hModelHistory_t I/O
 RDFAnnotation.hRDFAnnotation I/O
 RDFAnnotationParser.cppRDFAnnotation I/O
 RDFAnnotationParser.hRDFAnnotation I/O
  common
 common-documentation.hCommon text fragments used throughout libSBML's code documentation
 common-sbmlerror-codes.h
 common.hCommon functions and macros for C and C++
 extern.hDefinitions of LIBSBML_EXTERN and related things
 libsbml-config.hDecides whether to #include Unix or Windows configuration variables
 libsbml-version.cppDefine libSBML version numbers for access from client software
 libsbml-version.hDefine libSBML version numbers for access from client software
 operationReturnValues.cppEnumeration of values returned by operations within libSBML
 operationReturnValues.hEnumeration of values returned by operations within libSBML
  conversion
 ConversionOption.cppImplementation of ConversionOption_t, the class encapsulating conversion options
 ConversionOption.hDefinition of ConversionOption_t, the class encapsulating conversion options
 ConversionProperties.cppImplemenentation of ConversionProperties_t, the class encapsulating conversion configuration
 ConversionProperties.hDefinition of ConversionProperties_t, the class encapsulating conversion configuration
 ExpressionAnalyser.cppImplementation of ExpressionAnalyser_t
 ExpressionAnalyser.hDefinition of ExpressionAnalyser_t, a class for analysing expressions
 RegisterConverters.cppRegisters all available converters
 SBMLConverter.cppImplementation of SBMLConverter_t, the base class of package extensions
 SBMLConverter.hDefinition of SBMLConverter_t, the base class for SBML conversion
 SBMLConverterRegister.h
 SBMLConverterRegistry.cppImplementation of SBMLConverterRegistry_t, a registry of available converters
 SBMLConverterRegistry.hDefinition of SBMLConverterRegistry_t, a registry of available converters
 SBMLConverterTypes.hDefinition of SBMLConverterTypes
 SBMLFunctionDefinitionConverter.cppImplementation of SBMLFunctionDefinitionConverter_t, a converter replacing function definitions
 SBMLFunctionDefinitionConverter.hDefinition of SBMLFunctionDefinitionConverter_t, a converter replacing function definitions
 SBMLIdConverter.cppImplementation of SBMLIdConverter_t, a converter renaming SIds
 SBMLIdConverter.hDefinition of SBMLIdConverter_t, a converter renaming SIds
 SBMLInferUnitsConverter.cppImplementation of SBMLInferUnitsConverter_t
 SBMLInferUnitsConverter.hDefinition of SBMLInferUnitsConverter_t, infers units for parameters
 SBMLInitialAssignmentConverter.cppImplementation of SBMLInitialAssignmentConverter_t, a converter inlining initial assignments
 SBMLInitialAssignmentConverter.hDefinition of SBMLInitialAssignmentConverter_t, a converter inlining function definitions
 SBMLLevel1Version1Converter.cppImplementation of SBMLLevel1Version1Converter_t
 SBMLLevel1Version1Converter.hDefinition of SBMLLevel1Version1Converter_t
 SBMLLevelVersionConverter.cppImplementation of SBMLLevelVersionConverter_t, the base class of package extensions
 SBMLLevelVersionConverter.hDefinition of SBMLLevelVersionConverter_t, the base class for SBML conversion
 SBMLLocalParameterConverter.cppImplementation of SBMLLocalParameterConverter_t, a converter replacing local parameters with global ones
 SBMLLocalParameterConverter.hDefinition of SBMLLocalParameterConverter_t, a converter replacing local parameters with global ones
 SBMLRateOfConverter.cppImplementation of SBMLRateOfConverter_t, a converter changing 'rateOf' into functionDefinition
 SBMLRateOfConverter.hDefinition of SBMLRateOfConverter_t, a converter changing reactions into rate rules
 SBMLRateRuleConverter.cppImplementation of SBMLRateRuleConverter_t, a converter from raterule to reaction
 SBMLRateRuleConverter.hDefinition of SBMLRateRuleConverter_t, a converter from raterule to reaction
 SBMLReactionConverter.cppImplementation of SBMLReactionConverter_t, a converter changing reactions into rate rules
 SBMLReactionConverter.hDefinition of SBMLReactionConverter_t, a converter changing reactions into rate rules
 SBMLRuleConverter.cppImplementation of SBMLRuleConverter_t, a converter sorting rules
 SBMLRuleConverter.hDefinition of SBMLRuleConverter_t, a converter sorting rules
 SBMLStripPackageConverter.cppImplementation of SBMLStripPackageConverter_t, the base class of package extensions
 SBMLStripPackageConverter.hDefinition of SBMLStripPackageConverter_t, the base class for SBML conversion
 SBMLUnitsConverter.cppImplementation of SBMLUnitsConverter_t, for converting units to SI
 SBMLUnitsConverter.hDefinition of SBMLUnitsConverter_t, for converting units to SI
  extension
 ASTBasePlugin.cpp
 ASTBasePlugin.h
 ISBMLExtensionNamespaces.cpp
 ISBMLExtensionNamespaces.h
 SBaseExtensionPoint.cppImplementation of SBaseExtensionPoint_t
 SBaseExtensionPoint.hDefinition of SBaseExtensionPoint_t
 SBasePlugin.cppImplementation of SBasePlugin_t, the base class of extension entities plugged in SBase_t derived classes in the SBML Core package
