Package htsjdk.samtools.fastq
-
Interface Summary Interface Description FastqWriter Simple interface for a class that can write out fastq records. -
Class Summary Class Description AsyncFastqWriter Implementation of a FastqWriter that provides asynchronous output.BasicFastqWriter In general FastqWriterFactory should be used so that AsyncFastqWriter can be enabled, but there are some cases in which that behavior is explicitly not wanted.FastqConstants FastqEncoder Codec for encoding records into FASTQ format.FastqReader Reads a FASTQ file with four lines per record.FastqRecord Simple representation of a FASTQ record, without any conversionFastqWriterFactory Factory class for creating FastqWriter objects. -
Enum Summary Enum Description FastqConstants.FastqExtensions FastqReader.LineType Enum of the types of lines we see in Fastq.