libpappsomspp
Library for mass spectrometry
xicpeptidefragmentionnaturalisotope.cpp
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1/*
2 * *******************************************************************************
3 * * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4 * *
5 * * This file is part of MassChroqPRM.
6 * *
7 * * MassChroqPRM is free software: you can redistribute it and/or modify
8 * * it under the terms of the GNU General Public License as published by
9 * * the Free Software Foundation, either version 3 of the License, or
10 * * (at your option) any later version.
11 * *
12 * * MassChroqPRM is distributed in the hope that it will be useful,
13 * * but WITHOUT ANY WARRANTY; without even the implied warranty of
14 * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15 * * GNU General Public License for more details.
16 * *
17 * * You should have received a copy of the GNU General Public License
18 * * along with MassChroqPRM. If not, see <http://www.gnu.org/licenses/>.
19 * *
20 * * Contributors:
21 * * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
22 * implementation
23 * ******************************************************************************/
24
26
27namespace pappso
28{
30 const MsRunId &msrun_id,
31 const PeptideNaturalIsotopeAverageSp &naturalIsotopeAverageSp,
32 const PeptideFragmentIonSp &peptideFragmentIonSp)
33 : QualifiedXic(msrun_id,
34 naturalIsotopeAverageSp.get()->getMz(),
35 naturalIsotopeAverageSp.get()->getPrecision()),
36 msp_naturalIsotopeAverage(naturalIsotopeAverageSp),
37 msp_peptideFragmentIon(peptideFragmentIonSp)
38{
39 qDebug() << "XicPeptideFragmentIonNaturalIsotope::"
40 "XicPeptideFragmentIonNaturalIsotope begin";
41
42 qDebug() << "XicPeptideFragmentIonNaturalIsotope::"
43 "XicPeptideFragmentIonNaturalIsotope 1 "
45
46 qDebug() << "XicPeptideFragmentIonNaturalIsotope::"
47 "XicPeptideFragmentIonNaturalIsotope 2 "
49}
50
52{
53}
54
57 : QualifiedXic(other)
58{
59 qDebug() << "XicPeptideFragmentIonNaturalIsotope::"
60 "XicPeptideFragmentIonNaturalIsotope copy begin";
63 qDebug() << "XicPeptideFragmentIonNaturalIsotope::"
64 "XicPeptideFragmentIonNaturalIsotope copy end";
65}
66} // namespace pappso
MS run identity MsRunId identifies an MS run with a unique ID (XmlId) and contains eventually informa...
Definition: msrunid.h:53
XicPeptideFragmentIonNaturalIsotope(const MsRunId &msrun_id, const PeptideNaturalIsotopeAverageSp &naturalIsotopeAverageSp, const PeptideFragmentIonSp &peptideFragmentIonSp)
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
std::shared_ptr< const PeptideFragmentIon > PeptideFragmentIonSp
std::shared_ptr< const PeptideNaturalIsotopeAverage > PeptideNaturalIsotopeAverageSp