 SBasePlugin.hDefinition of SBasePlugin_t, the base class of extension entities plugged in SBase_t derived classes in the SBML Core package
 SBasePluginCreator.hTemplate class for SBasePlugin_t-based classes
 SBasePluginCreatorBase.cppImplementation of SBasePluginCreatorBase_t, the base class of SBasePlugin_t creator classes
 SBasePluginCreatorBase.hDefinition of SBasePluginCreatorBase_t, the base class of SBasePlugin_t creator classes
 SBMLDocumentPlugin.cppImplementation of SBMLDocumentPlugin_t, the derived class of SBasePlugin_t
 SBMLDocumentPlugin.hDefinition of SBMLDocumentPlugin_t, the derived class of SBasePlugin_t
 SBMLDocumentPluginNotRequired.cppImplementation of SBMLDocumentPluginNotRequired_t, the plugin class of layout package for the Model_t element
 SBMLDocumentPluginNotRequired.hDefinition of SBMLDocumentPluginNotRequired_t, the plugin class of layout package for the SBMLDocument_t element, whose 'required' attribute must be 'false'
 SBMLExtension.cppImplementation of SBMLExtension_t, the base class of package extensions
 SBMLExtension.hDefinition of SBMLExtension_t, the core component of SBML package extension
 SBMLExtensionException.cppSBMLExtensionException_t class, the exception class for package extension
 SBMLExtensionException.hClass of exceptions thrown in some situations
 SBMLExtensionNamespaces.cppImplementation of C-API for the SBMLExtensionNamespaces_t class
 SBMLExtensionNamespaces.hClass to store the SBML Level, Version and namespace of a package
 SBMLExtensionRegister.hTemplate class for registering extension packages
 SBMLExtensionRegistry.cppImplementation of SBMLExtensionRegistry_t, the registry class in which extension packages are registered
 SBMLExtensionRegistry.hThe registry class for tracking package extensions
  math
 ASTNode.cppAbstract Syntax Tree (AST) for representing formula trees
 ASTNode.hAbstract Syntax Tree (AST) for representing formula trees
 ASTNodeType.hEnumeration for Abstract Syntax Tree (AST)
 DefinitionURLRegistry.cppImplementation of DefinitionURLRegistry_t, a registry of available DefinitionURLs
 DefinitionURLRegistry.hDefinition of DefinitionURLRegistry_t, a registry of available DefinitionURLs
 FormulaFormatter.cppFormats an AST formula tree as an SBML formula string
 FormulaFormatter.hFormats an AST formula tree as an SBML formula string
 FormulaParser.cppParses an SBML formula string into an AST
 FormulaParser.hParses an SBML formula string into an AST
 FormulaTokenizer.cppTokenizes an SBML formula string
 FormulaTokenizer.hTokenizes an SBML formula string
 L3FormulaFormatter.cppFormats an AST formula tree as an SBML L3 formula string
 L3FormulaFormatter.hFormats an L3 AST formula tree as an SBML formula string
 L3Parser.cpp
 L3Parser.hDefinition of the level 3 infix-to-mathml parser C functions
 L3ParserSettings.cppDefinition of the level 3 infix-to-mathml parser settings
 L3ParserSettings.hDefinition of the level 3 infix-to-mathml parser settings
 MathML.cppUtilities for reading and writing MathML to/from text strings
 MathML.hUtilities for reading and writing MathML to/from text strings
  packages
  comp
  common
 CompExtensionTypes.hInclude all SBML types of Comp extension in a single header file
  extension
 CompExtension.cppImplementation of CompExtension_t, the core module of comp package
 CompExtension.hDefinition of CompExtension_t, the core module of comp package
 CompModelPlugin.cppImplementation of CompModelPlugin_t, the plugin class of comp package for the SBase_t element
 CompModelPlugin.hDefinition of CompModelPlugin_t, the plugin class of comp package for the Model_t element
 CompSBasePlugin.cppImplementation of CompSBasePlugin_t, the plugin class of comp package for the SBase_t element
 CompSBasePlugin.hDefinition of CompSBasePlugin_t, the plugin class of comp package for the Model_t element
 CompSBMLDocumentPlugin.cppImplementation of CompSBMLDocumentPlugin_t, the plugin class of comp package for the SBase_t element
 CompSBMLDocumentPlugin.hDefinition of CompSBMLDocumentPlugin_t, the plugin class of comp package for the Model_t element
  sbml
 CompBase.cppImplementation of CompBase_t, the base class of extension entities plugged in SBase_t derived classes in the SBML Core package
 CompBase.hDefinition of CompBase_t, the base class of extension entities plugged in SBase_t derived classes in the SBML Core package
 Deletion.cppImplementation of Deletion_t, the SBaseRef_t derived class of deletions package
 Deletion.hDefinition of Deletion_t, the SBase_t derived class of deletions package
 ExternalModelDefinition.cppImplementation of ExternalModelDefinition_t, the SBase_t-derived class of the comp package
 ExternalModelDefinition.hDefinition of ExternalModelDefinition_t, the SBase_t derived class of the comp package
 ListOfDeletions.cppImplementation of ListOfDeletions_t
 ListOfDeletions.hDefinition of ListOfDeletions_t, the SBase_t derived class of deletions package
