Package htsjdk.tribble
Interface Feature
-
- All Superinterfaces:
Locatable
- All Known Subinterfaces:
BEDFeature
,Gff3Feature
- All Known Implementing Classes:
FullBEDFeature
,Gff3FeatureImpl
,Interval
,MutableFeature
,SimpleBEDFeature
,SimpleFeature
,VariantContext
public interface Feature extends Locatable
Marker interface for Locatables with Tribble support. A Feature represents a record in a tribble-supported file format. AsLocatable
, represents a locus on a reference sequence and is expected to return 1-based closed-ended intervals.
-
-
Method Summary
All Methods Instance Methods Default Methods Deprecated Methods Modifier and Type Method Description default String
getChr()
Deprecated.on 03/2015.-
Methods inherited from interface htsjdk.samtools.util.Locatable
contains, contigsMatch, getContig, getEnd, getLengthOnReference, getStart, overlaps, withinDistanceOf
-
-
-
-
Method Detail
-
getChr
@Deprecated default String getChr()
Deprecated.on 03/2015. Use getContig() instead.Return the features reference sequence name, e.g chromosome or contig
-
-