Class SimpleOrthologue

    • Constructor Summary

      Constructors 
      Constructor Description
      SimpleOrthologue​(int taxonID, java.lang.String locusID, java.lang.String homologeneID, java.lang.String accession)
      this constructor does the Taxon lookup for you too
      SimpleOrthologue​(Taxon taxon, java.lang.String locusID, java.lang.String homologeneID, java.lang.String accession)  
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      boolean equals​(java.lang.Object o)  
      java.lang.String getAccession()
      get the Accession ID associated with this orthologue.
      java.lang.String getHomologeneID()
      get the Homologene ID.
      java.lang.String getLocusID()
      get the locus ID associated with this orthologue.
      Taxon getTaxon()
      return the Taxon associated with this orthologue
      int getTaxonID()
      a convenience method to return the TaxonID for thsi orhtologue.
      java.lang.String getTitle()
      return the title used by Genbank for this protein
      void setTitle​(java.lang.String title)  
      • Methods inherited from class java.lang.Object

        clone, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • SimpleOrthologue

        public SimpleOrthologue​(Taxon taxon,
                                java.lang.String locusID,
                                java.lang.String homologeneID,
                                java.lang.String accession)
      • SimpleOrthologue

        public SimpleOrthologue​(int taxonID,
                                java.lang.String locusID,
                                java.lang.String homologeneID,
                                java.lang.String accession)
                         throws java.lang.IllegalArgumentException
        this constructor does the Taxon lookup for you too
        Throws:
        java.lang.IllegalArgumentException