 ListOfExternalModelDefinitions.cppImplementation of ListOfExternalModelDefinitions_t
 ListOfExternalModelDefinitions.hDefinition of ListOfExternalModelDefinitions_t, the SBase_t derived class of the Hierarchial Model Defintions package
 ListOfModelDefinitions.cppImplementation of ListOfModelDefinitions_t from the comp package
 ListOfModelDefinitions.hDefinition of ListOfModelDefinitions_t, the SBase_t derived class of modelDefinitions package
 ListOfPorts.cppImplementation of ListOfPorts_t
 ListOfPorts.hDefinition of ListOfPorts_t, the SBase_t derived class of ports package
 ListOfReplacedElements.cppImplementation of ListOfReplacedElements_t from the comp package
 ListOfReplacedElements.hDefinition of ListOfReplacedElements_t, the SBase_t derived class of replacedElements package
 ListOfSubmodels.cppImplementation of ListOfSubmodels_t
 ListOfSubmodels.hDefinition of ListOfSubmodels_t, the SBase_t derived class of submodels package
 ModelDefinition.cppImplementation of ModelDefinition_t, the SBase_t-derived class of the comp package
 ModelDefinition.hDefinition of ModelDefinition_t, the SBase_t derived class of the comp package
 Port.cppImplementation of Port_t, the SBase_t-derived class of the comp package
 Port.hDefinition of Port_t, the SBase_t derived class of the comp package
 ReplacedBy.cppImplementation of ReplacedBy_t, the SBaseRef_t derived class of the comp package
 ReplacedBy.hDefinition of ReplacedBy_t, the Replacing_t-derived class of the comp package
 ReplacedElement.cppImplementation of ReplacedElement_t, the SBaseRef_t derived class of replacedElements package
 ReplacedElement.hDefinition of ReplacedElement_t, the SBase_t derived class of replacedElements package
 Replacing.cppImplementation of Replacing_t, the SBaseRef_t derived class of Replacings package
 Replacing.hDefinition of Replacing_t, the SBaseRef_t-derived class of the comp package
 SBaseRef.cppImplementation of SBaseRef_t, the SBase_t-derived class of the comp package
 SBaseRef.hDefinition of SBaseRef_t, the SBase_t derived class of the comp package
 Submodel.cppImplementation of Submodel_t, the SBase_t-derived class of the comp package
 Submodel.hDefinition of Submodel_t, the SBase_t derived class of the comp package
  util
 CompFlatteningConverter.cppImplementation of a first flattening converter
 CompFlatteningConverter.hDefinition of a first flattening converter
 SBMLFileResolver.cppImplementation of SBMLFileResolver_t, the file system based resolver for SBML Documents
 SBMLFileResolver.hA file-based resolver for SBML Documents
 SBMLResolver.cppImplementation of SBMLResolver_t, the base class of package extensions
 SBMLResolver.hDefinition of SBMLResolver_t, the base class for resolving SBML documents
 SBMLResolverRegistry.cppImplementation of SBMLResolverRegistry_t, a registry of available resolvers
 SBMLResolverRegistry.hDefinition of SBMLResolverRegistry_t, a registry of available resolvers
 SBMLUri.cppImplementation of SBMLUri_t, the utility class for handling uris
 SBMLUri.hDefinition of SBMLUri_t, the utility class for handling URIs
  validator
 CompConsistencyValidator.cpp
 CompConsistencyValidator.h
 CompIdentifierConsistencyValidator.cpp
 CompIdentifierConsistencyValidator.h
 CompSBMLError.hRepresents SBML errors and other diagnostics
 CompSBMLErrorTable.hRepresents SBML errors and other diagnostics
 CompUnitConsistencyValidator.cpp
 CompUnitConsistencyValidator.h
 CompValidator.cpp
 CompValidator.hBase class for SBML CompValidators
  fbc
  common
 FbcExtensionTypes.hIncludes all SBML types of the fbc package extension in a single header file
 fbcfwd.hImplementation of the fbcfwd class
  extension
 FbcExtension.cppImplementation of FbcExtension_t, the core module of fbc package
 FbcExtension.hDefinition of FbcExtension_t, the core module of fbc package
 FbcModelPlugin.cppImplementation of FbcModelPlugin_t, the plugin class of the fbc package for the Model_t element
 FbcModelPlugin.hDefinition of FbcModelPlugin_t, the plugin class of fbc package for the Model_t element
 FbcReactionPlugin.cppImplementation of the FbcReactionPlugin_t class
 FbcReactionPlugin.hImplementation of the FbcReactionPlugin_t class
 FbcSBasePlugin.cppImplementation of the FbcSBasePlugin_t class
 FbcSBasePlugin.hDefinition of the FbcSBasePlugin_t class
 FbcSBMLDocumentPlugin.cppImplementation of the FbcSBMLDocumentPlugin_t class
 FbcSBMLDocumentPlugin.hImplementation of the FbcSBMLDocumentPlugin_t class
 FbcSpeciesPlugin.cppImplementation of FbcSpeciesPlugin_t, the plugin class of the fbc package for the Species_t element
 FbcSpeciesPlugin.hDefinition of FbcSpeciesPlugin_t, the plugin class of the fbc package for the Species_t element
  sbml
 Association.cppImplementation of Association_t, the contents of a GeneAssociation_t
 Association.hDefinition of Association_t, the contents of a GeneAssociation_t
 FbcAnd.cppImplementation of the FbcAnd_t class
