Gnumed.business.gmExportArea API documentation
Description: GNUmed export area …

# Module `Gnumed.business.gmExportArea`

GNUmed export area

Think shopping cart in a web shop.

This is where you want to put documents for further processing by you or someone else, like your secretary.

Expand source code

    """GNUmed export area

    Think shopping cart in a web shop.

    This is where you want to put documents for further
    processing by you or someone else, like your secretary.
    """
    #============================================================
    __license__ = "GPL v2 or later"
    __author__ = "K.Hilbert <Karsten.Hilbert@gmx.net>"

    import sys
    import logging
    import shutil
    import os
    import platform
    import hashlib

    if __name__ == '__main__':
            sys.path.insert(0, '../../')
            _ = lambda x:x
    from Gnumed.pycommon import gmTools
    from Gnumed.pycommon import gmBusinessDBObject
    from Gnumed.pycommon import gmPG2
    from Gnumed.pycommon import gmMimeLib
    from Gnumed.pycommon import gmDateTime
    from Gnumed.pycommon import gmCfgINI
    from Gnumed.pycommon import gmCrypto

    from Gnumed.business import gmDocuments
    from Gnumed.business import gmKeywordExpansion
    from Gnumed.business import gmStaff

    _log = logging.getLogger('gm.exp_area')
    _cfg = gmCfgINI.gmCfgData()

    PRINT_JOB_DESIGNATION = 'print'
    DOCUMENTS_SUBDIR = 'documents'
    DIRENTRY_README_NAME = '.README.GNUmed-DIRENTRY'

    #============================================================
    # export area item handling
    #------------------------------------------------------------
    _SQL_get_export_items = "SELECT * FROM clin.v_export_items WHERE %s"

    class cExportItem(gmBusinessDBObject.cBusinessDBObject):
            """Represents an item in the export area table"""

            _cmd_fetch_payload = _SQL_get_export_items % "pk_export_item = %s"
            _cmds_store_payload = [
                    """UPDATE clin.export_item SET
                                    fk_identity = %(pk_identity)s,
                                    created_by = gm.nullify_empty_string(%(created_by)s),
                                    created_when = %(created_when)s,
                                    designation = gm.nullify_empty_string(%(designation)s),
                                    description = gm.nullify_empty_string(%(description)s),
                                    fk_doc_obj = %(pk_doc_obj)s,
                                    data = CASE
                                            WHEN %(pk_doc_obj)s IS NULL THEN coalesce(data, 'to be replaced by real data')
                                            ELSE NULL
                                    END,
                                    filename = CASE
                                            WHEN %(pk_doc_obj)s IS NULL THEN gm.nullify_empty_string(%(filename)s)
                                            ELSE NULL
                                    END
                            WHERE
                                    pk = %(pk_export_item)s
                                            AND
                                    xmin = %(xmin_export_item)s
                    """,
                    "SELECT clin.export_item_set_list_position(%(pk_export_item)s, %(list_position)s)",
                    _SQL_get_export_items % 'pk_export_item = %(pk_export_item)s'
            ]
            _updatable_fields = [
                    'pk_identity',
                    'created_when',
                    'designation',
                    'description',
                    'pk_doc_obj',
                    'filename',
                    'list_position'
            ]
            #--------------------------------------------------------
            def __init__(self, aPK_obj=None, row=None, link_obj=None):
                    super(cExportItem, self).__init__(aPK_obj = aPK_obj, row = row, link_obj = link_obj)
                    # force auto-healing if need be
                    if self._payload[self._idx['pk_identity_raw_needs_update']]:
                            _log.warning (
                                    'auto-healing export item [%s] from identity [%s] to [%s] because of document part [%s] seems necessary',
                                    self._payload[self._idx['pk_export_item']],
                                    self._payload[self._idx['pk_identity_raw']],
                                    self._payload[self._idx['pk_identity']],
                                    self._payload[self._idx['pk_doc_obj']]
                            )
                            if self._payload[self._idx['pk_doc_obj']] is None:
                                    _log.error('however, .fk_doc_obj is NULL, which should not happen, leaving things alone for manual inspection')
                                    return
                            # only flag ourselves as modified, do not actually
                            # modify any values, better safe than sorry
                            self._is_modified = True
                            self.save()
                            self.refetch_payload(ignore_changes = False, link_obj = link_obj)

            #--------------------------------------------------------
    #       def format(self):
    #               return u'%s' % self
            #--------------------------------------------------------
            def update_data(self, data=None):
                    assert (data is not None), '<data> must not be <None>'

                    if self.is_DIRENTRY or self.is_document_part:
                            return False

                    SQL = """
                            UPDATE clin.export_item SET
                                    data = %(data)s::bytea,
                                    fk_doc_obj = NULL
                            WHERE pk = %(pk)s"""
                    args = {'pk': self.pk_obj, 'data': data}
                    gmPG2.run_rw_queries(queries = [{'cmd': SQL, 'args': args}], return_data = False, get_col_idx = False)
                    # must update XMIN now ...
                    self.refetch_payload()
                    return True

            #--------------------------------------------------------
            def update_data_from_file(self, filename=None, convert_document_part=False):

                    if self.is_DIRENTRY:
                            return False

                    if self.is_document_part:
                            if not convert_document_part:
                                    return False

                    # sanity check
                    if not (os.access(filename, os.R_OK) and os.path.isfile(filename)):
                            _log.error('[%s] is not a readable file' % filename)
                            return False

                    cmd = """
                            UPDATE clin.export_item SET
                                    data = %(data)s::bytea,
                                    fk_doc_obj = NULL,
                                    filename = gm.nullify_empty_string(%(fname)s)
                            WHERE pk = %(pk)s"""
                    args = {'pk': self.pk_obj, 'fname': filename}
                    if not gmPG2.file2bytea(query = cmd, filename = filename, args = args):
                            return False

                    # must update XMIN now ...
                    self.refetch_payload()
                    return True

            #--------------------------------------------------------
            def save_to_file(self, aChunkSize:int=0, filename:str=None, directory:str=None, passphrase:str=None, convert2pdf:bool=False) -> str:
                    """Save this entry to disk.

                    Args:
                            filename: The filename to save into, unless this is a DIRENTRY.
                            directory: The directory to save the DIRENTRY _content into, if this is a DIRENTRY.
                            passphrase: Encrypt file(s) with this passphrase, if not _None_.
                            convert2pdf: Convert file(s) to PDF on the way out. Before encryption, that is.

                    Returns:
                            Directory for DIRENTRIES, or filename, or None on failure.
                    """
                    if self.is_DIRENTRY and convert2pdf:
                            # cannot convert dir entries to PDF
                            return None

                    # data linked from archive ?
                    part_fname = self.__save_doc_obj (
                            filename = filename,
                            directory = directory,
                            passphrase = passphrase,
                            convert2pdf = convert2pdf
                    )
                    if part_fname is False:
                            return None

                    if part_fname is not None:
                            return part_fname

                    # valid DIRENTRY ?
                    if self.is_valid_DIRENTRY:
                            target_dir = self.__save_direntry (
                                    directory,
                                    passphrase = passphrase
                            )
                            if target_dir is False:
                                    return None

                            if target_dir is not None:
                                    return target_dir

                    # but still a DIRENTRY ?
                    if self.is_DIRENTRY:
                            # yes, but apparently not valid (anymore), say,
                            # other machine or dir not found locally
                            return None

                    # normal item with data in export area table
                    return self.__save_normal_item (
                            filename = filename,
                            directory = directory,
                            passphrase = passphrase,
                            convert2pdf = convert2pdf
                    )

            #--------------------------------------------------------
            def display_via_mime(self, chunksize=0, block=None):

                    # document part
                    if self._payload[self._idx['pk_doc_obj']] is not None:
                            return self.document_part.display_via_mime(chunksize = chunksize, block = block)

                    # DIR entry
                    if self._payload[self._idx['filename']].startswith('DIR::'):
                            # FIXME: error handling with malformed entries
                            tag, node, path = self._payload[self._idx['filename']].split('::', 2)
                            if node != platform.node():
                                    msg = _(
                                            'This item points to a directory on the computer named:\n'
                                            ' %s\n'
                                            'You are, however, currently using another computer:\n'
                                            ' %s\n'
                                            'Directory items can only be viewed/saved/exported\n'
                                            'on the computer they are pointing to.'
                                    ) % (node, platform.node())
                                    return False, msg
                            success, msg = gmMimeLib.call_viewer_on_file(path, block = block)
                            return success, msg

                    # data -> save
                    fname = self.save_to_file(aChunkSize = chunksize)
                    if fname is None:
                            return False, ''

                    success, msg = gmMimeLib.call_viewer_on_file(fname, block = block)
                    if not success:
                            return False, msg

                    return True, ''

            #--------------------------------------------------------
            def get_useful_filename(self, patient=None, directory=None):
                    patient_part = ''
                    if patient is not None:
                            patient_part = '-%s' % patient.subdir_name

                    # preserve original filename extension if available
                    suffix = '.dat'
                    if self._payload[self._idx['filename']] is not None:
                            tmp, suffix = os.path.splitext (
                                    gmTools.fname_sanitize(self._payload[self._idx['filename']]).casefold()
                            )
                            if suffix == '':
                                    suffix = '.dat'
                    fname = gmTools.get_unique_filename (
                            prefix = '%s-gm-export_item%s-' % (self._payload[self._idx['list_position']], patient_part),
                            suffix = suffix,
                            tmp_dir = directory
                    )
                    return fname

            #--------------------------------------------------------
            # helpers
            #--------------------------------------------------------
            def __save_normal_item(self, filename:str=None, directory:str=None, passphrase:str=None, convert2pdf:bool=False) -> str:
                    _SQL = 'SELECT substring(data FROM %(start)s FOR %(size)s) FROM clin.export_item WHERE pk = %(pk)s'
                    tmp_fname = gmTools.get_unique_filename()
                    success = gmPG2.bytea2file (
                            data_query = {'cmd': _SQL, 'args': {'pk': self.pk_obj}},
                            filename = tmp_fname,
                            data_size = self._payload[self._idx['size']]
                    )
                    if not success:
                            return None

                    tmp_fname = gmMimeLib.adjust_extension_by_mimetype(tmp_fname)
                    if convert2pdf:
                            tmp_fname = gmMimeLib.convert_file(filename = tmp_fname, target_mime = 'application/pdf', target_extension = '.pdf')
                    if filename is None:
                            target_fname = self.get_useful_filename(directory = directory)
                    else:
                            target_fname = filename
                    if passphrase is None:
                            if not gmTools.rename_file(tmp_fname, target_fname, overwrite = True, allow_symlink = True):
                                    return None

                            if filename is None:
                                    return gmMimeLib.adjust_extension_by_mimetype(target_fname)

                            return target_fname

                    enc_fname = gmCrypto.encrypt_file (
                            filename = tmp_fname,
                            passphrase = passphrase,
                            verbose = _cfg.get(option = 'debug'),
                            remove_unencrypted = True,
                            convert2pdf = False     # already done, if desired
                    )
                    removed = gmTools.remove_file(tmp_fname)
                    if enc_fname is None:
                            _log.error('cannot encrypt or, possibly, convert')
                            return None

                    if not removed:
                            _log.error('cannot remove unencrypted file')
                            gmTools.remove_file(enc_fname)
                            return None

                    return enc_fname

            #--------------------------------------------------------
            def __save_doc_obj(self, filename=None, directory=None, passphrase=None, convert2pdf:bool=False):
                    """Save doc object part into target.

                    None: not a doc obj
                    True: success
                    False: failure (to save/convert/encrypt/remove unencrypted)
                    """
                    if self._payload[self._idx['pk_doc_obj']] is None:
                            return None

                    part = self.document_part
                    if filename is None:
                            filename = part.get_useful_filename (
                                    make_unique = False,
                                    directory = directory,
                                    include_gnumed_tag = False,
                                    date_before_type = True,
                                    name_first = False
                            )
                    path, name = os.path.split(filename)
                    filename = os.path.join(path, '%s-%s' % (self._payload[self._idx['list_position']], name))
                    if convert2pdf:
                            target_mime = 'application/pdf'
                            target_ext = '.pdf'
                    else:
                            target_mime = None
                            target_ext = None
                    part_fname = part.save_to_file (
                            filename = filename,
                            target_mime = target_mime,
                            target_extension = target_ext,
                            ignore_conversion_problems = False
                    )
                    if part_fname is None:
                            _log.error('cannot save document part to file')
                            return False

                    if passphrase is None:
                            return part_fname

                    enc_filename = gmCrypto.encrypt_file (
                            filename = part_fname,
                            passphrase = passphrase,
                            verbose = _cfg.get(option = 'debug'),
                            remove_unencrypted = True
                    )
                    removed = gmTools.remove_file(part_fname)
                    if enc_filename is None:
                            _log.error('cannot encrypt')
                            return False

                    if removed:
                            return enc_filename

                    _log.error('cannot remove unencrypted file')
                    gmTools.remove_file(enc_filename)
                    return False

            #--------------------------------------------------------
            def __save_direntry(self, directory=None, passphrase=None):
                    """Move DIRENTRY source into target.

                    None: not a DIRENTRY
                    True: success
                    False: failure
                    """
                    # do not process malformed entries
                    try:
                            tag, node, local_fs_path = self._payload[self._idx['filename']].split('::', 2)
                    except ValueError:
                            _log.exception('malformed DIRENTRY: [%s]', self._payload[self._idx['filename']])
                            return False
                    # source and target paths must not overlap
                    if directory is None:
                            directory = gmTools.mk_sandbox_dir(prefix = 'exp-')
                    if directory.startswith(local_fs_path):
                            _log.error('cannot dump DIRENTRY item [%s]: must not be subdirectory of target dir [%s]', self._payload[self._idx['filename']], directory)
                            return False
                    if local_fs_path.startswith(directory):
                            _log.error('cannot dump DIRENTRY item [%s]: target dir [%s] must not be subdirectory of DIRENTRY', self._payload[self._idx['filename']], directory)
                            return False

                    _log.debug('dumping DIRENTRY item [%s] into [%s]', self._payload[self._idx['filename']], directory)
                    sandbox_dir = gmTools.mk_sandbox_dir()
                    _log.debug('sandbox: %s', sandbox_dir)
                    tmp = gmTools.copy_tree_content(local_fs_path, sandbox_dir)
                    if tmp is None:
                            _log.error('cannot dump DIRENTRY item [%s] into [%s]: copy error', self._payload[self._idx['filename']], sandbox_dir)
                            return False

                    gmTools.remove_file(os.path.join(tmp, DIRENTRY_README_NAME))
                    if passphrase is not None:
                            _log.debug('encrypting sandbox: %s', sandbox_dir)
                            encrypted = gmCrypto.encrypt_directory_content (
                                    directory = sandbox_dir,
                                    passphrase = passphrase,
                                    verbose = _cfg.get(option = 'debug'),
                                    remove_unencrypted = True
                            )
                            if not encrypted:
                                    _log.error('cannot dump DIRENTRY item [%s]: encryption problem in [%s]', self._payload[self._idx['filename']], sandbox_dir)
                                    return False

                    tmp = gmTools.copy_tree_content(sandbox_dir, directory)
                    if tmp is None:
                            _log.debug('cannot dump DIRENTRY item [%s] into [%s]: copy error', self._payload[self._idx['filename']], directory)
                            return False

                    return directory

            #--------------------------------------------------------
            # properties
            #--------------------------------------------------------
            def _get_is_doc_part(self):
                    return self._payload[self._idx['pk_doc_obj']] is not None

            is_document_part = property(_get_is_doc_part)

            #--------------------------------------------------------
            def _get_doc_part(self):
                    if self._payload[self._idx['pk_doc_obj']] is None:
                            return None
                    return gmDocuments.cDocumentPart(aPK_obj = self._payload[self._idx['pk_doc_obj']])

            document_part = property(_get_doc_part)

            #--------------------------------------------------------
            def _get_is_print_job(self):
                    return self._payload[self._idx['designation']] == PRINT_JOB_DESIGNATION

            def _set_is_print_job(self, is_print_job):
                    desig = gmTools.bool2subst(is_print_job, PRINT_JOB_DESIGNATION, None, None)
                    if self._payload[self._idx['designation']] == desig:
                            return
                    self['designation'] = desig
                    self.save()

            is_print_job = property(_get_is_print_job, _set_is_print_job)

            #--------------------------------------------------------
            def _is_DIRENTRY(self):
                    """Check whether this item looks like a DIRENTRY."""
                    if self._payload[self._idx['filename']] is None:
                            return False
                    if not self._payload[self._idx['filename']].startswith('DIR::'):
                            return False
                    if len(self._payload[self._idx['filename']].split('::', 2)) != 3:
                            return False
                    return True

            is_DIRENTRY = property(_is_DIRENTRY)

            #--------------------------------------------------------
            def _is_valid_DIRENTRY(self):
                    """Check whether this item is a _valid_ DIRENTRY."""
                    if not self.is_DIRENTRY:
                            return False
                    # malformed ?
                    try:
                            tag, node, local_fs_path = self._payload[self._idx['filename']].split('::', 2)
                    except ValueError:
                            # should not happen because structure already checked in .is_DIRENTRY,
                            # better safe than sorry
                            _log.exception('DIRENTRY [%s]: malformed', self._payload[self._idx['filename']])
                            return False
                    # this machine ?
                    if node != platform.node():
                            _log.warning('DIRENTRY [%s]: not on this machine (%s)', self._payload[self._idx['filename']], platform.node())
                            return False
                    # valid path ?
                    if not os.path.isdir(local_fs_path):
                            _log.warning('DIRENTRY [%s]: directory not found (old DIRENTRY ?)', self._payload[self._idx['filename']])
                            return False
                    return True

            is_valid_DIRENTRY = property(_is_valid_DIRENTRY)

            #--------------------------------------------------------
            def _is_DICOM_directory(self):
                    """Check whether this item points to a DICOMDIR."""
                    if not self.is_valid_DIRENTRY:
                            return False

                    tag, node, local_fs_path = self._payload[self._idx['filename']].split('::', 2)
                    found_DICOMDIR = False
                    for fs_entry in os.listdir(local_fs_path):
                            # found a subdir
                            if os.path.isdir(os.path.join(local_fs_path, fs_entry)):
                                    # allow for any number of subdirs
                                    continue
                            # found a file
                            if fs_entry != 'DICOMDIR':
                                    # not named "DICOMDIR" -> not a DICOMDIR DIRENTRY
                                    return False

                            # must be named DICOMDIR -> that's the only file allowed (and required) in ./
                            found_DICOMDIR = True
                    return found_DICOMDIR

            is_DICOM_directory = property(_is_DICOM_directory)

            #--------------------------------------------------------
            def _has_files_in_root(self):
                    """True if there are files in the root directory."""
                    tag, node, local_fs_path = self._payload[self._idx['filename']].split('::', 2)
                    for fs_entry in os.listdir(local_fs_path):
                            if os.path.isfile(fs_entry):
                                    _log.debug('has files in top level: %s', local_fs_path)
                                    return True
                    return False

            has_files_in_root = property(_has_files_in_root)