 FbcAnd.hImplementation of the FbcAnd_t class
 FbcAssociation.cppImplementation of the FbcAssociation_t class
 FbcAssociation.hImplementation of the FbcAssociation_t class
 FbcOr.cppImplementation of the FbcOr_t class
 FbcOr.hImplementation of the FbcOr_t class
 FluxBound.cppImplementation of FluxBound_t, the SBase_t derived class of the fbc package
 FluxBound.hDefinition of FluxBound_t, the SBase_t derived class of the fbc package
 FluxObjective.cppImplementation of the FluxObjective_t class
 FluxObjective.hDefinition of FluxObjective_t, the SBase_t derived class of the fbc package
 GeneAssociation.cppImplementation of GeneAssociation_t, the SBase_t derived class of the fbc package
 GeneAssociation.hDefinition of GeneAssociation_t, the SBase_t derived class of the fbc package
 GeneProduct.cppImplementation of the GeneProduct_t class
 GeneProduct.hImplementation of the GeneProduct_t class
 GeneProductAssociation.cppImplementation of the GeneProductAssociation_t class
 GeneProductAssociation.hImplementation of the GeneProductAssociation_t class
 GeneProductRef.cppImplementation of the GeneProductRef_t class
 GeneProductRef.hImplementation of the GeneProductRef_t class
 KeyValuePair.cppImplementation of the KeyValuePair_t class
 KeyValuePair.hDefinition of the KeyValuePair_t class
 ListOfKeyValuePairs.cppImplementation of the ListOfKeyValuePairs_t class
 ListOfKeyValuePairs.hDefinition of the ListOfKeyValuePairs_t class
 ListOfUserDefinedConstraintComponents.cppImplementation of the ListOfUserDefinedConstraintComponents_t class
 ListOfUserDefinedConstraintComponents.hDefinition of the ListOfUserDefinedConstraintComponents_t class
 ListOfUserDefinedConstraints.cppImplementation of the ListOfUserDefinedConstraints_t class
 ListOfUserDefinedConstraints.hDefinition of the ListOfUserDefinedConstraints_t class
 Objective.cppImplementation of the Objective_t class
 Objective.hDefinition of Objective_t, the SBase_t derived class of the fbc package
 UserDefinedConstraint.cppImplementation of the UserDefinedConstraint_t class
 UserDefinedConstraint.hDefinition of the UserDefinedConstraint_t class
 UserDefinedConstraintComponent.cppImplementation of the UserDefinedConstraintComponent_t class
 UserDefinedConstraintComponent.hDefinition of the UserDefinedConstraintComponent_t class
  util
 CobraToFbcConverter.cppImplementation of a cobra 2 fbc converter
 CobraToFbcConverter.hDefinition of a cobra 2 fbc converter
 FbcToCobraConverter.cppImplementation of a fbc 2 cobra converter
 FbcToCobraConverter.hDefinition of a fbc 2 cobra converter
 FbcV1ToV2Converter.cppImplementation of a fbc v1 to fbc v2 converter
 FbcV1ToV2Converter.hDefinition of a fbc v1 to fbc v2 converter
 FbcV2ToV1Converter.cppImplementation of a fbc v2 to fbc v1 converter
 FbcV2ToV1Converter.hDefinition of a fbc v2 to fbc v1 converter
  validator
 FbcConsistencyValidator.cpp
 FbcConsistencyValidator.h
 FbcIdentifierConsistencyValidator.cpp
 FbcIdentifierConsistencyValidator.h
 FbcSBMLError.hRepresents SBML errors and other diagnostics
 FbcSBMLErrorTable.hRepresents SBML errors and other diagnostics
 FbcValidator.cppBase class for SBML Validators
 FbcValidator.hBase class for SBML CompValidators
  groups
  common
 GroupsExtensionTypes.hDefinition of GroupsExtensionTypes
 groupsfwd.hDefinition of groupsfwd
  extension
 GroupsExtension.cppImplementation of GroupsExtension_t
 GroupsExtension.hDefinition of GroupsExtension_t
 GroupsModelPlugin.cppImplementation of the GroupsModelPlugin_t class
 GroupsModelPlugin.hDefinition of the GroupsModelPlugin_t class
 GroupsSBMLDocumentPlugin.cppImplementation of the GroupsSBMLDocumentPlugin_t class
 GroupsSBMLDocumentPlugin.hDefinition of the GroupsSBMLDocumentPlugin_t class
  sbml
 Group.cppImplementation of the Group_t class
 Group.hDefinition of the Group_t class
 ListOfGroups.cppImplementation of the ListOfGroups_t class
 ListOfGroups.hDefinition of the ListOfGroups_t class
 ListOfMembers.cppImplementation of the ListOfMembers_t class
 ListOfMembers.hDefinition of the ListOfMembers_t class
 Member.cppImplementation of the Member_t class
 Member.hDefinition of the Member_t class
  validator
 GroupsConsistencyValidator.cpp
 GroupsConsistencyValidator.h
 GroupsIdentifierConsistencyValidator.cpp
 GroupsIdentifierConsistencyValidator.h
 GroupsSBMLError.hDefinition of the GroupsSBMLError class
 GroupsSBMLErrorTable.hDefinition of the GroupsSBMLErrorTable class
 GroupsValidator.cppDefinition of GroupsValidator_t
 GroupsValidator.hDefinition of GroupsValidator_t
  layout
  common
 LayoutExtensionTypes.hInclude all SBML types of layout extension in a single header file
 layoutfwd.hC Structure declarations for SBML Layout_t
  extension
 LayoutExtension.cppImplementation of LayoutExtension_t, the core module of layout package
 LayoutExtension.hDefinition of LayoutExtension_t, the core module of layout package
 LayoutModelPlugin.cppImplementation of LayoutModelPlugin_t, the plugin class of layout package for the Model_t element
 LayoutModelPlugin.hDefinition of LayoutModelPlugin_t, the plugin class of layout package for Model_t element
 LayoutSBMLDocumentPlugin.cppImplementation of the LayoutSBMLDocumentPlugin_t class
 LayoutSBMLDocumentPlugin.hImplementation of the LayoutSBMLDocumentPlugin_t class
 LayoutSpeciesReferencePlugin.cppImplementation of LayoutSpeciesReferencePlugin_t, the plugin object of layout package (Level2) for the SpeciesReference_t and ModifierSpeciesReference_t elements
 LayoutSpeciesReferencePlugin.hDefinition of LayoutSpeciesReferencePlugin_t, the plugin class of layout package (Level2) for the SpeciesReference_t and ModifierSpeciesReference_t elements
  sbml
 BoundingBox.cppImplementation of BoundingBox_t for SBML Layout_t
 BoundingBox.hDefinition of BoundingBox_t for SBML Layout_t
 CompartmentGlyph.cppImplementation of CompartmentGlyph_t for SBML Layout_t
 CompartmentGlyph.hDefinition of CompartmentGlyph_t for SBML Layout_t
 CubicBezier.cppImplementation of CubicBezier_t for SBML Layout_t
 CubicBezier.hDefinition of CubicBezier_t for SBML Layout_t
 Curve.cppImplementation of Curve_t for SBML Layout_t
 Curve.hDefinition of Curve_t for SBML Layout_t
 Dimensions.cppImplementation of Dimensions_t for SBML Layout_t
 Dimensions.hDefinition of Dimensions_t for SBML Layout_t
 GeneralGlyph.cppImplementation of GeneralGlyph_t for SBML Layout_t
 GeneralGlyph.hDefinition of GeneralGlyph_t for SBML Layout_t
 GraphicalObject.cppImplementation of GraphicalObject_t for SBML Layout_t
 GraphicalObject.hDefinition of GraphicalObject_t for SBML Layout_t
 Layout.cppImplementation of Layout_t for SBML Layout_t
 Layout.hDefinition of Layout_t for SBML Layout_t
 LineSegment.cppImplementation of LineSegment_t for SBML Layout_t
 LineSegment.hDefinition of LineSegment_t for SBML Layout_t
 Point.cppImplementation of Point_t for SBML Layout_t
 Point.hDefinition of Point_t for SBML Layout_t
 ReactionGlyph.cppImplementation of ReactionGlyph_t for SBML Layout_t
 ReactionGlyph.hDefinition of ReactionGlyph_t for SBML Layout_t
 ReferenceGlyph.cppImplementation of ReferenceGlyph_t for SBML Layout_t
 ReferenceGlyph.hDefinition of ReferenceGlyph_t for SBML Layout_t
 SpeciesGlyph.cppImplementation of SpeciesGlyph_t for SBML Layout_t
 SpeciesGlyph.hDefinition of SpeciesGlyph_t for SBML Layout_t
 SpeciesReferenceGlyph.cppImplementation of SpeciesReferenceGlyph_t for SBML Layout_t
 SpeciesReferenceGlyph.hDefinition of SpeciesReferenceGlyph_t for SBML Layout_t
 SpeciesReferenceRole.hDefinition of SpeciesReferenceRole enum for SBML Layout_t
 TextGlyph.cppImplementation of TextGlyph_t for SBML Layout_t
 TextGlyph.hDefinition of TextGlyph_t for SBML Layout_t
  util
 LayoutAnnotation.cppLayout_t annotation I/O
 LayoutAnnotation.hLayout_t annotation I/O
 LayoutUtilities.cppImplementation of some methods used by many of the layout files
 LayoutUtilities.hDefinition of LayoutUtilities for SBML Layout_t
  validator
 LayoutConsistencyValidator.cpp
 LayoutConsistencyValidator.h
 LayoutIdentifierConsistencyValidator.cpp
 LayoutIdentifierConsistencyValidator.h
 LayoutSBMLError.hImplementation of the LayoutSBMLError class
 LayoutSBMLErrorTable.h
 LayoutValidator.cppImplementation of the LayoutValidator_t class
 LayoutValidator.hImplementation of the LayoutValidator_t class
  multi
  common
 MultiExtensionTypes.h: Implementation of the MultiExtensionTypes class
 multifwd.h: Implementation of the multifwd class
  extension
 MultiASTPlugin.cppImplementation of MultiASTPlugin_t, the plugin class of multi package for the AST element
 MultiASTPlugin.hDefinition of MultiASTPlugin_t, the plugin class of multi package for the AST element
 MultiCompartmentPlugin.cpp: Implementation of the MultiCompartmentPlugin_t class
 MultiCompartmentPlugin.h: Implementation of the MultiCompartmentPlugin_t class
 MultiExtension.cpp: Implementation of the MultiExtension_t class
 MultiExtension.h: Implementation of the MultiExtension_t class
 MultiListOfReactionsPlugin.cpp: Implementation of the MultiListOfReactionsPlugin_t class
 MultiListOfReactionsPlugin.h: Implementation of the MultiListOfReactionsPlugin_t class
 MultiModelPlugin.cpp: Implementation of the MultiModelPlugin_t class
 MultiModelPlugin.h: Implementation of the MultiModelPlugin_t class
 MultiSBMLDocumentPlugin.cpp: Implementation of the MultiSBMLDocumentPlugin_t class
 MultiSBMLDocumentPlugin.h: Implementation of the MultiSBMLDocumentPlugin_t class
 MultiSimpleSpeciesReferencePlugin.cpp: Implementation of the MultiSimpleSpeciesReferencePlugin_t class
 MultiSimpleSpeciesReferencePlugin.h: Implementation of the MultiSimpleSpeciesReferencePlugin_t class
 MultiSpeciesPlugin.cpp: Implementation of the MultiSpeciesPlugin_t class
 MultiSpeciesPlugin.h: Implementation of the MultiSpeciesPlugin_t class
 MultiSpeciesReferencePlugin.cpp: Implementation of the MultiSpeciesReferencePlugin_t class