    #------------------------------------------------------------
    def get_export_items(order_by=None, pk_identity=None, designation=None, return_pks=False):

            args = {
                    'pat': pk_identity,
                    'desig': gmTools.coalesce(designation, PRINT_JOB_DESIGNATION)
            }
            where_parts = []
            if pk_identity is not None:
                    where_parts.append('pk_identity = %(pat)s')
                    # note that invalidly linked items will be
                    # auto-healed when instantiated
            if designation is None:
                    where_parts.append("designation IS DISTINCT FROM %(desig)s")
            else:
                    where_parts.append('designation = %(desig)s')
            if order_by is None:
                    order_by = 'pk_identity, list_position'
            order_by = ' ORDER BY %s' % order_by
            cmd = (_SQL_get_export_items % ' AND '.join(where_parts)) + order_by
            rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)
            if return_pks:
                    return [ r['pk_export_item'] for r in rows ]

            return [ cExportItem(row = {'data': r, 'idx': idx, 'pk_field': 'pk_export_item'}) for r in rows ]

    #------------------------------------------------------------
    def get_print_jobs(order_by=None, pk_identity=None):
            return get_export_items(order_by = order_by, pk_identity = pk_identity, designation = PRINT_JOB_DESIGNATION)

    #------------------------------------------------------------
    def create_export_item(description=None, pk_identity=None, pk_doc_obj=None, filename=None):

            args = {
                    'desc': description,
                    'pk_obj': pk_doc_obj,
                    'pk_pat': pk_identity,
                    'fname': filename
            }
            cmd = """
                    INSERT INTO clin.export_item (
                            description,
                            fk_doc_obj,
                            fk_identity,
                            data,
                            filename
                    ) VALUES (
                            gm.nullify_empty_string(%(desc)s),
                            %(pk_obj)s,
                            %(pk_pat)s,
                            (CASE
                                    WHEN %(pk_obj)s IS NULL THEN %(fname)s::bytea
                                    ELSE NULL::bytea
                            END),
                            (CASE
                                    WHEN %(pk_obj)s IS NULL THEN gm.nullify_empty_string(%(fname)s)
                                    ELSE NULL
                            END)
                    )
                    RETURNING pk
            """
            rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}], return_data = True, get_col_idx = False)
            return cExportItem(aPK_obj = rows[0]['pk'])

    #------------------------------------------------------------
    def delete_export_item(pk_export_item=None):
            args = {'pk': pk_export_item}
            cmd = "DELETE FROM clin.export_item WHERE pk = %(pk)s"
            gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
            return True

    #============================================================
    #============================================================
    _FRONTPAGE_HTML_CONTENT = """<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
           "https://www.w3.org/TR/html4/loose.dtd">
    <html>
    <head>
    <meta http-equiv="content-type" content="text/html; charset=UTF-8">
    <link rel="icon" type="image/x-icon" href="gnumed.ico">
    <title>%(html_title_header)s %(html_title_patient)s</title>
    </head>
    <body>

    <h1>%(title)s</h1>

    <p>
    (%(date)s)<br>
    </p>

    <h2><a href="patient.vcf">Patient</a></h2>

    <p>
            %(pat_name)s<br>
            %(pat_dob)s
    </p>

    <p><img src="%(mugshot_url)s" alt="%(mugshot_alt)s" title="%(mugshot_title)s" width="200" border="2"></p>

    <h2>%(docs_title)s</h2>

    <ul>
            <li><a href="./">%(browse_root)s</a></li>
            <li><a href="%(doc_subdir)s/">%(browse_docs)s</a></li>
            %(browse_dicomdir)s
            %(run_dicom_viewer)s
    </ul>

    <ul>
    %(docs_list)s
    </ul>

    <h2><a href="praxis.vcf">Praxis</a></h2>

    <p>
    %(branch)s @ %(praxis)s
    %(adr)s
    </p>

    <p>(<a href="https://www.gnumed.de">GNUmed</a> version %(gm_ver)s)</p>

    </body>
    </html>
    """

    _INDEX_HTML_CONTENT = """<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
           "https://www.w3.org/TR/html4/loose.dtd">
    <html>
    <head>
    <meta http-equiv="content-type" content="text/html; charset=UTF-8">
    <link rel="icon" type="image/x-icon" href="gnumed.ico">
    <title>%(html_title_header)s</title>
    </head>
    <body>

    <h1>%(title)s</h1>

    <p>
    (%(date)s)<br>
    </p>

    This is an encrypted patient data excerpt created by the GNUmed Electronic Medical Record.

    <p>
    For decryption you will need to

    <ul>
            <li>install decryption software and</li>
            <li>obtain relevant passwords from the creator or holder of this media</li>
    </ul>

    <h2>Decryption software</h2>

    For files ending in

    <ul>
            <li>.asc: install <a href="https://gnupg.org">GNU Privacy Guard</a></li>
            <li>.7z: install <a href="https://www.7-zip.org">7-zip</a> or <a href="https://www.winzip.com">WinZip</a></li>
    </ul>

    <h2>%(docs_title)s</h2>

    <ul>
            <li><a href="./frontpage.html">front page (after decryption)</a></li>
            <li><a href="./%(frontpage_fname)s">front page (if decryption from browser is supported)</a></li>

            <li><a href="./">%(browse_root)s</a></li>
            <li><a href="%(doc_subdir)s/">%(browse_docs)s</a></li>
    </ul>

    <h2><a href="praxis.vcf">Praxis</a></h2>

    <p>
    %(branch)s @ %(praxis)s
    %(adr)s
    </p>

    <p>(<a href="https://www.gnumed.de">GNUmed</a> version %(gm_ver)s)</p>

    </body>
    </html>
    """

    #------------------------------------------------------------
    class cExportArea(object):

            def __init__(self, pk_identity):
                    self.__pk_identity = pk_identity

            #--------------------------------------------------------
            def add_form(self, form=None, designation=None):

                    if len(form.final_output_filenames) == 0:
                            return True

                    items = []
                    for fname in form.final_output_filenames:
                            item = self.add_file(filename = fname)
                            if item is None:
                                    for prev_item in items:
                                            delete_export_item(pk_export_item = prev_item['pk_export_item'])
                                    return False
                            items.append(item)
                            item['description'] = _('form: %s %s (%s)') % (form.template['name_long'], form.template['external_version'], fname)
                            item['designation'] = designation
                            item.save()

                    return True

            #--------------------------------------------------------
            def add_forms(self, forms=None, designation=None):
                    all_ok = True
                    for form in forms:
                            all_ok = all_ok and self.add_form(form = form, designation = designation)

                    return all_ok

            #--------------------------------------------------------
            def add_path(self, path, comment=None):
                    """Add a DIR entry to the export area.

                    This sort of entry points to a certain directory on a
                    certain machine. The content of the the directory
                    will be included in exports, the directory *itself*
                    will not. For *that*, use a disposable top-level
                    directory into which you put the directory to include
                    as a subdirectory.
                    """
                    assert (os.path.isdir(path)), '<path> must exist: %s' % path

                    path_item_data = 'DIR::%s::%s/' % (platform.node(), path.rstrip('/'))
                    _log.debug('attempting to add path item [%s]', path_item_data)
                    item = self.path_item_exists(path_item_data)
                    if item is not None:
                            _log.debug('[%s] already in export area', path)
                            return item

                    if comment is None:
                            comment = _('path [%s/] on computer "%s"') % (
                                    path.rstrip('/'),
                                    platform.node()
                            )
                    else:
                            comment += _(' (on "%s")') % platform.node()

                    item = create_export_item (
                            description = comment,
                            pk_identity = self.__pk_identity,
                            filename = path_item_data
                    )
                    try:
                            README = open(os.path.join(path, DIRENTRY_README_NAME), mode = 'wt', encoding = 'utf8')
                            README.write('GNUmed DIRENTRY information\n')
                            README.write('created: %s\n' % gmDateTime.pydt_now_here())
                            README.write('machine: %s\n' % platform.node())
                            README.write('path: %s\n' % path)
                            README.close()
                    except OSError:
                            _log.exception('READONLY DIRENTRY [%s]', path)

                    return item

            #--------------------------------------------------------
            def path_item_exists(self, path_item_data):

                    assert (path_item_data.startswith('DIR::')), 'invalid <path_item_data> [%s]' % path_item_data

                    where_parts = [
                            'pk_identity = %(pat)s',
                            'filename = %(fname)s',
                            'pk_doc_obj IS NULL'
                    ]
                    args = {
                            'pat': self.__pk_identity,
                            'fname': path_item_data
                    }
                    SQL = _SQL_get_export_items % ' AND '.join(where_parts)
                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': SQL, 'args': args}], get_col_idx = True)
                    if len(rows) == 0:
                            return None

                    r = rows[0]
                    return cExportItem(row = {'data': r, 'idx': idx, 'pk_field': 'pk_export_item'})

            #--------------------------------------------------------
            def add_file(self, filename=None, hint=None):
                    try:
                            open(filename).close()
                    except Exception:
                            _log.exception('cannot open file <%s>', filename)
                            return None

                    file_md5 = gmTools.file2md5(filename = filename, return_hex = True)
                    existing_item = self.md5_exists(md5 = file_md5, include_document_parts = False)
                    if existing_item is not None:
                            _log.debug('md5 match (%s): %s already in export area', file_md5, filename)
                            return existing_item

                    path, basename = os.path.split(filename)
                    item = create_export_item (
                            description = '%s: %s (%s/)' % (
                                    gmTools.coalesce(hint, _('file'), '%s'),
                                    basename,
                                    path
                            ),
                            pk_identity = self.__pk_identity,
                            filename = filename
                    )

                    if item.update_data_from_file(filename = filename):
                            return item

                    # failed to insert data, hence remove export item entry
                    delete_export_item(pk_export_item = item['pk_export_item'])
                    return None

            #--------------------------------------------------------
            def add_files(self, filenames=None, hint=None):
                    all_ok = True
                    for fname in filenames:
                            all_ok = all_ok and (self.add_file(filename = fname, hint = hint) is not None)

                    return all_ok

            #--------------------------------------------------------
            def add_documents(self, documents=None):
                    for doc in documents:
                            doc_tag = _('%s (%s)%s') % (
                                    doc['l10n_type'],
                                    gmDateTime.pydt_strftime(doc['clin_when'], '%Y %b %d'),
                                    gmTools.coalesce(doc['comment'], '', ' "%s"')
                            )
                            for obj in doc.parts:
                                    if self.document_part_item_exists(pk_part = obj['pk_obj']):
                                            continue
                                    f_ext = ''
                                    if obj['filename'] is not None:
                                            f_ext = os.path.splitext(obj['filename'])[1].strip('.').strip()
                                    if f_ext != '':
                                            f_ext = ' .' + f_ext.upper()
                                    obj_tag = _('part %s (%s%s)%s') % (
                                            obj['seq_idx'],
                                            gmTools.size2str(obj['size']),
                                            f_ext,
                                            gmTools.coalesce(obj['obj_comment'], '', ' "%s"')
                                    )
                                    create_export_item (
                                            description = '%s - %s' % (doc_tag, obj_tag),
                                            pk_doc_obj = obj['pk_obj']
                                    )

            #--------------------------------------------------------
            def document_part_item_exists(self, pk_part=None):
                    cmd = "SELECT EXISTS (SELECT 1 FROM clin.export_item WHERE fk_doc_obj = %(pk_obj)s)"
                    args = {'pk_obj': pk_part}
                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
                    return rows[0][0]

            #--------------------------------------------------------
            def md5_exists(self, md5=None, include_document_parts=False):
                    where_parts = [
                            'pk_identity = %(pat)s',
                            'md5_sum = %(md5)s'
                    ]
                    args = {
                            'pat': self.__pk_identity,
                            'md5': md5
                    }

                    if not include_document_parts:
                            where_parts.append('pk_doc_obj IS NULL')

                    cmd = _SQL_get_export_items % ' AND '.join(where_parts)
                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)

                    if len(rows) == 0:
                            return None

                    r = rows[0]
                    return cExportItem(row = {'data': r, 'idx': idx, 'pk_field': 'pk_export_item'})

            #--------------------------------------------------------
            def remove_item(self, item):
                    if item.is_valid_DIRENTRY:
                            tag, node, local_fs_path = item['filename'].split('::', 2)
                            gmTools.remove_file(os.path.join(local_fs_path, DIRENTRY_README_NAME))
                    elif item.is_DIRENTRY:
                            return False

                    return delete_export_item(pk_export_item = item['pk_export_item'])

            #--------------------------------------------------------
            def dump_items_to_disk(self, base_dir:str=None, items:list=None, passphrase:str=None, convert2pdf:bool=False) -> str:
                    """Dump export area items to disk.

                    Args:
                            base_dir: directory into which to dump the items, defaults to a new sandbox directory
                            items: which items to dump, defaults to all items
                            passphrase: used to symmetrically encrypt dumped files, if set
                            convert2pdf: attempt to convert items into PDF before dumping them

                    Returns:
                            The base_dir into which items were dumped, or None.
                    """
                    if items is None:
                            items = self.items
                    if len(items) == 0:
                            return None

                    if base_dir is None:
                            base_dir = gmTools.mk_sandbox_dir()
                    else:
                            gmTools.mkdir(base_dir)
                    _log.debug('dumping export items to: %s', base_dir)
                    for item in items:
                            saved_fname = item.save_to_file(directory = base_dir, passphrase = passphrase, convert2pdf = convert2pdf)
                            if saved_fname is None:
                                    return None

                            if passphrase:
                                    store_passphrase_of_file(filename = saved_fname, passphrase = passphrase, hash_type = 'sha256')

                    return base_dir

            #--------------------------------------------------------
            def dump_items_to_disk_as_zip(self, base_dir:str=None, items:list=None, passphrase:str=None) -> str:
                    """Dump items to disk into a zip archive.

                            Calls dump_items_to_disk().

                    Args:
                            base_dir: directory into which to dump the items, defaults to a new sandbox directory
                            items: which items to dump, defaults to all items
                            passphrase: used to symmetrically encrypt dumped files, if set

                    Returns:
                            Zip archive name, or None.
                    """
                    _log.debug('target dir: %s', base_dir)
                    dump_dir = self.dump_items_to_disk(base_dir = base_dir, items = items)
                    if dump_dir is None:
                            _log.error('cannot dump export area items')
                            return None

                    if passphrase:
                            zip_file = gmCrypto.create_encrypted_zip_archive_from_dir (
                                    source_dir = dump_dir,
                                    comment = _('GNUmed Patient Media'),
                                    overwrite = True,
                                    passphrase = passphrase,
                                    verbose = _cfg.get(option = 'debug')
                            )
                            if zip_file:
                                    store_passphrase_of_file(filename = zip_file, passphrase = passphrase, hash_type = 'sha256')
                            else:
                                    _log.error('cannot zip+encrypt export area items dump')
                            return zip_file

                    zip_file = gmCrypto.create_zip_archive_from_dir (
                            dump_dir,
                            comment = _('GNUmed Patient Media'),
                            overwrite = True,
                            verbose = _cfg.get(option = 'debug')
                    )
                    if not zip_file:
                            _log.error('cannot zip export area items dump')
                    return zip_file

            #--------------------------------------------------------
            def export(self, base_dir=None, items=None, passphrase=None):
                    """Export items as structured patient media.

                    Args:
                            base_dir: directory into which to store the export, defaults to a new sandbox directory based on patient name
                            items: which items to dump, defaults to all items
                            passphrase: used to symmetrically encrypt dumped files, if set

                    Returns:
                            Base_dir name, else None or False on failure.
                    """
                    if items is None:
                            items = self.items
                    if len(items) == 0:
                            return None

                    from Gnumed.business.gmPerson import cPatient
                    pat = cPatient(aPK_obj = self.__pk_identity)
                    target_base_dir = base_dir
                    if target_base_dir is None:
                            target_base_dir = gmTools.mk_sandbox_dir(prefix = '%s-' % pat.subdir_name)
                    gmTools.mkdir(target_base_dir)
                    _log.debug('patient media base dir: %s', target_base_dir)
                    if not gmTools.dir_is_empty(target_base_dir):
                            _log.error('patient media base dir is not empty')
                            return False

                    from Gnumed.business.gmPraxis import gmCurrentPraxisBranch
                    prax = gmCurrentPraxisBranch()

                    html_data = {}

                    # 1) assemble everything in a sandbox
                    # - setup sandbox
                    sandbox_dir = gmTools.mk_sandbox_dir()
                    _log.debug('sandbox dir: %s', sandbox_dir)
                    doc_dir = os.path.join(sandbox_dir, DOCUMENTS_SUBDIR)
                    gmTools.mkdir(doc_dir)
                    # - export mugshot
                    mugshot = pat.document_folder.latest_mugshot
                    if mugshot is not None:
                            mugshot_fname = mugshot.save_to_file(directory = doc_dir)
                            fname = os.path.split(mugshot_fname)[1]
                            html_data['mugshot_url'] = os.path.join(DOCUMENTS_SUBDIR, fname)
                            html_data['mugshot_alt'] =_('patient photograph from %s') % gmDateTime.pydt_strftime(mugshot['date_generated'], '%B %Y')
                            html_data['mugshot_title'] = gmDateTime.pydt_strftime(mugshot['date_generated'], '%B %Y')
                    # - export patient demographics as GDT/XML/VCF/MCF
                    pat.export_as_gdt(filename = os.path.join(sandbox_dir, 'patient.gdt'))
                    pat.export_as_xml_linuxmednews(filename = os.path.join(sandbox_dir, 'patient.xml'))
                    pat.export_as_vcard(filename = os.path.join(sandbox_dir, 'patient.vcf'))
                    pat.export_as_mecard(filename = os.path.join(sandbox_dir, u'patient.mcf'))
                    # - create CD.INF
                    self._create_cd_inf(pat, sandbox_dir)
                    # - export items
                    docs_list = []
                    for item in items:
                            # if it is a dicomdir - put it into the root of the target media
                            if item.is_DICOM_directory:
                                    _log.debug('exporting DICOMDIR DIRENTRY')
                                    # save into base dir
                                    item_fname = item.save_to_file(directory = sandbox_dir)
                                    # do not include into ./documents/ listing
                                    continue
                            if item.is_valid_DIRENTRY:
                                    _log.debug('exporting DIRENTRY')
                                    # if there are files in the root dir: put it into a
                                    # subdir of ./documents/ where subdir is the leaf
                                    # of the item .filename
                                    if item.has_files_in_root:
                                            tag, node, local_fs_path = item['filename'].split('::', 2)
                                            subdir = local_fs_path.rstrip('/').split('/')[-1]
                                            subdir = os.path.join(doc_dir, subdir)
                                            gmTools.mkdir(subdir)
                                            item_fname = item.save_to_file(directory = subdir)
                                    # if it is subdirs only - put it into documents/ directly
                                    else:
                                            item_fname = item.save_to_file(directory = doc_dir)
                                    # include into ./documents/ listing
                                    fname = os.path.split(item_fname)[1]
                                    docs_list.append([fname, gmTools.html_escape_string(item['description'])])
                                    continue
                            if item.is_DIRENTRY:
                                    # DIRENTRY but not valid: skip
                                    continue
                            # normal entry, doc obj links or data item
                            item_fname = item.save_to_file(directory = doc_dir)
                            fname = os.path.split(item_fname)[1]
                            # collect items so we can later correlate items and descriptions
                            # actually we should link to encrypted items, and to unencrypted ones
                            docs_list.append([fname, gmTools.html_escape_string(item['description'])])
                    # - link to DICOMDIR if exists
                    if 'DICOMDIR' in os.listdir(sandbox_dir):       # in root path
                            has_dicomdir = True
                            html_data['browse_dicomdir'] = '<li><a href="./DICOMDIR">%s</a></li>' % _('show DICOMDIR file')
                    else:
                            has_dicomdir = False
                    # - include DWV link if there is a DICOMDIR
                    if has_dicomdir:
                            # do not clone into media base to avoid encryption,
                            # DWV will be cloned to there later on
                            dwv_sandbox_dir = self._clone_dwv()
                            if dwv_sandbox_dir is not None:
                                    html_data['run_dicom_viewer'] = '<li><a href="./dwv/viewers/mobile-local/index.html">%s</a></li>' % _('run Radiology Images (DICOM) Viewer')
                    # - create frontpage.html
                    frontpage_fname = self._create_frontpage_html(pat, prax, sandbox_dir, html_data, docs_list)
                    # - start.html (just a convenience copy of frontpage.html)
                    #   (later overwritten, if encryption is requested)
                    start_fname = os.path.join(sandbox_dir, 'start.html')
                    try:
                            shutil.copy2(frontpage_fname, start_fname)
                    except Exception:
                            _log.exception('cannot copy %s to %s', frontpage_fname, start_fname)
                    # - index.html (just a convenience copy of frontpage.html)
                    #   (later overwritten if encryption is requested)
                    index_fname = os.path.join(sandbox_dir, 'index.html')
                    try:
                            shutil.copy2(frontpage_fname, index_fname)
                    except Exception:
                            _log.exception('cannot copy %s to %s', frontpage_fname, index_fname)

                    # 2) encrypt content of sandbox
                    if passphrase is not None:
                            encrypted = gmCrypto.encrypt_directory_content (
                                    directory = sandbox_dir,
                                    receiver_key_ids = None,
                                    passphrase = passphrase,
                                    comment = None,
                                    verbose = _cfg.get(option = 'debug'),
                                    remove_unencrypted = True,
                                    store_passphrase_cb = store_passphrase_of_file_callback
                            )
                            if not encrypted:
                                    _log.errror('cannot encrypt data in sandbox dir')
                                    return False

                    # 3) add never-to-be-encrypted data
                    # - AUTORUN.INF
                    # - README
                    if passphrase:
                            self._create_autorun_inf(None, sandbox_dir)
                            self._create_readme(None, sandbox_dir)
                    else:
                            self._create_autorun_inf(pat, sandbox_dir)
                            self._create_readme(pat, sandbox_dir)
                    # - praxis VCF/MCF
                    shutil.move(prax.vcf, os.path.join(sandbox_dir, 'praxis.vcf'))
                    prax.export_as_mecard(filename = os.path.join(sandbox_dir, u'praxis.mcf'))
                    # - include DWV code
                    if has_dicomdir:
                            self._clone_dwv(target_dir = sandbox_dir)
                    # - index.html as boilerplate for decryption
                    if passphrase:
                            index_fname = self._create_index_html(prax, sandbox_dir, html_data)

                    # 4) move sandbox to target dir
                    target_dir = gmTools.copy_tree_content(sandbox_dir, target_base_dir)
                    if target_dir is None:
                            _log.error('cannot fill target base dir')
                            return False

                    return target_dir

            #--------------------------------------------------------
            def export_as_zip(self, base_dir=None, items=None, passphrase=None):
                    _log.debug('target dir: %s', base_dir)
                    export_dir = self.export(base_dir = base_dir, items = items)
                    if export_dir is None:
                            _log.debug('cannot export items')
                            return None

                    if passphrase:
                            zip_file = gmCrypto.create_encrypted_zip_archive_from_dir (
                                    export_dir,
                                    comment = _('GNUmed Patient Media'),
                                    overwrite = True,
                                    passphrase = passphrase,
                                    verbose = _cfg.get(option = 'debug')
                            )
                            if zip_file:
                                    store_passphrase_of_file(filename = zip_file, passphrase = passphrase, hash_type = 'sha256')
                            else:
                                    _log.debug('cannot create zip archive')
                            return zip_file

                    zip_file = gmCrypto.create_zip_archive_from_dir (
                            export_dir,
                            comment = _('GNUmed Patient Media'),
                            overwrite = True,
                            verbose = _cfg.get(option = 'debug')
                    )
                    if not zip_file:
                            _log.debug('cannot create zip archive')
                    return zip_file

            #--------------------------------------------------------
            def _create_index_html(self, praxis, directory, data):
                    # header part
                    _HTML_data = {
                            'html_title_header': _('Patient data'),
                            'title': _('Patient data excerpt'),
                            'docs_title': _('Documents'),
                            'browse_root': _('browse storage medium'),
                            'browse_docs': _('browse documents area'),
                            'doc_subdir': DOCUMENTS_SUBDIR,
                            'date' : gmTools.html_escape_string(gmDateTime.pydt_strftime(gmDateTime.pydt_now_here(), format = '%Y %B %d'))
                    }
                    frontpage_fname_enc = 'frontpage.html.asc'
                    if os.path.isfile(os.path.join(directory, frontpage_fname_enc)):
                            _HTML_data['frontpage_fname'] = frontpage_fname_enc
                    frontpage_fname_enc = 'frontpage.html.7z'
                    if os.path.isfile(os.path.join(directory, frontpage_fname_enc)):
                            _HTML_data['frontpage_fname'] = frontpage_fname_enc
                    # footer part
                    lines = []
                    adr = praxis.branch.org_unit.address
                    if adr is not None:
                            lines.extend(adr.format())
                    for comm in praxis.branch.org_unit.comm_channels:
                            if comm['is_confidential'] is True:
                                    continue
                            lines.append('%s: %s' % (
                                    comm['l10n_comm_type'],
                                    comm['url']
                            ))
                    adr = ''
                    if len(lines) > 0:
                            adr = gmTools.html_escape_string('\n'.join(lines), replace_eol = True, keep_visual_eol = True)
                    _HTML_data['branch'] = gmTools.html_escape_string(praxis['branch'])
                    _HTML_data['praxis'] = gmTools.html_escape_string(praxis['praxis'])
                    _HTML_data['gm_ver'] = gmTools.html_escape_string(gmTools.coalesce(_cfg.get(option = 'client_version'), 'git HEAD'))
                    _HTML_data['adr'] = adr
                    # create file
                    index_fname = os.path.join(directory, 'index.html')
                    index_file = open(index_fname, mode = 'wt', encoding = 'utf8')
                    index_file.write(_INDEX_HTML_CONTENT % _HTML_data)
                    index_file.close()
                    return index_fname

            #--------------------------------------------------------
            def _create_frontpage_html(self, patient, praxis, directory, data, docs_list):
                    # <li><a href="documents/filename-1.ext">document 1 description</a></li>
                    _HTML_LIST_ITEM = '     <li><a href="%s">%s</a></li>'
                    # header part
                    _HTML_data = {
                            'html_title_header': _('Patient data for'),
                            'html_title_patient': gmTools.html_escape_string(patient.get_description_gender(with_nickname = False) + ', ' + _('born') + ' ' + patient.get_formatted_dob('%Y %B %d')),
                            'title': _('Patient data excerpt'),
                            'pat_name': gmTools.html_escape_string(patient.get_description_gender(with_nickname = False)),
                            'pat_dob': gmTools.html_escape_string(_('born') + ' ' + patient.get_formatted_dob('%Y %B %d')),
                            'mugshot_url': 'documents/no-such-file.png',
                            'mugshot_alt': _('no patient photograph available'),
                            'mugshot_title': '',
                            'docs_title': _('Documents'),
                            'browse_root': _('browse storage medium'),
                            'browse_docs': _('browse documents area'),
                            'doc_subdir': DOCUMENTS_SUBDIR,
                            'browse_dicomdir': '',
                            'run_dicom_viewer': '',
                            'date' : gmTools.html_escape_string(gmDateTime.pydt_strftime(gmDateTime.pydt_now_here(), format = '%Y %B %d'))
                    }
                    for key in data:
                            _HTML_data[key] = data[key]

                    # documents part
                    _HTML_docs_list = []
                    for doc in docs_list:
                            subdir = os.path.join(directory, DOCUMENTS_SUBDIR, doc[0])
                            if os.path.isdir(subdir):
                                    _HTML_docs_list.append(_HTML_LIST_ITEM % (os.path.join(DOCUMENTS_SUBDIR, doc[0]), _('DIRECTORY: %s/%s/') % (DOCUMENTS_SUBDIR, doc[0])))
                                    _HTML_docs_list.append('        <ul>')
                                    for fname in os.listdir(subdir):
                                            tmp = os.path.join(subdir, fname)
                                            if os.path.isdir(tmp):
                                                    _HTML_docs_list.append('                <li><a href="%s">%s</a></li>' % (os.path.join(DOCUMENTS_SUBDIR, doc[0], fname), _('DIRECTORY: %s/%s/%s/') % (DOCUMENTS_SUBDIR, doc[0], fname)))
                                            else:
                                                    _HTML_docs_list.append('                <li><a href="%s">%s</a></li>' % (os.path.join(DOCUMENTS_SUBDIR, doc[0], fname), fname))
                                    _HTML_docs_list.append('        </ul>')
                            else:
                                    _HTML_docs_list.append(_HTML_LIST_ITEM % (os.path.join(DOCUMENTS_SUBDIR, doc[0]), doc[1]))
                    _HTML_data['docs_list'] = u'\n  '.join(_HTML_docs_list)

                    # footer part
                    lines = []
                    adr = praxis.branch.org_unit.address
                    if adr is not None:
                            lines.extend(adr.format())
                    for comm in praxis.branch.org_unit.comm_channels:
                            if comm['is_confidential'] is True:
                                    continue
                            lines.append('%s: %s' % (
                                    comm['l10n_comm_type'],
                                    comm['url']
                            ))
                    adr = ''
                    if len(lines) > 0:
                            adr = gmTools.html_escape_string('\n'.join(lines), replace_eol = True, keep_visual_eol = True)
                    _HTML_data['branch'] = gmTools.html_escape_string(praxis['branch'])
                    _HTML_data['praxis'] = gmTools.html_escape_string(praxis['praxis'])
                    _HTML_data['gm_ver'] = gmTools.html_escape_string(gmTools.coalesce(_cfg.get(option = 'client_version'), 'git HEAD'))
                    _HTML_data['adr'] = adr
                    # create file
                    frontpage_fname = os.path.join(directory, 'frontpage.html')
                    frontpage_file = open(frontpage_fname, mode = 'wt', encoding = 'utf8')
                    frontpage_file.write(_FRONTPAGE_HTML_CONTENT % _HTML_data)
                    frontpage_file.close()
                    return frontpage_fname

            #--------------------------------------------------------
            def _clone_dwv(self, target_dir=None):
                    _log.debug('cloning dwv')
                    # find DWV
                    dwv_src_dir = os.path.join(gmTools.gmPaths().local_base_dir, 'resources', 'dwv4export')
                    if not os.path.isdir(dwv_src_dir):
                            _log.debug('[%s] not found', dwv_src_dir)
                            dwv_src_dir = os.path.join(gmTools.gmPaths().system_app_data_dir, 'resources', 'dwv4export')
                    if not os.path.isdir(dwv_src_dir):
                            _log.debug('[%s] not found', dwv_src_dir)
                            return None
                    # clone it
                    if target_dir is None:
                            target_dir = gmTools.mk_sandbox_dir()
                    dwv_target_dir = os.path.join(target_dir, 'dwv')
                    gmTools.rmdir(dwv_target_dir)
                    try:
                            shutil.copytree(dwv_src_dir, dwv_target_dir)
                    except (shutil.Error, OSError):
                            _log.exception('cannot include DWV, skipping')
                            return None

                    return dwv_target_dir

            #--------------------------------------------------------
            def _create_readme(self, patient, directory):
                    _README_CONTENT = (
                            'This is a patient data excerpt created by the GNUmed Electronic Medical Record.\n'
                            '\n'
                            'Patient: %s\n'
                            '\n'
                            'Please display <frontpage.html> to browse patient data.\n'
                            '\n'
                            'Individual documents are stored in the subdirectory\n'
                            '\n'
                            '       documents/\n'
                            '\n'
                            '\n'
                            'Data may need to be decrypted with either GNU Privacy\n'
                            'Guard or 7zip/WinZip.\n'
                            '\n'
                            '.asc:\n'
                            '       https://gnupg.org\n'
                            '\n'
                            '.7z:\n'
                            '       https://www.7-zip.org\n'
                            '       https://www.winzip.com\n'
                            '\n'
                            'To obtain any needed keys you will have to get in touch with\n'
                            'the creator or the owner of this patient media excerpt.\n'
                    )
                    readme_fname = os.path.join(directory, 'README')
                    readme_file = open(readme_fname, mode = 'wt', encoding = 'utf8')
                    if patient is None:
                            pat_str = _('<protected>')
                    else:
                            pat_str = patient.get_description_gender(with_nickname = False) + ', ' + _('born') + ' ' + patient.get_formatted_dob('%Y %B %d')
                    readme_file.write(_README_CONTENT % pat_str)
                    readme_file.close()
                    return readme_fname

            #--------------------------------------------------------
            def _create_cd_inf(self, patient, directory):
                    _CD_INF_CONTENT = (
                            '[Patient Info]\r\n'                                    # needs \r\n for Windows
                            'PatientName=%s, %s\r\n'
                            'Gender=%s\r\n'
                            'BirthDate=%s\r\n'
                            'CreationDate=%s\r\n'
                            'PID=%s\r\n'
                            'EMR=GNUmed\r\n'
                            'Version=%s\r\n'
                            '#StudyDate=\r\n'
                            '#VNRInfo=<body part>\r\n'
                            '\r\n'
                            '# name format: lastnames, firstnames\r\n'
                            '# date format: YYYY-MM-DD (ISO 8601)\r\n'
                            '# gender format: %s\r\n'
                    )
                    fname = os.path.join(directory, 'CD.INF')
                    cd_inf = open(fname, mode = 'wt', encoding = 'utf8')
                    cd_inf.write(_CD_INF_CONTENT % (
                            patient['lastnames'],
                            patient['firstnames'],
                            gmTools.coalesce(patient['gender'], '?'),
                            patient.get_formatted_dob('%Y-%m-%d'),
                            gmDateTime.pydt_strftime(gmDateTime.pydt_now_here(), format = '%Y-%m-%d'),
                            patient.ID,
                            _cfg.get(option = 'client_version'),
                            ' / '.join([ '%s = %s (%s)' % (g['tag'], g['label'], g['l10n_label']) for g in patient.gender_list ])
                    ))
                    cd_inf.close()
                    return fname

            #--------------------------------------------------------
            def _create_autorun_inf(self, patient, directory):
                    _AUTORUN_INF_CONTENT = (                                                        # needs \r\n for Windows
                            '[AutoRun.Amd64]\r\n'                                   # 64 bit
                            'label=%(label)s\r\n'                                   # patient name/DOB
                            'shellexecute=index.html\r\n'
                            'action=%(action)s\r\n'                                 # % _('Browse patient data')
                            '%(icon)s\r\n'                                                  # "icon=gnumed.ico" or ""
                            'UseAutoPlay=1\r\n'
                            '\r\n'
                            '[AutoRun]\r\n'                                                 # 32 bit
                            'label=%(label)s\r\n'                                   # patient name/DOB
                            'shellexecute=index.html\r\n'
                            'action=%(action)s\r\n'                                 # % _('Browse patient data')
                            '%(icon)s\r\n'                                                  # "icon=gnumed.ico" or ""
                            'UseAutoPlay=1\r\n'
                            '\r\n'
                            '[Content]\r\n'
                            'PictureFiles=yes\r\n'
                            'VideoFiles=yes\r\n'
                            'MusicFiles=no\r\n'
                            '\r\n'
                            '[IgnoreContentPaths]\r\n'
                            '\documents\r\n'
                            '\r\n'
                            '[unused]\r\n'
                            'open=requires explicit executable\r\n'
                    )
                    autorun_dict = {
                            'label': self._compute_autorun_inf_label(patient),
                            'action': _('Browse patient data'),
                            'icon': ''
                    }
                    media_icon_kwd = '$$gnumed_patient_media_export_icon'
                    media_icon_kwd_exp = gmKeywordExpansion.get_expansion (
                            keyword = media_icon_kwd,
                            textual_only = False,
                            binary_only = True
                    )
                    icon_tmp_fname = media_icon_kwd_exp.save_to_file (
                            target_mime = 'image/x-icon',
                            target_extension = '.ico',
                            ignore_conversion_problems = True
                    )
                    if icon_tmp_fname is None:
                            _log.error('cannot retrieve <%s>', media_icon_kwd)
                    else:
                            media_icon_fname = os.path.join(directory, 'gnumed.ico')
                            try:
                                    shutil.copy2(icon_tmp_fname, media_icon_fname)
                                    autorun_dict['icon'] = 'icon=gnumed.ico'
                            except Exception:
                                    _log.exception('cannot move %s to %s', icon_tmp_fname, media_icon_fname)
                    autorun_fname = os.path.join(directory, 'AUTORUN.INF')
                    autorun_file = open(autorun_fname, mode = 'wt', encoding = 'cp1252', errors = 'replace')
                    autorun_file.write(_AUTORUN_INF_CONTENT % autorun_dict)
                    autorun_file.close()
                    return autorun_fname

            #--------------------------------------------------------
            def _compute_autorun_inf_label(self, patient):
                    if patient is None:
                            # if no patient provided - assume the target media
                            # is to be encrypted and thusly do not expose patient data,
                            # AUTORUN.INF itself will not be encrypted because
                            # Windows must be able to parse it
                            return _('GNUmed patient data excerpt')[:32]

                    LABEL_MAX_LEN = 32
                    dob = patient.get_formatted_dob(format = ' %Y%m%d', none_string = '', honor_estimation = False)
                    if dob == '':
                            gender_template = ' (%s)'
                    else:
                            gender_template = ' %s'
                    gender = gmTools.coalesce(patient['gender'], '', gender_template)
                    name_max_len = LABEL_MAX_LEN - len(gender) - len(dob)                   # they already include appropriate padding
                    name = patient.active_name
                    last = name['lastnames'].strip()
                    first = name['firstnames'].strip()
                    len_last = len(last)
                    len_first = len(first)
                    while (len_last + len_first + 1) > name_max_len:
                            if len_first > 6:
                                    len_first -= 1
                                    if first[len_first - 1] == ' ':
                                            len_first -= 1
                                    continue
                            len_last -= 1
                            if last[len_last - 1] == ' ':
                                    len_last -= 1
                    last = last[:len_last].strip().upper()
                    first = first[:len_first].strip()
                    # max 32 chars, supposedly ASCII, but CP1252 likely works pretty well
                    label = (('%s %s%s%s' % (last, first, dob,      gender)).strip())[:32]
                    return label

            #--------------------------------------------------------
            # properties
            #--------------------------------------------------------
            def get_items(self, designation=None, order_by='pk_identity, list_position, designation, description'):
                    return get_export_items(order_by = order_by, pk_identity = self.__pk_identity, designation = designation)

            items = property(get_items)

            #--------------------------------------------------------
            def get_printouts(self, order_by='list_position, designation, description'):
                    return get_print_jobs(order_by = order_by, pk_identity = self.__pk_identity)

            printouts = property(get_printouts)

    #===========================================================================
    # passphrase escrow
    #---------------------------------------------------------------------------
    def store_passphrase_of_file_callback(filename:str=None, passphrase:str=None, comment:dict=None):
            return store_passphrase_of_file (
                    filename = filename,
                    passphrase = passphrase,
                    hash_type = 'sha256',
                    comment = comment
            )

    #---------------------------------------------------------------------------
    def store_passphrase_of_file(filename:str=None, passphrase:str=None, hash_type:str='md5', comment:dict=None) -> bool:
            """Call store_object_passphrase on a given file."""
            try:
                    f = open(filename, 'rb')
            except Exception:
                    _log.exception('cannot open [%s]', filename)
                    return False

            if comment is None:
                    comment = {}
            comment['__filename__'] = filename
            return store_object_passphrase (
                    obj = f,
                    passphrase = passphrase,
                    hash_type = hash_type,
                    comment = comment
            )

    #---------------------------------------------------------------------------
    def store_object_passphrase(obj=None, passphrase:str=None, hash_type:str='md5', owner=None, comment:dict=None) -> bool:
            """Store in the database the (encrypted) passphrase for an object.