 MultiSpeciesReferencePlugin.h: Implementation of the MultiSpeciesReferencePlugin_t class
  sbml
 BindingSiteSpeciesType.cpp: Implementation of the BindingSiteSpeciesType_t class
 BindingSiteSpeciesType.h: Implementation of the BindingSiteSpeciesType_t class
 CompartmentReference.cpp: Implementation of the CompartmentReference_t class
 CompartmentReference.h: Implementation of the CompartmentReference_t class
 InSpeciesTypeBond.cpp: Implementation of the InSpeciesTypeBond_t class
 InSpeciesTypeBond.h: Implementation of the InSpeciesTypeBond_t class
 IntraSpeciesReaction.cpp: Implementation of the IntraSpeciesReaction_t class
 IntraSpeciesReaction.h: Implementation of the IntraSpeciesReaction_t class
 MultiSpeciesType.cpp: Implementation of the MultiSpeciesType_t class
 MultiSpeciesType.h: Implementation of the MultiSpeciesType_t class
 OutwardBindingSite.cpp: Implementation of the OutwardBindingSite_t class
 OutwardBindingSite.h: Implementation of the OutwardBindingSite_t class
 PossibleSpeciesFeatureValue.cpp: Implementation of the PossibleSpeciesFeatureValue_t class
 PossibleSpeciesFeatureValue.h: Implementation of the PossibleSpeciesFeatureValue_t class
 SpeciesFeature.cpp: Implementation of the SpeciesFeature_t class
 SpeciesFeature.h: Implementation of the SpeciesFeature_t class
 SpeciesFeatureType.cpp: Implementation of the SpeciesFeatureType_t class
 SpeciesFeatureType.h: Implementation of the SpeciesFeatureType_t class
 SpeciesFeatureValue.cpp: Implementation of the SpeciesFeatureValue_t class
 SpeciesFeatureValue.h: Implementation of the SpeciesFeatureValue_t class
 SpeciesTypeComponentIndex.cpp: Implementation of the SpeciesTypeComponentIndex_t class
 SpeciesTypeComponentIndex.h: Implementation of the SpeciesTypeComponentIndex_t class
 SpeciesTypeComponentMapInProduct.cpp: Implementation of the SpeciesTypeComponentMapInProduct_t class
 SpeciesTypeComponentMapInProduct.h: Implementation of the SpeciesTypeComponentMapInProduct_t class
 SpeciesTypeInstance.cpp: Implementation of the SpeciesTypeInstance_t class
 SpeciesTypeInstance.h: Implementation of the SpeciesTypeInstance_t class
 SubListOfSpeciesFeatures.cpp: Implementation of the SubListOfSpeciesFeatures_t class
 SubListOfSpeciesFeatures.h: Implementation of the SubListOfSpeciesFeatures_t class
  validator
 MultiConsistencyValidator.cpp
 MultiConsistencyValidator.h
 MultiIdentifierConsistencyValidator.cpp
 MultiIdentifierConsistencyValidator.h
 MultiMathMLConsistencyValidator.cpp
 MultiMathMLConsistencyValidator.h
 MultiSBMLError.h: Implementation of the MultiSBMLError class
 MultiSBMLErrorTable.h: Implementation of the MultiSBMLErrorTable class
 MultiValidator.cpp: Implementation of the MultiValidator_t class
 MultiValidator.h: Implementation of the MultiValidator_t class
  qual
  common
 QualExtensionTypes.hInclude all SBML types of qual extension in a single header file
 qualfwd.hSBML Qual C structure declarations
  extension
 QualExtension.cppImplementation of QualExtension_t, the core module of qual package
 QualExtension.hDefinition of QualExtension_t, the core module of qual package
 QualModelPlugin.cppImplementation of QualModelPlugin_t, the plugin class of qual package for the Model_t element
 QualModelPlugin.hDefinition of QualModelPlugin_t, the plugin class of qual package for the Model_t element
 QualSBMLDocumentPlugin.cppImplementation of QualSBMLDocumentPlugin_t, the plugin class of qual package for the SBase_t element
 QualSBMLDocumentPlugin.hImplementation of the QualSBMLDocumentPlugin_t class
  sbml
 DefaultTerm.cppImplementation of the DefaultTerm_t class
 DefaultTerm.hImplementation of the DefaultTerm_t class
 FunctionTerm.cppImplementation of the FunctionTerm_t class
 FunctionTerm.hImplementation of the FunctionTerm_t class
 Input.cppImplementation of the Input_t class
 Input.hImplementation of the Input_t class
 Output.cppImplementation of the Output_t class
 Output.hImplementation of the Output_t class
 QualitativeSpecies.cppImplementation of the QualitativeSpecies_t class
 QualitativeSpecies.hImplementation of the QualitativeSpecies_t class
 Transition.cppImplementation of the Transition_t class
 Transition.hImplementation of the Transition_t class
  validator
 QualConsistencyValidator.cpp
 QualConsistencyValidator.h
 QualIdentifierConsistencyValidator.cpp
 QualIdentifierConsistencyValidator.h
 QualMathConsistencyValidator.cpp
 QualMathConsistencyValidator.h
 QualSBMLError.hRepresents SBML errors and other diagnostics
 QualSBMLErrorTable.hRepresents SBML errors and other diagnostics
 QualValidator.cppBase class for SBML Validators
 QualValidator.hImplementation of the QualValidator_t class
  util
 CallbackRegistry.cpp
 CallbackRegistry.h
 ElementFilter.cpp
 ElementFilter.hBase class of element filters
 IdentifierTransformer.cpp
 IdentifierTransformer.h
 IdFilter.cpp
 IdFilter.h
 IdList.cpp
 IdList.h
 List.cppSimple, generic list class
 List.hSimple, generic list utility class
 MathFilter.cpp
 MathFilter.h
 memory.c
 memory.h
 MetaIdFilter.cpp
 MetaIdFilter.h
 PrefixTransformer.cpp
 PrefixTransformer.h
 Stack.c
 Stack.h
 StringBuffer.c
 StringBuffer.h
 util.cppUtility functions
 util.hUtility functions
  validator
 ConsistencyValidator.cpp
 ConsistencyValidator.h
 ConstraintMacros.hDefines the validator constraint "language"
 IdentifierConsistencyValidator.cpp
 IdentifierConsistencyValidator.h
 InternalConsistencyValidator.cpp
 InternalConsistencyValidator.h
 L1CompatibilityValidator.cpp
 L1CompatibilityValidator.h
 L2v1CompatibilityValidator.cpp
 L2v1CompatibilityValidator.h
 L2v2CompatibilityValidator.cpp
 L2v2CompatibilityValidator.h
 L2v3CompatibilityValidator.cpp
 L2v3CompatibilityValidator.h
 L2v4CompatibilityValidator.cpp
 L2v4CompatibilityValidator.h
 L3v1CompatibilityValidator.cpp
 L3v1CompatibilityValidator.h
 L3v2CompatibilityValidator.cpp
 L3v2CompatibilityValidator.h
 MathMLConsistencyValidator.cpp
 MathMLConsistencyValidator.h
 ModelingPracticeValidator.cpp
 ModelingPracticeValidator.h
 OverdeterminedValidator.cpp
 OverdeterminedValidator.h
 SBMLExternalValidator.cpp
 SBMLExternalValidator.h
 SBMLInternalValidator.cppImplementation of SBMLInternalValidator_t, the validator for all internal validation performed by libSBML
 SBMLInternalValidator.hDefinition of SBMLInternalValidator_t, the validator for all internal validation performed by libSBML
 SBMLValidator.cppImplementation of SBMLValidator_t, the base class for user callable SBML validators
 SBMLValidator.hDefinition of SBMLValidator_t, the base class for user callable SBML validators
 SBOConsistencyValidator.cpp
 SBOConsistencyValidator.h
 StrictUnitConsistencyValidator.cpp
 StrictUnitConsistencyValidator.h
 UnitConsistencyValidator.cpp
 UnitConsistencyValidator.h
 Validator.cppBase class for SBML Validators
 Validator.hBase class for SBML Validators
 VConstraint.cppBase class for all SBML Validator_t Constraints
 VConstraint.hBase class for all SBML Validator_t Constraints
  xml
 ExpatAttributes.cpp
 ExpatAttributes.h
 ExpatHandler.cpp
 ExpatHandler.h
 ExpatParser.cpp
 ExpatParser.h
 LibXMLAttributes.cpp
 LibXMLAttributes.h
 LibXMLHandler.cpp
 LibXMLHandler.h
 LibXMLNamespaces.cppExtracts XML namespace declarations from LibXML prefix/URI pairs
 LibXMLNamespaces.hExtracts XML namespace declarations from LibXML prefix/URI pairs
 LibXMLParser.cpp
 LibXMLParser.h
 LibXMLTranscode.cpp
 LibXMLTranscode.h
 XercesAttributes.cpp
 XercesAttributes.h
 XercesHandler.cpp
 XercesHandler.h
 XercesNamespaces.cpp
 XercesNamespaces.h
 XercesParser.cpp
 XercesParser.h
 XercesTranscode.cpp
 XercesTranscode.h
 XMLAttributes.cppXMLAttributes_t are a list of name/value pairs for XMLElements
 XMLAttributes.hXMLAttributes_t are a list of name/value pairs for XML elements
 XMLBuffer.cpp
 XMLBuffer.h
 XMLConstructorException.cppXMLConstructorException_t an exception thrown by XML classes
 XMLConstructorException.hXMLConstructorException_t an exception thrown by XML classes
 XMLError.cppRepresents errors (and messages) encountered during an XML parse
 XMLError.hRepresents errors (and messages) encountered during an XML parse
 XMLErrorLog.cppStores errors (and messages) encountered while processing XML
 XMLErrorLog.hStores errors (and messages) encountered while processing XML
 XMLExtern.hDefines LIBLAX_EXTERN
 XMLFileBuffer.cpp
 XMLFileBuffer.h
 XMLHandler.cpp
 XMLHandler.h
 XMLInputStream.cpp
 XMLInputStream.hXMLInputStream_t
 XMLLogOverride.cppUtility class implementing a temporary override the severity on error logs
 XMLLogOverride.hUtility class implementing a temporary override the severity on error logs
 XMLMemoryBuffer.cpp
 XMLMemoryBuffer.h
 XMLNamespaces.cppA list of XMLNamespace declarations (URI/prefix pairs)
 XMLNamespaces.hA list of XMLNamespace declarations (URI/prefix pairs)
 XMLNode.cppA node in an XML document tree
 XMLNode.hClass definition of XMLNode_t, a node in an XML document tree
 XMLOutputStream.cpp
 XMLOutputStream.hXMLOutputStream_t
 XMLParser.cpp
 XMLParser.h
 XMLToken.cppA unit of XML syntax, either an XML element or text
 XMLToken.hA unit of XML syntax, either an XML element or text
 XMLTokenizer.cpp
 XMLTokenizer.h
 XMLTriple.cppStores an XML namespace triple
 XMLTriple.hStores an XML namespace triple
 AlgebraicRule.cppImplementations of AlgebraicRule_t
 AlgebraicRule.hDefinitions of AlgebraicRule_t
 AssignmentRule.cppImplementations of AssignmentRule_t
 AssignmentRule.hDefinitions of AssignmentRule_t
 Compartment.cppImplementations of Compartment_t and ListOfCompartments_t
 Compartment.hDefinitions of Compartment_t and ListOfCompartments_t
 CompartmentType.cppImplementation of CompartmentType_t and ListOfCompartmentTypes_t
 CompartmentType.hDefinitions of CompartmentType_t and ListOfCompartmentTypes_t
 Constraint.cppImplementations of Constraint_t and ListOfConstraints_t