            The passphrase is stored encrypted with the public key of
            the owner as well as with any public key configured as a
            passphrase trustee.

            Args:
                    obj: an instance supporting the (binary) read protocol
                    passphrase: the passphrase to store
                    hash_type: the hash to use, defaults to 'md5'
                    owner: staff member to encrypt passphrase to (by public key), defaults to current provider
                    comment: a structured comment on the object

            Returns:
                    True/False based on success
            """
            assert obj, '<obj> must not be None'
            assert passphrase, '<passphrase> must not be None'

            if hash_type not in hashlib.algorithms_available:
                    _log.error('hash type [%s] not available amongst %s', hash_type, hashlib.algorithms_available)
                    return False

            pubkey_files = []
            if owner is None:
                    owner = gmStaff.gmCurrentProvider()
            owner_key_file = owner.public_key_file
            if owner_key_file:
                    pubkey_files.append(owner_key_file)
            else:
                    _log.warning('no public key for owner [%s]', owner)
            trustee_key_files = gmStaff.get_public_keys_of_passphrase_trustees(as_files = True)
            if trustee_key_files:
                    pubkey_files.extend(trustee_key_files)
            else:
                    _log.warning('there are no trustee public keys configured for passphrase escrow')
            if not pubkey_files:
                    _log.error('cannot escrow passphrase, neither owner nor trustee public keys available')
                    return False

            hashor = hashlib.new(hash_type, usedforsecurity = False)
            chunk_size = 5 * 1024 * 1024
            data = obj.read(chunk_size)
            while data:
                    hashor.update(data)
                    data = obj.read(chunk_size)
            hash_val = hashor.hexdigest()
            encrypted_phrase = gmCrypto.encrypt_data_with_gpg (
                    data = passphrase,
                    recipient_key_files = pubkey_files,
                    comment = '[%s]::%s' % (hash_type, hash_val),
                    verbose = _cfg.get(option = 'debug')
            )
            SQL = """INSERT INTO gm.obj_export_passphrase (
                    hash_type, hash, phrase, description
            ) VALUES (
                    %(hash_type)s,
                    %(hash)s,
                    %(phrase)s,
                    %(desc)s
            )"""
            args = {
                    'hash_type': hash_type,
                    'hash': hash_val,
                    'phrase': encrypted_phrase,
                    'desc': comment
            }
            gmPG2.run_rw_queries(queries = [{'cmd': SQL, 'args': args}])
            return True

    #---------------------------------------------------------------------------
    def save_file_passphrases_into_files() -> list[str]: # | None:
            try:
                    hash_val = input('Please enter the file hash: ')
            except KeyboardInterrupt:
                    return None

            return save_object_passphrase_to_file(hash_val)

    #---------------------------------------------------------------------------
    def save_object_passphrase_to_file(hash:str=None) -> list[str]:
            """Save encrypted passphrases known for a hash into files.

            Args:
                    hash: the hash to look up passphrases for

            Returns
                    List of files containing encrypted passphrases, or None.
            """
            SQL = 'SELECT * FROM gm.obj_export_passphrase WHERE hash = %(hash)s'
            args = {'hash': hash}
            rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': SQL, 'args': args}])
            if not rows:
                    return None

            phrase_files = []
            for row in rows:
                    phrasefile_name = '%s-%s-passphrase.txt.asc' % (row['hash'], row['hash_type'])
                    with open(phrasefile_name, mode = 'wt', encoding = 'utf8') as phrasefile:
                            phrasefile.write('%s: %s\n' % (row['hash_type'], row['hash']))
                            if row['description']:
                                    phrasefile.write('%s' % row['description'])
                                    phrasefile.write('\n')
                            phrasefile.write('\n')
                            phrasefile.write(row['phrase'])
                    phrase_files.append(phrasefile_name)
            return phrase_files

    #============================================================
    #============================================================
    if __name__ == '__main__':

            if len(sys.argv) < 2:
                    sys.exit()

            if sys.argv[1] != 'test':
                    sys.exit()

            del _
            from Gnumed.pycommon import gmI18N
            gmI18N.activate_locale()
            gmI18N.install_domain()

            from Gnumed.business import gmPraxis

            #---------------------------------------
            def test_export_items():
    #               items = get_export_items()
    #               for item in items:
    #                       print item.format()
                    import random
                    create_export_item(description = 'description %s' % random.random(), pk_identity = 12, pk_doc_obj = None, filename = 'dummy.dat')
                    items = get_export_items()
                    for item in items:
                            print(item.format())
                    item['pk_doc_obj'] = 1
                    item.save()
                    print(item)

            #---------------------------------------
            def test_export_area():
                    exp = cExportArea(12)
                    #print exp.export_with_meta_data()
                    #print exp.items
                    #exp.add_file(sys.argv[2])
                    #prax =
                    gmPraxis.gmCurrentPraxisBranch(branch = gmPraxis.cPraxisBranch(1))
                    #print(prax)
                    #print(prax.branch)
                    #try:
                    #       pwd = sys.argv[2]
                    #except IndexError:
                    #       pwd = None
                    #print(exp.export(passphrase = pwd))
                    #for item in exp.items:
                    #       print(item)
                    #       item['list_position'] = 4
                    #       item.save()
                    #       print(item)
                    #       input()
                    print(exp.dump_items_to_disk())

            #---------------------------------------
            def test_label():

                    from Gnumed.business.gmPerson import cPatient
                    #from Gnumed.business.gmPersonSearch import ask_for_patient

                    #while ask_for_patient() is not None:
                    pat_min = 1
                    pat_max = 100
                    try:
                            pat_min = int(sys.argv[2])
                            pat_max = int(sys.argv[3])
                    except Exception:
                            pass
                    cPatient(aPK_obj = pat_min)
                    f = open('x-auto_inf_labels.txt', mode = 'w', encoding = 'utf8')
                    f.write('--------------------------------\n')
                    f.write('12345678901234567890123456789012\n')
                    f.write('--------------------------------\n')
                    for pat_id in range(pat_min, pat_max):
                            try:
                                    exp_area = cExportArea(pat_id)
                                    pat = cPatient(aPK_obj = pat_id)
                            except Exception:
                                    continue
                            f.write(exp_area._compute_autorun_inf_label(pat) + '\n')
                    f.close()
                    return

            #---------------------------------------
            def test_store_passphrase_of_file():
                    gmStaff.set_current_provider_to_logged_on_user()
                    print('file:', sys.argv[2])
                    for h_t in [None, 'md5', 'sha256', 'ripemd160', 'invalid_hash_type']:
                            print(h_t, '-', store_passphrase_of_file(filename = sys.argv[2], passphrase='12345', hash_type = h_t))

            #---------------------------------------
            def test_save_object_passphrase_to_file():
                    print(save_object_passphrase_to_file(hash = sys.argv[2]))

            #---------------------------------------
            #test_export_items()

            gmPG2.request_login_params(setup_pool = True)
            #test_export_area()
            #test_label()
            test_store_passphrase_of_file()
            #test_save_object_passphrase_to_file()

    #============================================================
    # CDROM "run.bat":
    #
    #@echo off
    #
    #if defined ProgramFiles(x86) (
    #    ::64-bit
    #    start /B x64\mdicom.exe /scan .
    #) else (
    #    ::32-bit
    #    start /B win32\mdicom.exe /scan .
    #)
    #
    #--------------------------------------------------

## Functions

`def create_export_item(description=None, pk_identity=None, pk_doc_obj=None, filename=None)`
  Expand source code

      def create_export_item(description=None, pk_identity=None, pk_doc_obj=None, filename=None):

              args = {
                      'desc': description,
                      'pk_obj': pk_doc_obj,
                      'pk_pat': pk_identity,
                      'fname': filename
              }
              cmd = """
                      INSERT INTO clin.export_item (
                              description,
                              fk_doc_obj,
                              fk_identity,
                              data,
                              filename
                      ) VALUES (
                              gm.nullify_empty_string(%(desc)s),
                              %(pk_obj)s,
                              %(pk_pat)s,
                              (CASE
                                      WHEN %(pk_obj)s IS NULL THEN %(fname)s::bytea
                                      ELSE NULL::bytea
                              END),
                              (CASE
                                      WHEN %(pk_obj)s IS NULL THEN gm.nullify_empty_string(%(fname)s)
                                      ELSE NULL
                              END)
                      )
                      RETURNING pk
              """
              rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}], return_data = True, get_col_idx = False)
              return cExportItem(aPK_obj = rows[0]['pk'])

`def delete_export_item(pk_export_item=None)`
  Expand source code

      def delete_export_item(pk_export_item=None):
              args = {'pk': pk_export_item}
              cmd = "DELETE FROM clin.export_item WHERE pk = %(pk)s"
              gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
              return True

`def get_export_items(order_by=None, pk_identity=None, designation=None, return_pks=False)`
  Expand source code

      def get_export_items(order_by=None, pk_identity=None, designation=None, return_pks=False):

              args = {
                      'pat': pk_identity,
                      'desig': gmTools.coalesce(designation, PRINT_JOB_DESIGNATION)
              }
              where_parts = []
              if pk_identity is not None:
                      where_parts.append('pk_identity = %(pat)s')
                      # note that invalidly linked items will be
                      # auto-healed when instantiated
              if designation is None:
                      where_parts.append("designation IS DISTINCT FROM %(desig)s")
              else:
                      where_parts.append('designation = %(desig)s')
              if order_by is None:
                      order_by = 'pk_identity, list_position'
              order_by = ' ORDER BY %s' % order_by
              cmd = (_SQL_get_export_items % ' AND '.join(where_parts)) + order_by
              rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)
              if return_pks:
                      return [ r['pk_export_item'] for r in rows ]

              return [ cExportItem(row = {'data': r, 'idx': idx, 'pk_field': 'pk_export_item'}) for r in rows ]

`def get_print_jobs(order_by=None, pk_identity=None)`
  Expand source code

      def get_print_jobs(order_by=None, pk_identity=None):
              return get_export_items(order_by = order_by, pk_identity = pk_identity, designation = PRINT_JOB_DESIGNATION)

`def save_file_passphrases_into_files() ‑> list`
  Expand source code

      def save_file_passphrases_into_files() -> list[str]: # | None:
              try:
                      hash_val = input('Please enter the file hash: ')
              except KeyboardInterrupt:
                      return None

              return save_object_passphrase_to_file(hash_val)

`def save_object_passphrase_to_file(hash: str = None) ‑> list`

  Save encrypted passphrases known for a hash into files.

  ## Args

  `hash`
    the hash to look up passphrases for

  Returns List of files containing encrypted passphrases, or None.

  Expand source code

      def save_object_passphrase_to_file(hash:str=None) -> list[str]:
              """Save encrypted passphrases known for a hash into files.

              Args:
                      hash: the hash to look up passphrases for

              Returns
                      List of files containing encrypted passphrases, or None.
              """
              SQL = 'SELECT * FROM gm.obj_export_passphrase WHERE hash = %(hash)s'
              args = {'hash': hash}
              rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': SQL, 'args': args}])
              if not rows:
                      return None

              phrase_files = []
              for row in rows:
                      phrasefile_name = '%s-%s-passphrase.txt.asc' % (row['hash'], row['hash_type'])
                      with open(phrasefile_name, mode = 'wt', encoding = 'utf8') as phrasefile:
                              phrasefile.write('%s: %s\n' % (row['hash_type'], row['hash']))
                              if row['description']:
                                      phrasefile.write('%s' % row['description'])
                                      phrasefile.write('\n')
                              phrasefile.write('\n')
                              phrasefile.write(row['phrase'])
                      phrase_files.append(phrasefile_name)
              return phrase_files

`def store_object_passphrase(obj=None, passphrase: str = None, hash_type: str = 'md5', owner=None, comment: dict = None) ‑> bool`

  Store in the database the (encrypted) passphrase for an object.

  The passphrase is stored encrypted with the public key of the owner as well as with any public key configured as a passphrase trustee.

  ## Args

  `obj`
    an instance supporting the (binary) read protocol
  `passphrase`
    the passphrase to store
  `hash_type`
    the hash to use, defaults to 'md5'
  `owner`
    staff member to encrypt passphrase to (by public key), defaults to current provider
  `comment`
    a structured comment on the object

  ## Returns

  True/False based on success

  Expand source code

      def store_object_passphrase(obj=None, passphrase:str=None, hash_type:str='md5', owner=None, comment:dict=None) -> bool:
              """Store in the database the (encrypted) passphrase for an object.

              The passphrase is stored encrypted with the public key of
              the owner as well as with any public key configured as a
              passphrase trustee.

              Args:
                      obj: an instance supporting the (binary) read protocol
                      passphrase: the passphrase to store
                      hash_type: the hash to use, defaults to 'md5'
                      owner: staff member to encrypt passphrase to (by public key), defaults to current provider
                      comment: a structured comment on the object

              Returns:
                      True/False based on success
              """
              assert obj, '<obj> must not be None'
              assert passphrase, '<passphrase> must not be None'

              if hash_type not in hashlib.algorithms_available:
                      _log.error('hash type [%s] not available amongst %s', hash_type, hashlib.algorithms_available)
                      return False

              pubkey_files = []
              if owner is None:
                      owner = gmStaff.gmCurrentProvider()
              owner_key_file = owner.public_key_file
              if owner_key_file:
                      pubkey_files.append(owner_key_file)
              else:
                      _log.warning('no public key for owner [%s]', owner)
              trustee_key_files = gmStaff.get_public_keys_of_passphrase_trustees(as_files = True)
              if trustee_key_files:
                      pubkey_files.extend(trustee_key_files)
              else:
                      _log.warning('there are no trustee public keys configured for passphrase escrow')
              if not pubkey_files:
                      _log.error('cannot escrow passphrase, neither owner nor trustee public keys available')
                      return False

              hashor = hashlib.new(hash_type, usedforsecurity = False)
              chunk_size = 5 * 1024 * 1024
              data = obj.read(chunk_size)
              while data:
                      hashor.update(data)
                      data = obj.read(chunk_size)
              hash_val = hashor.hexdigest()
              encrypted_phrase = gmCrypto.encrypt_data_with_gpg (
                      data = passphrase,
                      recipient_key_files = pubkey_files,
                      comment = '[%s]::%s' % (hash_type, hash_val),
                      verbose = _cfg.get(option = 'debug')
              )
              SQL = """INSERT INTO gm.obj_export_passphrase (
                      hash_type, hash, phrase, description
              ) VALUES (
                      %(hash_type)s,
                      %(hash)s,
                      %(phrase)s,
                      %(desc)s
              )"""
              args = {
                      'hash_type': hash_type,
                      'hash': hash_val,
                      'phrase': encrypted_phrase,
                      'desc': comment
              }
              gmPG2.run_rw_queries(queries = [{'cmd': SQL, 'args': args}])
              return True

`def store_passphrase_of_file(filename: str = None, passphrase: str = None, hash_type: str = 'md5', comment: dict = None) ‑> bool`

  Call store_object_passphrase on a given file.

  Expand source code

      def store_passphrase_of_file(filename:str=None, passphrase:str=None, hash_type:str='md5', comment:dict=None) -> bool:
              """Call store_object_passphrase on a given file."""
              try:
                      f = open(filename, 'rb')
              except Exception:
                      _log.exception('cannot open [%s]', filename)
                      return False

              if comment is None:
                      comment = {}
              comment['__filename__'] = filename
              return store_object_passphrase (
                      obj = f,
                      passphrase = passphrase,
                      hash_type = hash_type,
                      comment = comment
              )

`def store_passphrase_of_file_callback(filename: str = None, passphrase: str = None, comment: dict = None)`
  Expand source code

      def store_passphrase_of_file_callback(filename:str=None, passphrase:str=None, comment:dict=None):
              return store_passphrase_of_file (
                      filename = filename,
                      passphrase = passphrase,
                      hash_type = 'sha256',
                      comment = comment
              )

## Classes

`class cExportArea (pk_identity)`
  Expand source code

      class cExportArea(object):

              def __init__(self, pk_identity):
                      self.__pk_identity = pk_identity

              #--------------------------------------------------------
              def add_form(self, form=None, designation=None):

                      if len(form.final_output_filenames) == 0:
                              return True

                      items = []
                      for fname in form.final_output_filenames:
                              item = self.add_file(filename = fname)
                              if item is None:
                                      for prev_item in items:
                                              delete_export_item(pk_export_item = prev_item['pk_export_item'])
                                      return False
                              items.append(item)
                              item['description'] = _('form: %s %s (%s)') % (form.template['name_long'], form.template['external_version'], fname)
                              item['designation'] = designation
                              item.save()

                      return True

              #--------------------------------------------------------
              def add_forms(self, forms=None, designation=None):
                      all_ok = True
                      for form in forms:
                              all_ok = all_ok and self.add_form(form = form, designation = designation)

                      return all_ok

              #--------------------------------------------------------
              def add_path(self, path, comment=None):
                      """Add a DIR entry to the export area.