 Constraint.hDefinitions of Constraint_t and ListOfConstraints_t
 Delay.cppImplementation of Delay_t
 Delay.hDefinition of Delay_t
 Event.cppImplementations of Event_t and ListOfEvents_t
 Event.hDefinitions of Event_t and ListOfEvents_t
 EventAssignment.cppImplementation of EventAssignment_t
 EventAssignment.hDefinition of EventAssignment_t and ListOfEventAssignments_t
 ExpectedAttributes.cppImplementation of ExpectedAttributes, the class allowing the specification of attributes to expect
 ExpectedAttributes.hDefinition of ExpectedAttributes, the class allowing the specification of attributes to expect
 FunctionDefinition.cppImplementation of FunctionDefinition_t and ListOfFunctionDefinitions_t
 FunctionDefinition.hDefinitions of FunctionDefinition_t and ListOfFunctionDefinitions_t
 InitialAssignment.cppImplementation of InitialAssignment_t and ListOfInitialAssignments_t
 InitialAssignment.hDefinitions of InitialAssignment_t and ListOfInitialAssignments_t
 KineticLaw.cppImplementation of KineticLaw_t
 KineticLaw.hDefinition of KineticLaw_t
 ListOf.cppWraps List_t and inherits from SBase_t
 ListOf.h
 LocalParameter.cppImplementations of LocalLocalParameter and ListOfLocalLocalParameters
 LocalParameter.hDefinitions of LocalParameter_t and ListOfLocalParameters_t
 Model.cppImplementation of Model_t
 Model.hDefinition of Model_t
 ModifierSpeciesReference.cppImplementation of ModifierSpeciesReference_t
 ModifierSpeciesReference.hDefinitions of ModifierSpeciesReference_t
 Parameter.cppImplementations of Parameter_t and ListOfParameters_t
 Parameter.hDefinitions of Parameter_t and ListOfParameters_t
 Priority.cppImplementation of Priority_t
 Priority.hDefinition of Priority_t
 RateRule.cppImplementations of RateRule_t
 RateRule.hDefinitions of RateRule_t
 Reaction.cppImplementations of Reaction_t and ListOfReactions_t
 Reaction.hDefinitions of Reaction_t and ListOfReactions_t
 Rule.cppImplementations of Rule_t and ListOfRules_t
 Rule.hDefinitions of Rule_t and ListOfRules_t
 SBase.cppImplementation of SBase_t, the base object of all SBML objects
 SBase.hDefinition of SBase_t, the base object of all SBML objects
 SBMLConstructorException.cppImplementation of SBMLConstructorException_t, the exception class for constructor exceptions
 SBMLConstructorException.hDefinition of SBMLConstructorException_t, the exception class for constructor exceptions
 SBMLConvert.cppPerforms conversion between SBML levels
 SBMLDocument.cppImplementation of the top-level container for an SBML Model_t and associated data
 SBMLDocument.hTop-level container for an SBML Model_t and associated data
 SBMLError.cppRepresents SBML errors and other diagnostics
 SBMLError.hRepresents SBML errors and other diagnostics
 SBMLErrorLog.cppStores errors (and messages) encountered while processing SBML
 SBMLErrorLog.hStores errors (and messages) encountered while processing SBML
 SBMLErrorTable.hRepresents SBML errors and other diagnostics
 SBMLNamespaces.cppSBMLNamespaces_t class to store level/version and namespace
 SBMLNamespaces.hSBMLNamespaces_t class to store level/version and namespace
 SBMLReader.cppReads an SBML Document into memory
 SBMLReader.hReads an SBML Document into memory
 SBMLTransforms.cppTransform functions
 SBMLTransforms.h
 SBMLTypeCodes.cppEnumeration to identify SBML objects at runtime
 SBMLTypeCodes.hEnumeration to identify SBML objects at runtime
 SBMLTypes.hInclude all SBML types in a single header file
 SBMLVisitor.cppVisitor Design Pattern for the SBML object tree
 SBMLVisitor.hVisitor Design Pattern for the SBML object tree
 SBMLWriter.cppWrites an SBML Document to file or in-memory string
 SBMLWriter.hWrites an SBML Document to file or in-memory string
 SBO.cppSBO_t utility functions
 SBO.hSBO_t utility Function
 SimpleSpeciesReference.cppImplementation of SimpleSpeciesReference_t
 SimpleSpeciesReference.hDefinitions of SimpleSpeciesReference_t
 Species.cppImplementations of Species_t and ListOfSpecies_t
 Species.hDefinitions of Species_t and ListOfSpecies_t
 SpeciesReference.cppImplementation of SpeciesReference_t and ListOfSpeciesReferences_t
 SpeciesReference.hDefinitions of SpeciesReference_t and ListOfSpeciesReferences_t
 SpeciesType.cppImplementation of SpeciesType_t and ListOfSpeciesTypes_t
 SpeciesType.hDefinitions of SpeciesType_t and ListOfSpeciesType
 StoichiometryMath.cppImplementation of StoichiometryMath_t
 StoichiometryMath.hDefinition of StoichiometryMath_t
 SyntaxChecker.cppSyntax checking functions
 SyntaxChecker.hSyntax checking functions
 Trigger.cppImplementation of Trigger_t
 Trigger.hDefinition of Trigger_t
 Unit.cppImplementations of Unit_t and ListOfUnits_t
 Unit.hDefinitions of Unit_t and ListOfUnits_t
 UnitDefinition.cppImplementations of SBML's UnitDefinition_t and ListOfUnitDefinitions_t
 UnitDefinition.hDefinitions of UnitDefinition_t and ListOfUnitDefinitions_t
 UnitKind.cSBML UnitKind enumeration
 UnitKind.hDefinition of SBML's UnitKind enumeration