                      This sort of entry points to a certain directory on a
                      certain machine. The content of the the directory
                      will be included in exports, the directory *itself*
                      will not. For *that*, use a disposable top-level
                      directory into which you put the directory to include
                      as a subdirectory.
                      """
                      assert (os.path.isdir(path)), '<path> must exist: %s' % path

                      path_item_data = 'DIR::%s::%s/' % (platform.node(), path.rstrip('/'))
                      _log.debug('attempting to add path item [%s]', path_item_data)
                      item = self.path_item_exists(path_item_data)
                      if item is not None:
                              _log.debug('[%s] already in export area', path)
                              return item

                      if comment is None:
                              comment = _('path [%s/] on computer "%s"') % (
                                      path.rstrip('/'),
                                      platform.node()
                              )
                      else:
                              comment += _(' (on "%s")') % platform.node()

                      item = create_export_item (
                              description = comment,
                              pk_identity = self.__pk_identity,
                              filename = path_item_data
                      )
                      try:
                              README = open(os.path.join(path, DIRENTRY_README_NAME), mode = 'wt', encoding = 'utf8')
                              README.write('GNUmed DIRENTRY information\n')
                              README.write('created: %s\n' % gmDateTime.pydt_now_here())
                              README.write('machine: %s\n' % platform.node())
                              README.write('path: %s\n' % path)
                              README.close()
                      except OSError:
                              _log.exception('READONLY DIRENTRY [%s]', path)

                      return item

              #--------------------------------------------------------
              def path_item_exists(self, path_item_data):

                      assert (path_item_data.startswith('DIR::')), 'invalid <path_item_data> [%s]' % path_item_data

                      where_parts = [
                              'pk_identity = %(pat)s',
                              'filename = %(fname)s',
                              'pk_doc_obj IS NULL'
                      ]
                      args = {
                              'pat': self.__pk_identity,
                              'fname': path_item_data
                      }
                      SQL = _SQL_get_export_items % ' AND '.join(where_parts)
                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': SQL, 'args': args}], get_col_idx = True)
                      if len(rows) == 0:
                              return None

                      r = rows[0]
                      return cExportItem(row = {'data': r, 'idx': idx, 'pk_field': 'pk_export_item'})

              #--------------------------------------------------------
              def add_file(self, filename=None, hint=None):
                      try:
                              open(filename).close()
                      except Exception:
                              _log.exception('cannot open file <%s>', filename)
                              return None

                      file_md5 = gmTools.file2md5(filename = filename, return_hex = True)
                      existing_item = self.md5_exists(md5 = file_md5, include_document_parts = False)
                      if existing_item is not None:
                              _log.debug('md5 match (%s): %s already in export area', file_md5, filename)
                              return existing_item

                      path, basename = os.path.split(filename)
                      item = create_export_item (
                              description = '%s: %s (%s/)' % (
                                      gmTools.coalesce(hint, _('file'), '%s'),
                                      basename,
                                      path
                              ),
                              pk_identity = self.__pk_identity,
                              filename = filename
                      )

                      if item.update_data_from_file(filename = filename):
                              return item

                      # failed to insert data, hence remove export item entry
                      delete_export_item(pk_export_item = item['pk_export_item'])
                      return None

              #--------------------------------------------------------
              def add_files(self, filenames=None, hint=None):
                      all_ok = True
                      for fname in filenames:
                              all_ok = all_ok and (self.add_file(filename = fname, hint = hint) is not None)

                      return all_ok

              #--------------------------------------------------------
              def add_documents(self, documents=None):
                      for doc in documents:
                              doc_tag = _('%s (%s)%s') % (
                                      doc['l10n_type'],
                                      gmDateTime.pydt_strftime(doc['clin_when'], '%Y %b %d'),
                                      gmTools.coalesce(doc['comment'], '', ' "%s"')
                              )
                              for obj in doc.parts:
                                      if self.document_part_item_exists(pk_part = obj['pk_obj']):
                                              continue
                                      f_ext = ''
                                      if obj['filename'] is not None:
                                              f_ext = os.path.splitext(obj['filename'])[1].strip('.').strip()
                                      if f_ext != '':
                                              f_ext = ' .' + f_ext.upper()
                                      obj_tag = _('part %s (%s%s)%s') % (
                                              obj['seq_idx'],
                                              gmTools.size2str(obj['size']),
                                              f_ext,
                                              gmTools.coalesce(obj['obj_comment'], '', ' "%s"')
                                      )
                                      create_export_item (
                                              description = '%s - %s' % (doc_tag, obj_tag),
                                              pk_doc_obj = obj['pk_obj']
                                      )

              #--------------------------------------------------------
              def document_part_item_exists(self, pk_part=None):
                      cmd = "SELECT EXISTS (SELECT 1 FROM clin.export_item WHERE fk_doc_obj = %(pk_obj)s)"
                      args = {'pk_obj': pk_part}
                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
                      return rows[0][0]

              #--------------------------------------------------------
              def md5_exists(self, md5=None, include_document_parts=False):
                      where_parts = [
                              'pk_identity = %(pat)s',
                              'md5_sum = %(md5)s'
                      ]
                      args = {
                              'pat': self.__pk_identity,
                              'md5': md5
                      }

                      if not include_document_parts:
                              where_parts.append('pk_doc_obj IS NULL')

                      cmd = _SQL_get_export_items % ' AND '.join(where_parts)
                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)

                      if len(rows) == 0:
                              return None

                      r = rows[0]
                      return cExportItem(row = {'data': r, 'idx': idx, 'pk_field': 'pk_export_item'})

              #--------------------------------------------------------
              def remove_item(self, item):
                      if item.is_valid_DIRENTRY:
                              tag, node, local_fs_path = item['filename'].split('::', 2)
                              gmTools.remove_file(os.path.join(local_fs_path, DIRENTRY_README_NAME))
                      elif item.is_DIRENTRY:
                              return False

                      return delete_export_item(pk_export_item = item['pk_export_item'])

              #--------------------------------------------------------
              def dump_items_to_disk(self, base_dir:str=None, items:list=None, passphrase:str=None, convert2pdf:bool=False) -> str:
                      """Dump export area items to disk.

                      Args:
                              base_dir: directory into which to dump the items, defaults to a new sandbox directory
                              items: which items to dump, defaults to all items
                              passphrase: used to symmetrically encrypt dumped files, if set
                              convert2pdf: attempt to convert items into PDF before dumping them

                      Returns:
                              The base_dir into which items were dumped, or None.
                      """
                      if items is None:
                              items = self.items
                      if len(items) == 0:
                              return None

                      if base_dir is None:
                              base_dir = gmTools.mk_sandbox_dir()
                      else:
                              gmTools.mkdir(base_dir)
                      _log.debug('dumping export items to: %s', base_dir)
                      for item in items:
                              saved_fname = item.save_to_file(directory = base_dir, passphrase = passphrase, convert2pdf = convert2pdf)
                              if saved_fname is None:
                                      return None

                              if passphrase:
                                      store_passphrase_of_file(filename = saved_fname, passphrase = passphrase, hash_type = 'sha256')

                      return base_dir

              #--------------------------------------------------------
              def dump_items_to_disk_as_zip(self, base_dir:str=None, items:list=None, passphrase:str=None) -> str:
                      """Dump items to disk into a zip archive.

                              Calls dump_items_to_disk().

                      Args:
                              base_dir: directory into which to dump the items, defaults to a new sandbox directory
                              items: which items to dump, defaults to all items
                              passphrase: used to symmetrically encrypt dumped files, if set

                      Returns:
                              Zip archive name, or None.
                      """
                      _log.debug('target dir: %s', base_dir)
                      dump_dir = self.dump_items_to_disk(base_dir = base_dir, items = items)
                      if dump_dir is None:
                              _log.error('cannot dump export area items')
                              return None

                      if passphrase:
                              zip_file = gmCrypto.create_encrypted_zip_archive_from_dir (
                                      source_dir = dump_dir,
                                      comment = _('GNUmed Patient Media'),
                                      overwrite = True,
                                      passphrase = passphrase,
                                      verbose = _cfg.get(option = 'debug')
                              )
                              if zip_file:
                                      store_passphrase_of_file(filename = zip_file, passphrase = passphrase, hash_type = 'sha256')
                              else:
                                      _log.error('cannot zip+encrypt export area items dump')
                              return zip_file

                      zip_file = gmCrypto.create_zip_archive_from_dir (
                              dump_dir,
                              comment = _('GNUmed Patient Media'),
                              overwrite = True,
                              verbose = _cfg.get(option = 'debug')
                      )
                      if not zip_file:
                              _log.error('cannot zip export area items dump')
                      return zip_file

              #--------------------------------------------------------
              def export(self, base_dir=None, items=None, passphrase=None):
                      """Export items as structured patient media.

                      Args:
                              base_dir: directory into which to store the export, defaults to a new sandbox directory based on patient name
                              items: which items to dump, defaults to all items
                              passphrase: used to symmetrically encrypt dumped files, if set

                      Returns:
                              Base_dir name, else None or False on failure.
                      """
                      if items is None:
                              items = self.items
                      if len(items) == 0:
                              return None

                      from Gnumed.business.gmPerson import cPatient
                      pat = cPatient(aPK_obj = self.__pk_identity)
                      target_base_dir = base_dir
                      if target_base_dir is None:
                              target_base_dir = gmTools.mk_sandbox_dir(prefix = '%s-' % pat.subdir_name)
                      gmTools.mkdir(target_base_dir)
                      _log.debug('patient media base dir: %s', target_base_dir)
                      if not gmTools.dir_is_empty(target_base_dir):
                              _log.error('patient media base dir is not empty')
                              return False

                      from Gnumed.business.gmPraxis import gmCurrentPraxisBranch
                      prax = gmCurrentPraxisBranch()

                      html_data = {}

                      # 1) assemble everything in a sandbox
                      # - setup sandbox
                      sandbox_dir = gmTools.mk_sandbox_dir()
                      _log.debug('sandbox dir: %s', sandbox_dir)
                      doc_dir = os.path.join(sandbox_dir, DOCUMENTS_SUBDIR)
                      gmTools.mkdir(doc_dir)
                      # - export mugshot
                      mugshot = pat.document_folder.latest_mugshot
                      if mugshot is not None:
                              mugshot_fname = mugshot.save_to_file(directory = doc_dir)
                              fname = os.path.split(mugshot_fname)[1]
                              html_data['mugshot_url'] = os.path.join(DOCUMENTS_SUBDIR, fname)
                              html_data['mugshot_alt'] =_('patient photograph from %s') % gmDateTime.pydt_strftime(mugshot['date_generated'], '%B %Y')
                              html_data['mugshot_title'] = gmDateTime.pydt_strftime(mugshot['date_generated'], '%B %Y')
                      # - export patient demographics as GDT/XML/VCF/MCF
                      pat.export_as_gdt(filename = os.path.join(sandbox_dir, 'patient.gdt'))
                      pat.export_as_xml_linuxmednews(filename = os.path.join(sandbox_dir, 'patient.xml'))
                      pat.export_as_vcard(filename = os.path.join(sandbox_dir, 'patient.vcf'))
                      pat.export_as_mecard(filename = os.path.join(sandbox_dir, u'patient.mcf'))
                      # - create CD.INF
                      self._create_cd_inf(pat, sandbox_dir)
                      # - export items
                      docs_list = []
                      for item in items:
                              # if it is a dicomdir - put it into the root of the target media
                              if item.is_DICOM_directory:
                                      _log.debug('exporting DICOMDIR DIRENTRY')
                                      # save into base dir
                                      item_fname = item.save_to_file(directory = sandbox_dir)
                                      # do not include into ./documents/ listing
                                      continue
                              if item.is_valid_DIRENTRY:
                                      _log.debug('exporting DIRENTRY')
                                      # if there are files in the root dir: put it into a
                                      # subdir of ./documents/ where subdir is the leaf
                                      # of the item .filename
                                      if item.has_files_in_root:
                                              tag, node, local_fs_path = item['filename'].split('::', 2)
                                              subdir = local_fs_path.rstrip('/').split('/')[-1]
                                              subdir = os.path.join(doc_dir, subdir)
                                              gmTools.mkdir(subdir)
                                              item_fname = item.save_to_file(directory = subdir)
                                      # if it is subdirs only - put it into documents/ directly
                                      else:
                                              item_fname = item.save_to_file(directory = doc_dir)
                                      # include into ./documents/ listing
                                      fname = os.path.split(item_fname)[1]
                                      docs_list.append([fname, gmTools.html_escape_string(item['description'])])
                                      continue
                              if item.is_DIRENTRY:
                                      # DIRENTRY but not valid: skip
                                      continue
                              # normal entry, doc obj links or data item
                              item_fname = item.save_to_file(directory = doc_dir)
                              fname = os.path.split(item_fname)[1]
                              # collect items so we can later correlate items and descriptions
                              # actually we should link to encrypted items, and to unencrypted ones
                              docs_list.append([fname, gmTools.html_escape_string(item['description'])])
                      # - link to DICOMDIR if exists
                      if 'DICOMDIR' in os.listdir(sandbox_dir):       # in root path
                              has_dicomdir = True
                              html_data['browse_dicomdir'] = '<li><a href="./DICOMDIR">%s</a></li>' % _('show DICOMDIR file')
                      else:
                              has_dicomdir = False
                      # - include DWV link if there is a DICOMDIR
                      if has_dicomdir:
                              # do not clone into media base to avoid encryption,
                              # DWV will be cloned to there later on
                              dwv_sandbox_dir = self._clone_dwv()
                              if dwv_sandbox_dir is not None:
                                      html_data['run_dicom_viewer'] = '<li><a href="./dwv/viewers/mobile-local/index.html">%s</a></li>' % _('run Radiology Images (DICOM) Viewer')
                      # - create frontpage.html
                      frontpage_fname = self._create_frontpage_html(pat, prax, sandbox_dir, html_data, docs_list)
                      # - start.html (just a convenience copy of frontpage.html)
                      #   (later overwritten, if encryption is requested)
                      start_fname = os.path.join(sandbox_dir, 'start.html')
                      try:
                              shutil.copy2(frontpage_fname, start_fname)
                      except Exception:
                              _log.exception('cannot copy %s to %s', frontpage_fname, start_fname)
                      # - index.html (just a convenience copy of frontpage.html)
                      #   (later overwritten if encryption is requested)
                      index_fname = os.path.join(sandbox_dir, 'index.html')
                      try:
                              shutil.copy2(frontpage_fname, index_fname)
                      except Exception:
                              _log.exception('cannot copy %s to %s', frontpage_fname, index_fname)

                      # 2) encrypt content of sandbox
                      if passphrase is not None:
                              encrypted = gmCrypto.encrypt_directory_content (
                                      directory = sandbox_dir,
                                      receiver_key_ids = None,
                                      passphrase = passphrase,
                                      comment = None,
                                      verbose = _cfg.get(option = 'debug'),
                                      remove_unencrypted = True,
                                      store_passphrase_cb = store_passphrase_of_file_callback
                              )
                              if not encrypted:
                                      _log.errror('cannot encrypt data in sandbox dir')
                                      return False

                      # 3) add never-to-be-encrypted data
                      # - AUTORUN.INF
                      # - README
                      if passphrase:
                              self._create_autorun_inf(None, sandbox_dir)
                              self._create_readme(None, sandbox_dir)
                      else:
                              self._create_autorun_inf(pat, sandbox_dir)
                              self._create_readme(pat, sandbox_dir)
                      # - praxis VCF/MCF
                      shutil.move(prax.vcf, os.path.join(sandbox_dir, 'praxis.vcf'))
                      prax.export_as_mecard(filename = os.path.join(sandbox_dir, u'praxis.mcf'))
                      # - include DWV code
                      if has_dicomdir:
                              self._clone_dwv(target_dir = sandbox_dir)
                      # - index.html as boilerplate for decryption
                      if passphrase:
                              index_fname = self._create_index_html(prax, sandbox_dir, html_data)

                      # 4) move sandbox to target dir
                      target_dir = gmTools.copy_tree_content(sandbox_dir, target_base_dir)
                      if target_dir is None:
                              _log.error('cannot fill target base dir')
                              return False

                      return target_dir

              #--------------------------------------------------------
              def export_as_zip(self, base_dir=None, items=None, passphrase=None):
                      _log.debug('target dir: %s', base_dir)
                      export_dir = self.export(base_dir = base_dir, items = items)
                      if export_dir is None:
                              _log.debug('cannot export items')
                              return None

                      if passphrase:
                              zip_file = gmCrypto.create_encrypted_zip_archive_from_dir (
                                      export_dir,
                                      comment = _('GNUmed Patient Media'),
                                      overwrite = True,
                                      passphrase = passphrase,
                                      verbose = _cfg.get(option = 'debug')
                              )
                              if zip_file:
                                      store_passphrase_of_file(filename = zip_file, passphrase = passphrase, hash_type = 'sha256')
                              else:
                                      _log.debug('cannot create zip archive')
                              return zip_file

                      zip_file = gmCrypto.create_zip_archive_from_dir (
                              export_dir,
                              comment = _('GNUmed Patient Media'),
                              overwrite = True,
                              verbose = _cfg.get(option = 'debug')
                      )
                      if not zip_file:
                              _log.debug('cannot create zip archive')
                      return zip_file

              #--------------------------------------------------------
              def _create_index_html(self, praxis, directory, data):
                      # header part
                      _HTML_data = {
                              'html_title_header': _('Patient data'),
                              'title': _('Patient data excerpt'),
                              'docs_title': _('Documents'),
                              'browse_root': _('browse storage medium'),
                              'browse_docs': _('browse documents area'),
                              'doc_subdir': DOCUMENTS_SUBDIR,
                              'date' : gmTools.html_escape_string(gmDateTime.pydt_strftime(gmDateTime.pydt_now_here(), format = '%Y %B %d'))
                      }
                      frontpage_fname_enc = 'frontpage.html.asc'
                      if os.path.isfile(os.path.join(directory, frontpage_fname_enc)):
                              _HTML_data['frontpage_fname'] = frontpage_fname_enc
                      frontpage_fname_enc = 'frontpage.html.7z'
                      if os.path.isfile(os.path.join(directory, frontpage_fname_enc)):
                              _HTML_data['frontpage_fname'] = frontpage_fname_enc
                      # footer part
                      lines = []
                      adr = praxis.branch.org_unit.address
                      if adr is not None:
                              lines.extend(adr.format())
                      for comm in praxis.branch.org_unit.comm_channels:
                              if comm['is_confidential'] is True:
                                      continue
                              lines.append('%s: %s' % (
                                      comm['l10n_comm_type'],
                                      comm['url']
                              ))
                      adr = ''
                      if len(lines) > 0:
                              adr = gmTools.html_escape_string('\n'.join(lines), replace_eol = True, keep_visual_eol = True)
                      _HTML_data['branch'] = gmTools.html_escape_string(praxis['branch'])
                      _HTML_data['praxis'] = gmTools.html_escape_string(praxis['praxis'])
                      _HTML_data['gm_ver'] = gmTools.html_escape_string(gmTools.coalesce(_cfg.get(option = 'client_version'), 'git HEAD'))
                      _HTML_data['adr'] = adr
                      # create file
                      index_fname = os.path.join(directory, 'index.html')
                      index_file = open(index_fname, mode = 'wt', encoding = 'utf8')
                      index_file.write(_INDEX_HTML_CONTENT % _HTML_data)
                      index_file.close()
                      return index_fname

              #--------------------------------------------------------
              def _create_frontpage_html(self, patient, praxis, directory, data, docs_list):
                      # <li><a href="documents/filename-1.ext">document 1 description</a></li>
                      _HTML_LIST_ITEM = '     <li><a href="%s">%s</a></li>'
                      # header part
                      _HTML_data = {
                              'html_title_header': _('Patient data for'),
                              'html_title_patient': gmTools.html_escape_string(patient.get_description_gender(with_nickname = False) + ', ' + _('born') + ' ' + patient.get_formatted_dob('%Y %B %d')),
                              'title': _('Patient data excerpt'),
                              'pat_name': gmTools.html_escape_string(patient.get_description_gender(with_nickname = False)),
                              'pat_dob': gmTools.html_escape_string(_('born') + ' ' + patient.get_formatted_dob('%Y %B %d')),
                              'mugshot_url': 'documents/no-such-file.png',
                              'mugshot_alt': _('no patient photograph available'),
                              'mugshot_title': '',
                              'docs_title': _('Documents'),
                              'browse_root': _('browse storage medium'),
                              'browse_docs': _('browse documents area'),
                              'doc_subdir': DOCUMENTS_SUBDIR,
                              'browse_dicomdir': '',
                              'run_dicom_viewer': '',
                              'date' : gmTools.html_escape_string(gmDateTime.pydt_strftime(gmDateTime.pydt_now_here(), format = '%Y %B %d'))
                      }
                      for key in data:
                              _HTML_data[key] = data[key]

                      # documents part
                      _HTML_docs_list = []
                      for doc in docs_list:
                              subdir = os.path.join(directory, DOCUMENTS_SUBDIR, doc[0])
                              if os.path.isdir(subdir):
                                      _HTML_docs_list.append(_HTML_LIST_ITEM % (os.path.join(DOCUMENTS_SUBDIR, doc[0]), _('DIRECTORY: %s/%s/') % (DOCUMENTS_SUBDIR, doc[0])))
                                      _HTML_docs_list.append('        <ul>')
                                      for fname in os.listdir(subdir):
                                              tmp = os.path.join(subdir, fname)
                                              if os.path.isdir(tmp):
                                                      _HTML_docs_list.append('                <li><a href="%s">%s</a></li>' % (os.path.join(DOCUMENTS_SUBDIR, doc[0], fname), _('DIRECTORY: %s/%s/%s/') % (DOCUMENTS_SUBDIR, doc[0], fname)))
                                              else:
                                                      _HTML_docs_list.append('                <li><a href="%s">%s</a></li>' % (os.path.join(DOCUMENTS_SUBDIR, doc[0], fname), fname))
                                      _HTML_docs_list.append('        </ul>')
                              else:
                                      _HTML_docs_list.append(_HTML_LIST_ITEM % (os.path.join(DOCUMENTS_SUBDIR, doc[0]), doc[1]))
                      _HTML_data['docs_list'] = u'\n  '.join(_HTML_docs_list)

                      # footer part
                      lines = []
                      adr = praxis.branch.org_unit.address
                      if adr is not None:
                              lines.extend(adr.format())
                      for comm in praxis.branch.org_unit.comm_channels:
                              if comm['is_confidential'] is True:
                                      continue
                              lines.append('%s: %s' % (
                                      comm['l10n_comm_type'],
                                      comm['url']
                              ))
                      adr = ''
                      if len(lines) > 0:
                              adr = gmTools.html_escape_string('\n'.join(lines), replace_eol = True, keep_visual_eol = True)
                      _HTML_data['branch'] = gmTools.html_escape_string(praxis['branch'])
                      _HTML_data['praxis'] = gmTools.html_escape_string(praxis['praxis'])
                      _HTML_data['gm_ver'] = gmTools.html_escape_string(gmTools.coalesce(_cfg.get(option = 'client_version'), 'git HEAD'))
                      _HTML_data['adr'] = adr
                      # create file
                      frontpage_fname = os.path.join(directory, 'frontpage.html')
                      frontpage_file = open(frontpage_fname, mode = 'wt', encoding = 'utf8')
                      frontpage_file.write(_FRONTPAGE_HTML_CONTENT % _HTML_data)
                      frontpage_file.close()
                      return frontpage_fname

              #--------------------------------------------------------
              def _clone_dwv(self, target_dir=None):
                      _log.debug('cloning dwv')
                      # find DWV
                      dwv_src_dir = os.path.join(gmTools.gmPaths().local_base_dir, 'resources', 'dwv4export')
                      if not os.path.isdir(dwv_src_dir):
                              _log.debug('[%s] not found', dwv_src_dir)
                              dwv_src_dir = os.path.join(gmTools.gmPaths().system_app_data_dir, 'resources', 'dwv4export')
                      if not os.path.isdir(dwv_src_dir):
                              _log.debug('[%s] not found', dwv_src_dir)
                              return None
                      # clone it
                      if target_dir is None:
                              target_dir = gmTools.mk_sandbox_dir()
                      dwv_target_dir = os.path.join(target_dir, 'dwv')
                      gmTools.rmdir(dwv_target_dir)
                      try:
                              shutil.copytree(dwv_src_dir, dwv_target_dir)
                      except (shutil.Error, OSError):
                              _log.exception('cannot include DWV, skipping')
                              return None

                      return dwv_target_dir

              #--------------------------------------------------------
              def _create_readme(self, patient, directory):
                      _README_CONTENT = (
                              'This is a patient data excerpt created by the GNUmed Electronic Medical Record.\n'
                              '\n'
                              'Patient: %s\n'
                              '\n'
                              'Please display <frontpage.html> to browse patient data.\n'
                              '\n'
                              'Individual documents are stored in the subdirectory\n'
                              '\n'
                              '       documents/\n'
                              '\n'
                              '\n'
                              'Data may need to be decrypted with either GNU Privacy\n'
                              'Guard or 7zip/WinZip.\n'
                              '\n'
                              '.asc:\n'
                              '       https://gnupg.org\n'
                              '\n'
                              '.7z:\n'
                              '       https://www.7-zip.org\n'
                              '       https://www.winzip.com\n'
                              '\n'
                              'To obtain any needed keys you will have to get in touch with\n'
                              'the creator or the owner of this patient media excerpt.\n'
                      )
                      readme_fname = os.path.join(directory, 'README')
                      readme_file = open(readme_fname, mode = 'wt', encoding = 'utf8')
                      if patient is None:
                              pat_str = _('<protected>')
                      else:
                              pat_str = patient.get_description_gender(with_nickname = False) + ', ' + _('born') + ' ' + patient.get_formatted_dob('%Y %B %d')
                      readme_file.write(_README_CONTENT % pat_str)
                      readme_file.close()
                      return readme_fname

              #--------------------------------------------------------
              def _create_cd_inf(self, patient, directory):
                      _CD_INF_CONTENT = (
                              '[Patient Info]\r\n'                                    # needs \r\n for Windows
                              'PatientName=%s, %s\r\n'
                              'Gender=%s\r\n'
                              'BirthDate=%s\r\n'
                              'CreationDate=%s\r\n'
                              'PID=%s\r\n'
                              'EMR=GNUmed\r\n'
                              'Version=%s\r\n'
                              '#StudyDate=\r\n'
                              '#VNRInfo=<body part>\r\n'
                              '\r\n'
                              '# name format: lastnames, firstnames\r\n'
                              '# date format: YYYY-MM-DD (ISO 8601)\r\n'
                              '# gender format: %s\r\n'
                      )
                      fname = os.path.join(directory, 'CD.INF')
                      cd_inf = open(fname, mode = 'wt', encoding = 'utf8')
                      cd_inf.write(_CD_INF_CONTENT % (
                              patient['lastnames'],
                              patient['firstnames'],
                              gmTools.coalesce(patient['gender'], '?'),
                              patient.get_formatted_dob('%Y-%m-%d'),
                              gmDateTime.pydt_strftime(gmDateTime.pydt_now_here(), format = '%Y-%m-%d'),
                              patient.ID,
                              _cfg.get(option = 'client_version'),
                              ' / '.join([ '%s = %s (%s)' % (g['tag'], g['label'], g['l10n_label']) for g in patient.gender_list ])
                      ))
                      cd_inf.close()
                      return fname

              #--------------------------------------------------------
              def _create_autorun_inf(self, patient, directory):
                      _AUTORUN_INF_CONTENT = (                                                        # needs \r\n for Windows
                              '[AutoRun.Amd64]\r\n'                                   # 64 bit
                              'label=%(label)s\r\n'                                   # patient name/DOB
                              'shellexecute=index.html\r\n'
                              'action=%(action)s\r\n'                                 # % _('Browse patient data')
                              '%(icon)s\r\n'                                                  # "icon=gnumed.ico" or ""
                              'UseAutoPlay=1\r\n'
                              '\r\n'
                              '[AutoRun]\r\n'                                                 # 32 bit
                              'label=%(label)s\r\n'                                   # patient name/DOB
                              'shellexecute=index.html\r\n'
                              'action=%(action)s\r\n'                                 # % _('Browse patient data')
                              '%(icon)s\r\n'                                                  # "icon=gnumed.ico" or ""
                              'UseAutoPlay=1\r\n'
                              '\r\n'
                              '[Content]\r\n'
                              'PictureFiles=yes\r\n'
                              'VideoFiles=yes\r\n'
                              'MusicFiles=no\r\n'
                              '\r\n'
                              '[IgnoreContentPaths]\r\n'
                              '\documents\r\n'
                              '\r\n'
                              '[unused]\r\n'
                              'open=requires explicit executable\r\n'
                      )
                      autorun_dict = {
                              'label': self._compute_autorun_inf_label(patient),
                              'action': _('Browse patient data'),
                              'icon': ''
                      }
                      media_icon_kwd = '$$gnumed_patient_media_export_icon'
                      media_icon_kwd_exp = gmKeywordExpansion.get_expansion (
                              keyword = media_icon_kwd,
                              textual_only = False,
                              binary_only = True
                      )
                      icon_tmp_fname = media_icon_kwd_exp.save_to_file (
                              target_mime = 'image/x-icon',
                              target_extension = '.ico',
                              ignore_conversion_problems = True
                      )
                      if icon_tmp_fname is None:
                              _log.error('cannot retrieve <%s>', media_icon_kwd)
                      else:
                              media_icon_fname = os.path.join(directory, 'gnumed.ico')
                              try:
                                      shutil.copy2(icon_tmp_fname, media_icon_fname)
                                      autorun_dict['icon'] = 'icon=gnumed.ico'
                              except Exception:
                                      _log.exception('cannot move %s to %s', icon_tmp_fname, media_icon_fname)
                      autorun_fname = os.path.join(directory, 'AUTORUN.INF')
                      autorun_file = open(autorun_fname, mode = 'wt', encoding = 'cp1252', errors = 'replace')
                      autorun_file.write(_AUTORUN_INF_CONTENT % autorun_dict)
                      autorun_file.close()
                      return autorun_fname

              #--------------------------------------------------------
              def _compute_autorun_inf_label(self, patient):
                      if patient is None:
                              # if no patient provided - assume the target media
                              # is to be encrypted and thusly do not expose patient data,
                              # AUTORUN.INF itself will not be encrypted because
                              # Windows must be able to parse it
                              return _('GNUmed patient data excerpt')[:32]

                      LABEL_MAX_LEN = 32
                      dob = patient.get_formatted_dob(format = ' %Y%m%d', none_string = '', honor_estimation = False)
                      if dob == '':
                              gender_template = ' (%s)'
                      else:
                              gender_template = ' %s'
                      gender = gmTools.coalesce(patient['gender'], '', gender_template)
                      name_max_len = LABEL_MAX_LEN - len(gender) - len(dob)                   # they already include appropriate padding
                      name = patient.active_name
                      last = name['lastnames'].strip()
                      first = name['firstnames'].strip()
                      len_last = len(last)
                      len_first = len(first)
                      while (len_last + len_first + 1) > name_max_len:
                              if len_first > 6:
                                      len_first -= 1
                                      if first[len_first - 1] == ' ':
                                              len_first -= 1
                                      continue
                              len_last -= 1
                              if last[len_last - 1] == ' ':
                                      len_last -= 1
                      last = last[:len_last].strip().upper()
                      first = first[:len_first].strip()
                      # max 32 chars, supposedly ASCII, but CP1252 likely works pretty well
                      label = (('%s %s%s%s' % (last, first, dob,      gender)).strip())[:32]
                      return label

              #--------------------------------------------------------
              # properties
              #--------------------------------------------------------
              def get_items(self, designation=None, order_by='pk_identity, list_position, designation, description'):
                      return get_export_items(order_by = order_by, pk_identity = self.__pk_identity, designation = designation)

              items = property(get_items)

              #--------------------------------------------------------
              def get_printouts(self, order_by='list_position, designation, description'):
                      return get_print_jobs(order_by = order_by, pk_identity = self.__pk_identity)

              printouts = property(get_printouts)

  ### Instance variables

  `var items`
    Expand source code

        def get_items(self, designation=None, order_by='pk_identity, list_position, designation, description'):
                return get_export_items(order_by = order_by, pk_identity = self.__pk_identity, designation = designation)

  `var printouts`
    Expand source code

        def get_printouts(self, order_by='list_position, designation, description'):
                return get_print_jobs(order_by = order_by, pk_identity = self.__pk_identity)

  ### Methods

  `def add_documents(self, documents=None)`
    Expand source code

        def add_documents(self, documents=None):
                for doc in documents:
                        doc_tag = _('%s (%s)%s') % (
                                doc['l10n_type'],
                                gmDateTime.pydt_strftime(doc['clin_when'], '%Y %b %d'),
                                gmTools.coalesce(doc['comment'], '', ' "%s"')
                        )
                        for obj in doc.parts:
                                if self.document_part_item_exists(pk_part = obj['pk_obj']):
                                        continue
                                f_ext = ''
                                if obj['filename'] is not None:
                                        f_ext = os.path.splitext(obj['filename'])[1].strip('.').strip()
                                if f_ext != '':
                                        f_ext = ' .' + f_ext.upper()
                                obj_tag = _('part %s (%s%s)%s') % (
                                        obj['seq_idx'],
                                        gmTools.size2str(obj['size']),
                                        f_ext,
                                        gmTools.coalesce(obj['obj_comment'], '', ' "%s"')
                                )
                                create_export_item (
                                        description = '%s - %s' % (doc_tag, obj_tag),
                                        pk_doc_obj = obj['pk_obj']
                                )

  `def add_file(self, filename=None, hint=None)`
    Expand source code

        def add_file(self, filename=None, hint=None):
                try:
                        open(filename).close()
                except Exception:
                        _log.exception('cannot open file <%s>', filename)
                        return None

                file_md5 = gmTools.file2md5(filename = filename, return_hex = True)
                existing_item = self.md5_exists(md5 = file_md5, include_document_parts = False)
                if existing_item is not None:
                        _log.debug('md5 match (%s): %s already in export area', file_md5, filename)
                        return existing_item

                path, basename = os.path.split(filename)
                item = create_export_item (
                        description = '%s: %s (%s/)' % (
                                gmTools.coalesce(hint, _('file'), '%s'),
                                basename,
                                path
                        ),
                        pk_identity = self.__pk_identity,
                        filename = filename
                )

                if item.update_data_from_file(filename = filename):
                        return item

                # failed to insert data, hence remove export item entry
                delete_export_item(pk_export_item = item['pk_export_item'])
                return None

  `def add_files(self, filenames=None, hint=None)`
    Expand source code

        def add_files(self, filenames=None, hint=None):
                all_ok = True
                for fname in filenames:
                        all_ok = all_ok and (self.add_file(filename = fname, hint = hint) is not None)

                return all_ok

  `def add_form(self, form=None, designation=None)`
    Expand source code

        def add_form(self, form=None, designation=None):

                if len(form.final_output_filenames) == 0:
                        return True

                items = []
                for fname in form.final_output_filenames:
                        item = self.add_file(filename = fname)
                        if item is None:
                                for prev_item in items:
                                        delete_export_item(pk_export_item = prev_item['pk_export_item'])
                                return False
                        items.append(item)
                        item['description'] = _('form: %s %s (%s)') % (form.template['name_long'], form.template['external_version'], fname)
                        item['designation'] = designation
                        item.save()

                return True

  `def add_forms(self, forms=None, designation=None)`
    Expand source code

        def add_forms(self, forms=None, designation=None):
                all_ok = True
                for form in forms:
                        all_ok = all_ok and self.add_form(form = form, designation = designation)

                return all_ok

  `def add_path(self, path, comment=None)`

    Add a DIR entry to the export area.

    This sort of entry points to a certain directory on a certain machine. The content of the the directory will be included in exports, the directory itself will not. For that, use a disposable top-level directory into which you put the directory to include as a subdirectory.

    Expand source code

        def add_path(self, path, comment=None):
                """Add a DIR entry to the export area.

                This sort of entry points to a certain directory on a
                certain machine. The content of the the directory
                will be included in exports, the directory *itself*
                will not. For *that*, use a disposable top-level
                directory into which you put the directory to include
                as a subdirectory.
                """
                assert (os.path.isdir(path)), '<path> must exist: %s' % path

                path_item_data = 'DIR::%s::%s/' % (platform.node(), path.rstrip('/'))
                _log.debug('attempting to add path item [%s]', path_item_data)
                item = self.path_item_exists(path_item_data)
                if item is not None:
                        _log.debug('[%s] already in export area', path)
                        return item

                if comment is None:
                        comment = _('path [%s/] on computer "%s"') % (
                                path.rstrip('/'),
                                platform.node()
                        )
                else:
                        comment += _(' (on "%s")') % platform.node()

                item = create_export_item (
                        description = comment,
                        pk_identity = self.__pk_identity,
                        filename = path_item_data
                )
                try:
                        README = open(os.path.join(path, DIRENTRY_README_NAME), mode = 'wt', encoding = 'utf8')
                        README.write('GNUmed DIRENTRY information\n')
                        README.write('created: %s\n' % gmDateTime.pydt_now_here())
                        README.write('machine: %s\n' % platform.node())
                        README.write('path: %s\n' % path)
                        README.close()
                except OSError:
                        _log.exception('READONLY DIRENTRY [%s]', path)

                return item

  `def document_part_item_exists(self, pk_part=None)`
    Expand source code

        def document_part_item_exists(self, pk_part=None):
                cmd = "SELECT EXISTS (SELECT 1 FROM clin.export_item WHERE fk_doc_obj = %(pk_obj)s)"
                args = {'pk_obj': pk_part}
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
                return rows[0][0]

  `def dump_items_to_disk(self, base_dir: str = None, items: list = None, passphrase: str = None, convert2pdf: bool = False) ‑> str`

    Dump export area items to disk.

    ## Args

    `base_dir`
      directory into which to dump the items, defaults to a new sandbox directory
    `items`
      which items to dump, defaults to all items
    `passphrase`
      used to symmetrically encrypt dumped files, if set
    `convert2pdf`
      attempt to convert items into PDF before dumping them

    ## Returns

    The base_dir into which items were dumped, or None.

    Expand source code

        def dump_items_to_disk(self, base_dir:str=None, items:list=None, passphrase:str=None, convert2pdf:bool=False) -> str:
                """Dump export area items to disk.

                Args:
                        base_dir: directory into which to dump the items, defaults to a new sandbox directory
                        items: which items to dump, defaults to all items
                        passphrase: used to symmetrically encrypt dumped files, if set
                        convert2pdf: attempt to convert items into PDF before dumping them

                Returns:
                        The base_dir into which items were dumped, or None.
                """
                if items is None:
                        items = self.items
                if len(items) == 0:
                        return None

                if base_dir is None:
                        base_dir = gmTools.mk_sandbox_dir()
                else:
                        gmTools.mkdir(base_dir)
                _log.debug('dumping export items to: %s', base_dir)
                for item in items:
                        saved_fname = item.save_to_file(directory = base_dir, passphrase = passphrase, convert2pdf = convert2pdf)
                        if saved_fname is None:
                                return None

                        if passphrase:
                                store_passphrase_of_file(filename = saved_fname, passphrase = passphrase, hash_type = 'sha256')

                return base_dir

  `def dump_items_to_disk_as_zip(self, base_dir: str = None, items: list = None, passphrase: str = None) ‑> str`

    Dump items to disk into a zip archive.

            Calls dump_items_to_disk().

    ## Args

    `base_dir`
      directory into which to dump the items, defaults to a new sandbox directory
    `items`
      which items to dump, defaults to all items
    `passphrase`
      used to symmetrically encrypt dumped files, if set

    ## Returns

    Zip archive name, or None.

    Expand source code

        def dump_items_to_disk_as_zip(self, base_dir:str=None, items:list=None, passphrase:str=None) -> str:
                """Dump items to disk into a zip archive.

                        Calls dump_items_to_disk().

                Args:
                        base_dir: directory into which to dump the items, defaults to a new sandbox directory
                        items: which items to dump, defaults to all items
                        passphrase: used to symmetrically encrypt dumped files, if set

                Returns:
                        Zip archive name, or None.
                """
                _log.debug('target dir: %s', base_dir)
                dump_dir = self.dump_items_to_disk(base_dir = base_dir, items = items)
                if dump_dir is None:
                        _log.error('cannot dump export area items')
                        return None

                if passphrase:
                        zip_file = gmCrypto.create_encrypted_zip_archive_from_dir (
                                source_dir = dump_dir,
                                comment = _('GNUmed Patient Media'),
                                overwrite = True,
                                passphrase = passphrase,
                                verbose = _cfg.get(option = 'debug')
                        )
                        if zip_file:
                                store_passphrase_of_file(filename = zip_file, passphrase = passphrase, hash_type = 'sha256')
                        else:
                                _log.error('cannot zip+encrypt export area items dump')
                        return zip_file

                zip_file = gmCrypto.create_zip_archive_from_dir (
                        dump_dir,
                        comment = _('GNUmed Patient Media'),
                        overwrite = True,
                        verbose = _cfg.get(option = 'debug')
                )
                if not zip_file:
                        _log.error('cannot zip export area items dump')
                return zip_file

  `def export(self, base_dir=None, items=None, passphrase=None)`

    Export items as structured patient media.

    ## Args

    `base_dir`
      directory into which to store the export, defaults to a new sandbox directory based on patient name
    `items`
      which items to dump, defaults to all items
    `passphrase`
      used to symmetrically encrypt dumped files, if set

    ## Returns

    Base_dir name, else None or False on failure.

    Expand source code

        def export(self, base_dir=None, items=None, passphrase=None):
                """Export items as structured patient media.

                Args:
                        base_dir: directory into which to store the export, defaults to a new sandbox directory based on patient name
                        items: which items to dump, defaults to all items
                        passphrase: used to symmetrically encrypt dumped files, if set

                Returns:
                        Base_dir name, else None or False on failure.
                """
                if items is None:
                        items = self.items
                if len(items) == 0:
                        return None

                from Gnumed.business.gmPerson import cPatient
                pat = cPatient(aPK_obj = self.__pk_identity)
                target_base_dir = base_dir
                if target_base_dir is None:
                        target_base_dir = gmTools.mk_sandbox_dir(prefix = '%s-' % pat.subdir_name)
                gmTools.mkdir(target_base_dir)
                _log.debug('patient media base dir: %s', target_base_dir)
                if not gmTools.dir_is_empty(target_base_dir):
                        _log.error('patient media base dir is not empty')
                        return False

                from Gnumed.business.gmPraxis import gmCurrentPraxisBranch
                prax = gmCurrentPraxisBranch()

                html_data = {}

                # 1) assemble everything in a sandbox
                # - setup sandbox
                sandbox_dir = gmTools.mk_sandbox_dir()
                _log.debug('sandbox dir: %s', sandbox_dir)
                doc_dir = os.path.join(sandbox_dir, DOCUMENTS_SUBDIR)
                gmTools.mkdir(doc_dir)
                # - export mugshot
                mugshot = pat.document_folder.latest_mugshot
                if mugshot is not None:
                        mugshot_fname = mugshot.save_to_file(directory = doc_dir)
                        fname = os.path.split(mugshot_fname)[1]
                        html_data['mugshot_url'] = os.path.join(DOCUMENTS_SUBDIR, fname)
                        html_data['mugshot_alt'] =_('patient photograph from %s') % gmDateTime.pydt_strftime(mugshot['date_generated'], '%B %Y')
                        html_data['mugshot_title'] = gmDateTime.pydt_strftime(mugshot['date_generated'], '%B %Y')
                # - export patient demographics as GDT/XML/VCF/MCF
                pat.export_as_gdt(filename = os.path.join(sandbox_dir, 'patient.gdt'))
                pat.export_as_xml_linuxmednews(filename = os.path.join(sandbox_dir, 'patient.xml'))
                pat.export_as_vcard(filename = os.path.join(sandbox_dir, 'patient.vcf'))
                pat.export_as_mecard(filename = os.path.join(sandbox_dir, u'patient.mcf'))
                # - create CD.INF
                self._create_cd_inf(pat, sandbox_dir)
                # - export items
                docs_list = []
                for item in items:
                        # if it is a dicomdir - put it into the root of the target media
                        if item.is_DICOM_directory:
                                _log.debug('exporting DICOMDIR DIRENTRY')
                                # save into base dir
                                item_fname = item.save_to_file(directory = sandbox_dir)
                                # do not include into ./documents/ listing
                                continue
                        if item.is_valid_DIRENTRY:
                                _log.debug('exporting DIRENTRY')
                                # if there are files in the root dir: put it into a
                                # subdir of ./documents/ where subdir is the leaf
                                # of the item .filename
                                if item.has_files_in_root:
                                        tag, node, local_fs_path = item['filename'].split('::', 2)
                                        subdir = local_fs_path.rstrip('/').split('/')[-1]
                                        subdir = os.path.join(doc_dir, subdir)
                                        gmTools.mkdir(subdir)
                                        item_fname = item.save_to_file(directory = subdir)
                                # if it is subdirs only - put it into documents/ directly
                                else:
                                        item_fname = item.save_to_file(directory = doc_dir)
                                # include into ./documents/ listing
                                fname = os.path.split(item_fname)[1]
                                docs_list.append([fname, gmTools.html_escape_string(item['description'])])
                                continue
                        if item.is_DIRENTRY:
                                # DIRENTRY but not valid: skip
                                continue
                        # normal entry, doc obj links or data item
                        item_fname = item.save_to_file(directory = doc_dir)
                        fname = os.path.split(item_fname)[1]
                        # collect items so we can later correlate items and descriptions
                        # actually we should link to encrypted items, and to unencrypted ones
                        docs_list.append([fname, gmTools.html_escape_string(item['description'])])
                # - link to DICOMDIR if exists
                if 'DICOMDIR' in os.listdir(sandbox_dir):       # in root path
                        has_dicomdir = True
                        html_data['browse_dicomdir'] = '<li><a href="./DICOMDIR">%s</a></li>' % _('show DICOMDIR file')
                else:
                        has_dicomdir = False
                # - include DWV link if there is a DICOMDIR
                if has_dicomdir:
                        # do not clone into media base to avoid encryption,
                        # DWV will be cloned to there later on
                        dwv_sandbox_dir = self._clone_dwv()
                        if dwv_sandbox_dir is not None:
                                html_data['run_dicom_viewer'] = '<li><a href="./dwv/viewers/mobile-local/index.html">%s</a></li>' % _('run Radiology Images (DICOM) Viewer')
                # - create frontpage.html
                frontpage_fname = self._create_frontpage_html(pat, prax, sandbox_dir, html_data, docs_list)
                # - start.html (just a convenience copy of frontpage.html)
                #   (later overwritten, if encryption is requested)
                start_fname = os.path.join(sandbox_dir, 'start.html')
                try:
                        shutil.copy2(frontpage_fname, start_fname)
                except Exception:
                        _log.exception('cannot copy %s to %s', frontpage_fname, start_fname)
                # - index.html (just a convenience copy of frontpage.html)
                #   (later overwritten if encryption is requested)
                index_fname = os.path.join(sandbox_dir, 'index.html')
                try:
                        shutil.copy2(frontpage_fname, index_fname)
                except Exception:
                        _log.exception('cannot copy %s to %s', frontpage_fname, index_fname)

                # 2) encrypt content of sandbox
                if passphrase is not None:
                        encrypted = gmCrypto.encrypt_directory_content (
                                directory = sandbox_dir,
                                receiver_key_ids = None,
                                passphrase = passphrase,
                                comment = None,
                                verbose = _cfg.get(option = 'debug'),
                                remove_unencrypted = True,
                                store_passphrase_cb = store_passphrase_of_file_callback
                        )
                        if not encrypted:
                                _log.errror('cannot encrypt data in sandbox dir')
                                return False

                # 3) add never-to-be-encrypted data
                # - AUTORUN.INF
                # - README
                if passphrase:
                        self._create_autorun_inf(None, sandbox_dir)
                        self._create_readme(None, sandbox_dir)
                else:
                        self._create_autorun_inf(pat, sandbox_dir)
                        self._create_readme(pat, sandbox_dir)
                # - praxis VCF/MCF
                shutil.move(prax.vcf, os.path.join(sandbox_dir, 'praxis.vcf'))
                prax.export_as_mecard(filename = os.path.join(sandbox_dir, u'praxis.mcf'))
                # - include DWV code
                if has_dicomdir:
                        self._clone_dwv(target_dir = sandbox_dir)
                # - index.html as boilerplate for decryption
                if passphrase:
                        index_fname = self._create_index_html(prax, sandbox_dir, html_data)

                # 4) move sandbox to target dir
                target_dir = gmTools.copy_tree_content(sandbox_dir, target_base_dir)
                if target_dir is None:
                        _log.error('cannot fill target base dir')
                        return False

                return target_dir

  `def export_as_zip(self, base_dir=None, items=None, passphrase=None)`
    Expand source code

        def export_as_zip(self, base_dir=None, items=None, passphrase=None):
                _log.debug('target dir: %s', base_dir)
                export_dir = self.export(base_dir = base_dir, items = items)
                if export_dir is None:
                        _log.debug('cannot export items')
                        return None

                if passphrase:
                        zip_file = gmCrypto.create_encrypted_zip_archive_from_dir (
                                export_dir,
                                comment = _('GNUmed Patient Media'),
                                overwrite = True,
                                passphrase = passphrase,
                                verbose = _cfg.get(option = 'debug')
                        )
                        if zip_file:
                                store_passphrase_of_file(filename = zip_file, passphrase = passphrase, hash_type = 'sha256')
                        else:
                                _log.debug('cannot create zip archive')
                        return zip_file

                zip_file = gmCrypto.create_zip_archive_from_dir (
                        export_dir,
                        comment = _('GNUmed Patient Media'),
                        overwrite = True,
                        verbose = _cfg.get(option = 'debug')
                )
                if not zip_file:
                        _log.debug('cannot create zip archive')
                return zip_file

  `def get_items(self, designation=None, order_by='pk_identity, list_position, designation, description')`
    Expand source code

        def get_items(self, designation=None, order_by='pk_identity, list_position, designation, description'):
                return get_export_items(order_by = order_by, pk_identity = self.__pk_identity, designation = designation)

  `def get_printouts(self, order_by='list_position, designation, description')`
    Expand source code

        def get_printouts(self, order_by='list_position, designation, description'):
                return get_print_jobs(order_by = order_by, pk_identity = self.__pk_identity)

  `def md5_exists(self, md5=None, include_document_parts=False)`
    Expand source code

        def md5_exists(self, md5=None, include_document_parts=False):
                where_parts = [
                        'pk_identity = %(pat)s',
                        'md5_sum = %(md5)s'
                ]
                args = {
                        'pat': self.__pk_identity,
                        'md5': md5
                }

                if not include_document_parts:
                        where_parts.append('pk_doc_obj IS NULL')

                cmd = _SQL_get_export_items % ' AND '.join(where_parts)
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)

                if len(rows) == 0:
                        return None

                r = rows[0]
                return cExportItem(row = {'data': r, 'idx': idx, 'pk_field': 'pk_export_item'})

  `def path_item_exists(self, path_item_data)`
    Expand source code

        def path_item_exists(self, path_item_data):

                assert (path_item_data.startswith('DIR::')), 'invalid <path_item_data> [%s]' % path_item_data

                where_parts = [
                        'pk_identity = %(pat)s',
                        'filename = %(fname)s',
                        'pk_doc_obj IS NULL'
                ]
                args = {
                        'pat': self.__pk_identity,
                        'fname': path_item_data
                }
                SQL = _SQL_get_export_items % ' AND '.join(where_parts)
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': SQL, 'args': args}], get_col_idx = True)
                if len(rows) == 0:
                        return None

                r = rows[0]
                return cExportItem(row = {'data': r, 'idx': idx, 'pk_field': 'pk_export_item'})

  `def remove_item(self, item)`
    Expand source code

        def remove_item(self, item):
                if item.is_valid_DIRENTRY:
                        tag, node, local_fs_path = item['filename'].split('::', 2)
                        gmTools.remove_file(os.path.join(local_fs_path, DIRENTRY_README_NAME))
                elif item.is_DIRENTRY:
                        return False

                return delete_export_item(pk_export_item = item['pk_export_item'])

`class cExportItem (aPK_obj=None, row=None, link_obj=None)`

  Represents an item in the export area table

  Call init from child classes like so:

          super().__init__(aPK_obj = aPK_obj, row = row, link_obj = link_obj)

  ## Args

  `aPK_obj`
    retrieve data from backend
  - a simple value the primary key WHERE condition must be a simple column
  - a dictionary of values the primary key WHERE condition must be a subselect consuming the dict and producing the single-value primary key
  `row`
    must hold the fields
  - idx: a dict mapping field names to position
  - data: the field values in a list (as returned by cursor.fetchone() in the DB-API)
  - pk_field: the name of the primary key field OR
  - pk_obj: a dictionary suitable for passed to cursor.execute and holding the primary key values, used for composite PKs
  - for example:

        row = {
                'data': rows[0],
                'idx': idx,
                'pk_field': 'pk_XXX (the PK column name)',
                'pk_obj': {'pk_col1': pk_col1_val, 'pk_col2': pk_col2_val}
        }
        rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)
        objects = [ cChildClass(row = {'data': r, 'idx': idx, 'pk_field': 'the PK column name'}) for r in rows ]

  Expand source code

      class cExportItem(gmBusinessDBObject.cBusinessDBObject):
              """Represents an item in the export area table"""

              _cmd_fetch_payload = _SQL_get_export_items % "pk_export_item = %s"
              _cmds_store_payload = [
                      """UPDATE clin.export_item SET
                                      fk_identity = %(pk_identity)s,
                                      created_by = gm.nullify_empty_string(%(created_by)s),
                                      created_when = %(created_when)s,
                                      designation = gm.nullify_empty_string(%(designation)s),
                                      description = gm.nullify_empty_string(%(description)s),
                                      fk_doc_obj = %(pk_doc_obj)s,
                                      data = CASE
                                              WHEN %(pk_doc_obj)s IS NULL THEN coalesce(data, 'to be replaced by real data')
                                              ELSE NULL
                                      END,
                                      filename = CASE
                                              WHEN %(pk_doc_obj)s IS NULL THEN gm.nullify_empty_string(%(filename)s)
                                              ELSE NULL
                                      END
                              WHERE
                                      pk = %(pk_export_item)s
                                              AND
                                      xmin = %(xmin_export_item)s
                      """,
                      "SELECT clin.export_item_set_list_position(%(pk_export_item)s, %(list_position)s)",
                      _SQL_get_export_items % 'pk_export_item = %(pk_export_item)s'
              ]
              _updatable_fields = [
                      'pk_identity',
                      'created_when',
                      'designation',
                      'description',
                      'pk_doc_obj',
                      'filename',
                      'list_position'
              ]
              #--------------------------------------------------------
              def __init__(self, aPK_obj=None, row=None, link_obj=None):
                      super(cExportItem, self).__init__(aPK_obj = aPK_obj, row = row, link_obj = link_obj)
                      # force auto-healing if need be
                      if self._payload[self._idx['pk_identity_raw_needs_update']]:
                              _log.warning (
                                      'auto-healing export item [%s] from identity [%s] to [%s] because of document part [%s] seems necessary',
                                      self._payload[self._idx['pk_export_item']],
                                      self._payload[self._idx['pk_identity_raw']],
                                      self._payload[self._idx['pk_identity']],
                                      self._payload[self._idx['pk_doc_obj']]
                              )
                              if self._payload[self._idx['pk_doc_obj']] is None:
                                      _log.error('however, .fk_doc_obj is NULL, which should not happen, leaving things alone for manual inspection')
                                      return
                              # only flag ourselves as modified, do not actually
                              # modify any values, better safe than sorry
                              self._is_modified = True
                              self.save()
                              self.refetch_payload(ignore_changes = False, link_obj = link_obj)

              #--------------------------------------------------------
      #       def format(self):
      #               return u'%s' % self
              #--------------------------------------------------------
              def update_data(self, data=None):
                      assert (data is not None), '<data> must not be <None>'

                      if self.is_DIRENTRY or self.is_document_part:
                              return False

                      SQL = """
                              UPDATE clin.export_item SET
                                      data = %(data)s::bytea,
                                      fk_doc_obj = NULL
                              WHERE pk = %(pk)s"""
                      args = {'pk': self.pk_obj, 'data': data}
                      gmPG2.run_rw_queries(queries = [{'cmd': SQL, 'args': args}], return_data = False, get_col_idx = False)
                      # must update XMIN now ...
                      self.refetch_payload()
                      return True

              #--------------------------------------------------------
              def update_data_from_file(self, filename=None, convert_document_part=False):

                      if self.is_DIRENTRY:
                              return False

                      if self.is_document_part:
                              if not convert_document_part:
                                      return False

                      # sanity check
                      if not (os.access(filename, os.R_OK) and os.path.isfile(filename)):
                              _log.error('[%s] is not a readable file' % filename)
                              return False

                      cmd = """
                              UPDATE clin.export_item SET
                                      data = %(data)s::bytea,
                                      fk_doc_obj = NULL,
                                      filename = gm.nullify_empty_string(%(fname)s)
                              WHERE pk = %(pk)s"""
                      args = {'pk': self.pk_obj, 'fname': filename}
                      if not gmPG2.file2bytea(query = cmd, filename = filename, args = args):
                              return False

                      # must update XMIN now ...
                      self.refetch_payload()
                      return True

              #--------------------------------------------------------
              def save_to_file(self, aChunkSize:int=0, filename:str=None, directory:str=None, passphrase:str=None, convert2pdf:bool=False) -> str:
                      """Save this entry to disk.

                      Args:
                              filename: The filename to save into, unless this is a DIRENTRY.
                              directory: The directory to save the DIRENTRY _content into, if this is a DIRENTRY.
                              passphrase: Encrypt file(s) with this passphrase, if not _None_.
                              convert2pdf: Convert file(s) to PDF on the way out. Before encryption, that is.

                      Returns:
                              Directory for DIRENTRIES, or filename, or None on failure.
                      """
                      if self.is_DIRENTRY and convert2pdf:
                              # cannot convert dir entries to PDF
                              return None

                      # data linked from archive ?
                      part_fname = self.__save_doc_obj (
                              filename = filename,
                              directory = directory,
                              passphrase = passphrase,
                              convert2pdf = convert2pdf
                      )
                      if part_fname is False:
                              return None

                      if part_fname is not None:
                              return part_fname

                      # valid DIRENTRY ?
                      if self.is_valid_DIRENTRY:
                              target_dir = self.__save_direntry (
                                      directory,
                                      passphrase = passphrase
                              )
                              if target_dir is False:
                                      return None

                              if target_dir is not None:
                                      return target_dir

                      # but still a DIRENTRY ?
                      if self.is_DIRENTRY:
                              # yes, but apparently not valid (anymore), say,
                              # other machine or dir not found locally
                              return None

                      # normal item with data in export area table
                      return self.__save_normal_item (
                              filename = filename,
                              directory = directory,
                              passphrase = passphrase,
                              convert2pdf = convert2pdf
                      )

              #--------------------------------------------------------
              def display_via_mime(self, chunksize=0, block=None):

                      # document part
                      if self._payload[self._idx['pk_doc_obj']] is not None:
                              return self.document_part.display_via_mime(chunksize = chunksize, block = block)

                      # DIR entry
                      if self._payload[self._idx['filename']].startswith('DIR::'):
                              # FIXME: error handling with malformed entries
                              tag, node, path = self._payload[self._idx['filename']].split('::', 2)
                              if node != platform.node():
                                      msg = _(
                                              'This item points to a directory on the computer named:\n'
                                              ' %s\n'
                                              'You are, however, currently using another computer:\n'
                                              ' %s\n'
                                              'Directory items can only be viewed/saved/exported\n'
                                              'on the computer they are pointing to.'
                                      ) % (node, platform.node())
                                      return False, msg
                              success, msg = gmMimeLib.call_viewer_on_file(path, block = block)
                              return success, msg

                      # data -> save
                      fname = self.save_to_file(aChunkSize = chunksize)
                      if fname is None:
                              return False, ''

                      success, msg = gmMimeLib.call_viewer_on_file(fname, block = block)
                      if not success:
                              return False, msg

                      return True, ''

              #--------------------------------------------------------
              def get_useful_filename(self, patient=None, directory=None):
                      patient_part = ''
                      if patient is not None:
                              patient_part = '-%s' % patient.subdir_name

                      # preserve original filename extension if available
                      suffix = '.dat'
                      if self._payload[self._idx['filename']] is not None:
                              tmp, suffix = os.path.splitext (
                                      gmTools.fname_sanitize(self._payload[self._idx['filename']]).casefold()
                              )
                              if suffix == '':
                                      suffix = '.dat'
                      fname = gmTools.get_unique_filename (
                              prefix = '%s-gm-export_item%s-' % (self._payload[self._idx['list_position']], patient_part),
                              suffix = suffix,
                              tmp_dir = directory
                      )
                      return fname

              #--------------------------------------------------------
              # helpers
              #--------------------------------------------------------
              def __save_normal_item(self, filename:str=None, directory:str=None, passphrase:str=None, convert2pdf:bool=False) -> str:
                      _SQL = 'SELECT substring(data FROM %(start)s FOR %(size)s) FROM clin.export_item WHERE pk = %(pk)s'
                      tmp_fname = gmTools.get_unique_filename()
                      success = gmPG2.bytea2file (
                              data_query = {'cmd': _SQL, 'args': {'pk': self.pk_obj}},
                              filename = tmp_fname,
                              data_size = self._payload[self._idx['size']]
                      )
                      if not success:
                              return None

                      tmp_fname = gmMimeLib.adjust_extension_by_mimetype(tmp_fname)
                      if convert2pdf:
                              tmp_fname = gmMimeLib.convert_file(filename = tmp_fname, target_mime = 'application/pdf', target_extension = '.pdf')
                      if filename is None:
                              target_fname = self.get_useful_filename(directory = directory)
                      else:
                              target_fname = filename
                      if passphrase is None:
                              if not gmTools.rename_file(tmp_fname, target_fname, overwrite = True, allow_symlink = True):
                                      return None

                              if filename is None:
                                      return gmMimeLib.adjust_extension_by_mimetype(target_fname)

                              return target_fname

                      enc_fname = gmCrypto.encrypt_file (
                              filename = tmp_fname,
                              passphrase = passphrase,
                              verbose = _cfg.get(option = 'debug'),
                              remove_unencrypted = True,
                              convert2pdf = False     # already done, if desired
                      )
                      removed = gmTools.remove_file(tmp_fname)
                      if enc_fname is None:
                              _log.error('cannot encrypt or, possibly, convert')
                              return None

                      if not removed:
                              _log.error('cannot remove unencrypted file')
                              gmTools.remove_file(enc_fname)
                              return None

                      return enc_fname

              #--------------------------------------------------------
              def __save_doc_obj(self, filename=None, directory=None, passphrase=None, convert2pdf:bool=False):
                      """Save doc object part into target.

                      None: not a doc obj
                      True: success
                      False: failure (to save/convert/encrypt/remove unencrypted)
                      """
                      if self._payload[self._idx['pk_doc_obj']] is None:
                              return None

                      part = self.document_part
                      if filename is None:
                              filename = part.get_useful_filename (
                                      make_unique = False,
                                      directory = directory,
                                      include_gnumed_tag = False,
                                      date_before_type = True,
                                      name_first = False
                              )
                      path, name = os.path.split(filename)
                      filename = os.path.join(path, '%s-%s' % (self._payload[self._idx['list_position']], name))
                      if convert2pdf:
                              target_mime = 'application/pdf'
                              target_ext = '.pdf'
                      else:
                              target_mime = None
                              target_ext = None
                      part_fname = part.save_to_file (
                              filename = filename,
                              target_mime = target_mime,
                              target_extension = target_ext,
                              ignore_conversion_problems = False
                      )
                      if part_fname is None:
                              _log.error('cannot save document part to file')
                              return False

                      if passphrase is None:
                              return part_fname

                      enc_filename = gmCrypto.encrypt_file (
                              filename = part_fname,
                              passphrase = passphrase,
                              verbose = _cfg.get(option = 'debug'),
                              remove_unencrypted = True
                      )
                      removed = gmTools.remove_file(part_fname)
                      if enc_filename is None:
                              _log.error('cannot encrypt')
                              return False

                      if removed:
                              return enc_filename

                      _log.error('cannot remove unencrypted file')
                      gmTools.remove_file(enc_filename)
                      return False

              #--------------------------------------------------------
              def __save_direntry(self, directory=None, passphrase=None):
                      """Move DIRENTRY source into target.

                      None: not a DIRENTRY
                      True: success
                      False: failure
                      """
                      # do not process malformed entries
                      try:
                              tag, node, local_fs_path = self._payload[self._idx['filename']].split('::', 2)
                      except ValueError:
                              _log.exception('malformed DIRENTRY: [%s]', self._payload[self._idx['filename']])
                              return False
                      # source and target paths must not overlap
                      if directory is None:
                              directory = gmTools.mk_sandbox_dir(prefix = 'exp-')
                      if directory.startswith(local_fs_path):
                              _log.error('cannot dump DIRENTRY item [%s]: must not be subdirectory of target dir [%s]', self._payload[self._idx['filename']], directory)
                              return False
                      if local_fs_path.startswith(directory):
                              _log.error('cannot dump DIRENTRY item [%s]: target dir [%s] must not be subdirectory of DIRENTRY', self._payload[self._idx['filename']], directory)
                              return False

                      _log.debug('dumping DIRENTRY item [%s] into [%s]', self._payload[self._idx['filename']], directory)
                      sandbox_dir = gmTools.mk_sandbox_dir()
                      _log.debug('sandbox: %s', sandbox_dir)
                      tmp = gmTools.copy_tree_content(local_fs_path, sandbox_dir)
                      if tmp is None:
                              _log.error('cannot dump DIRENTRY item [%s] into [%s]: copy error', self._payload[self._idx['filename']], sandbox_dir)
                              return False

                      gmTools.remove_file(os.path.join(tmp, DIRENTRY_README_NAME))
                      if passphrase is not None:
                              _log.debug('encrypting sandbox: %s', sandbox_dir)
                              encrypted = gmCrypto.encrypt_directory_content (
                                      directory = sandbox_dir,
                                      passphrase = passphrase,
                                      verbose = _cfg.get(option = 'debug'),
                                      remove_unencrypted = True
                              )
                              if not encrypted:
                                      _log.error('cannot dump DIRENTRY item [%s]: encryption problem in [%s]', self._payload[self._idx['filename']], sandbox_dir)
                                      return False

                      tmp = gmTools.copy_tree_content(sandbox_dir, directory)
                      if tmp is None:
                              _log.debug('cannot dump DIRENTRY item [%s] into [%s]: copy error', self._payload[self._idx['filename']], directory)
                              return False

                      return directory

              #--------------------------------------------------------
              # properties
              #--------------------------------------------------------
              def _get_is_doc_part(self):
                      return self._payload[self._idx['pk_doc_obj']] is not None

              is_document_part = property(_get_is_doc_part)

              #--------------------------------------------------------
              def _get_doc_part(self):
                      if self._payload[self._idx['pk_doc_obj']] is None:
                              return None
                      return gmDocuments.cDocumentPart(aPK_obj = self._payload[self._idx['pk_doc_obj']])

              document_part = property(_get_doc_part)

              #--------------------------------------------------------
              def _get_is_print_job(self):
                      return self._payload[self._idx['designation']] == PRINT_JOB_DESIGNATION

              def _set_is_print_job(self, is_print_job):
                      desig = gmTools.bool2subst(is_print_job, PRINT_JOB_DESIGNATION, None, None)
                      if self._payload[self._idx['designation']] == desig:
                              return
                      self['designation'] = desig
                      self.save()

              is_print_job = property(_get_is_print_job, _set_is_print_job)

              #--------------------------------------------------------
              def _is_DIRENTRY(self):
                      """Check whether this item looks like a DIRENTRY."""
                      if self._payload[self._idx['filename']] is None:
                              return False
                      if not self._payload[self._idx['filename']].startswith('DIR::'):
                              return False
                      if len(self._payload[self._idx['filename']].split('::', 2)) != 3:
                              return False
                      return True

              is_DIRENTRY = property(_is_DIRENTRY)

              #--------------------------------------------------------
              def _is_valid_DIRENTRY(self):
                      """Check whether this item is a _valid_ DIRENTRY."""
                      if not self.is_DIRENTRY:
                              return False
                      # malformed ?
                      try:
                              tag, node, local_fs_path = self._payload[self._idx['filename']].split('::', 2)
                      except ValueError:
                              # should not happen because structure already checked in .is_DIRENTRY,
                              # better safe than sorry
                              _log.exception('DIRENTRY [%s]: malformed', self._payload[self._idx['filename']])
                              return False
                      # this machine ?
                      if node != platform.node():
                              _log.warning('DIRENTRY [%s]: not on this machine (%s)', self._payload[self._idx['filename']], platform.node())
                              return False
                      # valid path ?
                      if not os.path.isdir(local_fs_path):
                              _log.warning('DIRENTRY [%s]: directory not found (old DIRENTRY ?)', self._payload[self._idx['filename']])
                              return False
                      return True

              is_valid_DIRENTRY = property(_is_valid_DIRENTRY)

              #--------------------------------------------------------
              def _is_DICOM_directory(self):
                      """Check whether this item points to a DICOMDIR."""
                      if not self.is_valid_DIRENTRY:
                              return False

                      tag, node, local_fs_path = self._payload[self._idx['filename']].split('::', 2)
                      found_DICOMDIR = False
                      for fs_entry in os.listdir(local_fs_path):
                              # found a subdir
                              if os.path.isdir(os.path.join(local_fs_path, fs_entry)):
                                      # allow for any number of subdirs
                                      continue
                              # found a file
                              if fs_entry != 'DICOMDIR':
                                      # not named "DICOMDIR" -> not a DICOMDIR DIRENTRY
                                      return False

                              # must be named DICOMDIR -> that's the only file allowed (and required) in ./
                              found_DICOMDIR = True
                      return found_DICOMDIR

              is_DICOM_directory = property(_is_DICOM_directory)

              #--------------------------------------------------------
              def _has_files_in_root(self):
                      """True if there are files in the root directory."""
                      tag, node, local_fs_path = self._payload[self._idx['filename']].split('::', 2)
                      for fs_entry in os.listdir(local_fs_path):
                              if os.path.isfile(fs_entry):
                                      _log.debug('has files in top level: %s', local_fs_path)
                                      return True
                      return False

              has_files_in_root = property(_has_files_in_root)

  ### Ancestors

  - cBusinessDBObject

  ### Instance variables

  `var document_part`
    Expand source code

        def _get_doc_part(self):
                if self._payload[self._idx['pk_doc_obj']] is None:
                        return None
                return gmDocuments.cDocumentPart(aPK_obj = self._payload[self._idx['pk_doc_obj']])

  `var has_files_in_root`

    True if there are files in the root directory.

    Expand source code

        def _has_files_in_root(self):
                """True if there are files in the root directory."""
                tag, node, local_fs_path = self._payload[self._idx['filename']].split('::', 2)
                for fs_entry in os.listdir(local_fs_path):
                        if os.path.isfile(fs_entry):
                                _log.debug('has files in top level: %s', local_fs_path)
                                return True
                return False

  `var is_DICOM_directory`

    Check whether this item points to a DICOMDIR.

    Expand source code

        def _is_DICOM_directory(self):
                """Check whether this item points to a DICOMDIR."""
                if not self.is_valid_DIRENTRY:
                        return False

                tag, node, local_fs_path = self._payload[self._idx['filename']].split('::', 2)
                found_DICOMDIR = False
                for fs_entry in os.listdir(local_fs_path):
                        # found a subdir
                        if os.path.isdir(os.path.join(local_fs_path, fs_entry)):
                                # allow for any number of subdirs
                                continue
                        # found a file
                        if fs_entry != 'DICOMDIR':
                                # not named "DICOMDIR" -> not a DICOMDIR DIRENTRY
                                return False

                        # must be named DICOMDIR -> that's the only file allowed (and required) in ./
                        found_DICOMDIR = True
                return found_DICOMDIR

  `var is_DIRENTRY`

    Check whether this item looks like a DIRENTRY.

    Expand source code

        def _is_DIRENTRY(self):
                """Check whether this item looks like a DIRENTRY."""
                if self._payload[self._idx['filename']] is None:
                        return False
                if not self._payload[self._idx['filename']].startswith('DIR::'):
                        return False
                if len(self._payload[self._idx['filename']].split('::', 2)) != 3:
                        return False
                return True

  `var is_document_part`
    Expand source code

        def _get_is_doc_part(self):
                return self._payload[self._idx['pk_doc_obj']] is not None

  `var is_print_job`
    Expand source code

        def _get_is_print_job(self):
                return self._payload[self._idx['designation']] == PRINT_JOB_DESIGNATION

  `var is_valid_DIRENTRY`

    Check whether this item is a valid DIRENTRY.

    Expand source code

        def _is_valid_DIRENTRY(self):
                """Check whether this item is a _valid_ DIRENTRY."""
                if not self.is_DIRENTRY:
                        return False
                # malformed ?
                try:
                        tag, node, local_fs_path = self._payload[self._idx['filename']].split('::', 2)
                except ValueError:
                        # should not happen because structure already checked in .is_DIRENTRY,
                        # better safe than sorry
                        _log.exception('DIRENTRY [%s]: malformed', self._payload[self._idx['filename']])
                        return False
                # this machine ?
                if node != platform.node():
                        _log.warning('DIRENTRY [%s]: not on this machine (%s)', self._payload[self._idx['filename']], platform.node())
                        return False
                # valid path ?
                if not os.path.isdir(local_fs_path):
                        _log.warning('DIRENTRY [%s]: directory not found (old DIRENTRY ?)', self._payload[self._idx['filename']])
                        return False
                return True

  ### Methods

  `def display_via_mime(self, chunksize=0, block=None)`
    Expand source code

        def display_via_mime(self, chunksize=0, block=None):

                # document part
                if self._payload[self._idx['pk_doc_obj']] is not None:
                        return self.document_part.display_via_mime(chunksize = chunksize, block = block)

                # DIR entry
                if self._payload[self._idx['filename']].startswith('DIR::'):
                        # FIXME: error handling with malformed entries
                        tag, node, path = self._payload[self._idx['filename']].split('::', 2)
                        if node != platform.node():
                                msg = _(
                                        'This item points to a directory on the computer named:\n'
                                        ' %s\n'
                                        'You are, however, currently using another computer:\n'
                                        ' %s\n'
                                        'Directory items can only be viewed/saved/exported\n'
                                        'on the computer they are pointing to.'
                                ) % (node, platform.node())
                                return False, msg
                        success, msg = gmMimeLib.call_viewer_on_file(path, block = block)
                        return success, msg

                # data -> save
                fname = self.save_to_file(aChunkSize = chunksize)
                if fname is None:
                        return False, ''

                success, msg = gmMimeLib.call_viewer_on_file(fname, block = block)
                if not success:
                        return False, msg

                return True, ''

  `def get_useful_filename(self, patient=None, directory=None)`
    Expand source code

        def get_useful_filename(self, patient=None, directory=None):
                patient_part = ''
                if patient is not None:
                        patient_part = '-%s' % patient.subdir_name

                # preserve original filename extension if available
                suffix = '.dat'
                if self._payload[self._idx['filename']] is not None:
                        tmp, suffix = os.path.splitext (
                                gmTools.fname_sanitize(self._payload[self._idx['filename']]).casefold()
                        )
                        if suffix == '':
                                suffix = '.dat'
                fname = gmTools.get_unique_filename (
                        prefix = '%s-gm-export_item%s-' % (self._payload[self._idx['list_position']], patient_part),
                        suffix = suffix,
                        tmp_dir = directory
                )
                return fname

  `def save_to_file(self, aChunkSize: int = 0, filename: str = None, directory: str = None, passphrase: str = None, convert2pdf: bool = False) ‑> str`

    Save this entry to disk.

    ## Args

    `filename`
      The filename to save into, unless this is a DIRENTRY.
    `directory`
      The directory to save the DIRENTRY _content into, if this is a DIRENTRY.
    `passphrase`
      Encrypt file(s) with this passphrase, if not None.
    `convert2pdf`
      Convert file(s) to PDF on the way out. Before encryption, that is.

    ## Returns

    Directory for DIRENTRIES, or filename, or None on failure.

    Expand source code

        def save_to_file(self, aChunkSize:int=0, filename:str=None, directory:str=None, passphrase:str=None, convert2pdf:bool=False) -> str:
                """Save this entry to disk.

                Args:
                        filename: The filename to save into, unless this is a DIRENTRY.
                        directory: The directory to save the DIRENTRY _content into, if this is a DIRENTRY.
                        passphrase: Encrypt file(s) with this passphrase, if not _None_.
                        convert2pdf: Convert file(s) to PDF on the way out. Before encryption, that is.

                Returns:
                        Directory for DIRENTRIES, or filename, or None on failure.
                """
                if self.is_DIRENTRY and convert2pdf:
                        # cannot convert dir entries to PDF
                        return None

                # data linked from archive ?
                part_fname = self.__save_doc_obj (
                        filename = filename,
                        directory = directory,
                        passphrase = passphrase,
                        convert2pdf = convert2pdf
                )
                if part_fname is False:
                        return None

                if part_fname is not None:
                        return part_fname

                # valid DIRENTRY ?
                if self.is_valid_DIRENTRY:
                        target_dir = self.__save_direntry (
                                directory,
                                passphrase = passphrase
                        )
                        if target_dir is False:
                                return None

                        if target_dir is not None:
                                return target_dir

                # but still a DIRENTRY ?
                if self.is_DIRENTRY:
                        # yes, but apparently not valid (anymore), say,
                        # other machine or dir not found locally
                        return None

                # normal item with data in export area table
                return self.__save_normal_item (
                        filename = filename,
                        directory = directory,
                        passphrase = passphrase,
                        convert2pdf = convert2pdf
                )

  `def update_data(self, data=None)`
    Expand source code

        def update_data(self, data=None):
                assert (data is not None), '<data> must not be <None>'

                if self.is_DIRENTRY or self.is_document_part:
                        return False

                SQL = """
                        UPDATE clin.export_item SET
                                data = %(data)s::bytea,
                                fk_doc_obj = NULL
                        WHERE pk = %(pk)s"""
                args = {'pk': self.pk_obj, 'data': data}
                gmPG2.run_rw_queries(queries = [{'cmd': SQL, 'args': args}], return_data = False, get_col_idx = False)
                # must update XMIN now ...
                self.refetch_payload()
                return True

  `def update_data_from_file(self, filename=None, convert_document_part=False)`
    Expand source code

        def update_data_from_file(self, filename=None, convert_document_part=False):

                if self.is_DIRENTRY:
                        return False

                if self.is_document_part:
                        if not convert_document_part:
                                return False

                # sanity check
                if not (os.access(filename, os.R_OK) and os.path.isfile(filename)):
                        _log.error('[%s] is not a readable file' % filename)
                        return False

                cmd = """
                        UPDATE clin.export_item SET
                                data = %(data)s::bytea,
                                fk_doc_obj = NULL,
                                filename = gm.nullify_empty_string(%(fname)s)
                        WHERE pk = %(pk)s"""
                args = {'pk': self.pk_obj, 'fname': filename}
                if not gmPG2.file2bytea(query = cmd, filename = filename, args = args):
                        return False

                # must update XMIN now ...
                self.refetch_payload()
                return True

  ### Inherited members

  - `cBusinessDBObject`:
    - `fields_as_dict`
    - `format`
    - `get_fields`
    - `get_patient`
    - `get_updatable_fields`
    - `is_modified`
    - `patient_pk`
    - `refetch_payload`
    - `same_payload`
    - `save`
    - `save_payload`
    - `staff_id`