/*******************************************************************************
 * Compute the interferometric baseline between reference and repeat           *
 * images.  Also estimates the crude offset for image matching.                *
 *******************************************************************************/
/********************************************************************************
 * Creator:  Matt Wei, 04/26/10 *
 *										*
 * Based on the program ALOS_baseline by * Creator:  Sandwell and Rob Mellors
 ** (San Diego State University, Scripps Institution of Oceanography)  * Date :
 *06/07/2007                                                         *
 ********************************************************************************/

#include "image_sio.h"
#include "lib_functions.h"

char *USAGE = "Usage: (two modes)\n"
              "mode 1:\n\n"
              "SAT_baseline PRM_master PRM_aligned \n\n"
              "PRM_master 	   PRM file for reference image\n"
              "PRM_aligned 	   PRM file of secondary image\n"
              "Please make sure the orbit file data is in PRM \n"
              "(writes out parameters for appending to PRM file)\n"
              "\nor mode 2:\n\n"
              "SAT_baseline -input file\n\n"
              "file: list of PRM files\n"
              "first file is assumed to be master\n"
              "following are aligneds\n"
              "(writes out decimal year, Bperp, and PRM name)\n";

/* function prototypes */
double find_distance(double, double, double, double, double, double);
double find_alpha_degrees(double, double);
void find_unit_vectors(double, double, double, double *, double *, double *, double *);
void endpoint_distance(int, double, double, double, double, double *, double *, double *, double *, int *);
void find_parallel_perp_baseline(struct PRM, struct PRM, double, double *, double *);
void write_prm_baseline(struct PRM);
void get_sign(struct PRM, double, double, double, double, int *);
void write_bperp(struct PRM, char *);
void parse_command_line(char **, int *, int *);
void read_input_file(char *, int, char **);
void ENVI_baseline(struct PRM *, struct ALOS_ORB *, int, int, char **, double);
void read_all_ENVI_ldr(struct PRM *, struct ALOS_ORB *, int);
void read_ENVI_orb(FILE *, struct PRM *, struct ALOS_ORB *);
void ENVI_llt2rat_sub(char *, double *, double *);

int main(int argc, char **argv) {
	int i;
	int input_flag, nfiles;
	double fs0 = 0.;

	struct PRM *r;        /* reference orbit is 0; repeats are > 0*/
	struct ALOS_ORB *orb; /* reference orbit is 0; repeats are > 0*/
	char **filename;
	FILE *prmfile;

	if (argc < 3)
		die(USAGE, "");

	verbose = 0;
	input_flag = 0;

	/* read command line */
	parse_command_line(argv, &nfiles, &input_flag);

	filename = malloc(nfiles * sizeof(char *));
	for (i = 0; i < nfiles; i++)
		filename[i] = malloc(128 * sizeof(char));

	r = malloc(nfiles * sizeof(struct PRM));

	if (input_flag == 1)
		read_input_file(argv[2], nfiles, filename);

	for (i = 0; i < nfiles; i++) {
		if (input_flag == 0)
			strcpy(filename[i], argv[i + 1]);
		if ((prmfile = fopen(filename[i], "r")) == NULL)
			die("Can't open prmfile ", filename[i]);

		get_sio_struct(prmfile, &r[i]);

		/* check whether range sampling rate is same. If not, warning */
		if (i == 0)
			fs0 = r[0].fs;
		if (r[i].fs != fs0) {
			fprintf(stderr, "\nWARNING:\nRange_sampling_rate is not consistant.\nYou "
			                "need to do FBD/FBS conversion.\n\n");
		}

		fclose(prmfile);
	}

	fprintf(stderr, "SC_identity = %d \n", r[0].SC_identity);
	orb = malloc(nfiles * sizeof(struct ALOS_ORB));
	read_all_ENVI_ldr(r, orb, nfiles);
	ENVI_baseline(r, orb, nfiles, input_flag, filename, fs0);

	return (EXIT_SUCCESS);
}
/*---------------------------------------------------------------------------*/
/* Get time info and find the orbit */
void read_all_ENVI_ldr(struct PRM *r, struct ALOS_ORB *orb, int nfiles) {
	int i;
	FILE *ldrfile;

	for (i = 0; i < nfiles; i++) {
		if (i == 0)
			fprintf(stderr, "......master LED file %s \n", r[0].led_file);
		if (i != 0)
			fprintf(stderr, ".........aligned LED file %s \n", r[i].led_file);

		/* open each ldrfile and read into structure r */
		if ((ldrfile = fopen(r[i].led_file, "r")) == NULL)
			die("Can't open ldrfile %s", r[i].led_file);

		read_ENVI_orb(ldrfile, &r[i], &orb[i]);

		fclose(ldrfile);
	}
}

/*---------------------------------------------------------------------------*/
void ENVI_baseline(struct PRM *r, struct ALOS_ORB *orb, int nfiles, int input_flag, char **filename, double fs0) {

	int ii, nd, ir;
	int k, ns, ns2, m1, m2, m3, sign1, sign2, sign3;
	double dr, dt, ds;
	double bv1, bv2, bv3, bh1, bh2, bh3;
	double t11, t12, t21, t22, t23;
	double x11, y11, z11, x12, y12, z12, x13, y13, z13;
	double x21, y21, z21, x22, y22, z22, x23, y23, z23;
	double ru1, ru2, ru3, xu1, yu1, zu1, xu2, yu2, zu2, xu3, yu3, zu3;
	double ts, xs, ys, zs;
	/* double  rr1, rr2, t13; */ /* near range from reference and repeat orbits */
	double b1, b2, b3, bpara, bperp;
	double *pt, *p, *pv, pt0;
	double height, re_c, vg, vtot, rdot;
	double radar_look[3] = {0, 0, 0};
	double re, rho, b, theta;
	double t_vel, t_sta, x_vel, x_sta, y_vel, y_sta, z_vel, z_sta, ru33, xu33, yu33, zu33, o1x[3], o1y[3], o1z[3], ru4, xu4, yu4,
	    zu4;
	double glob_look[3], target[3], target_llt[3], fll;
	double target_rat_ref[3] = {0, 0, 0};
	double target_rat_rep[3] = {0, 0, 0};
	double far_range;

	/* reference orbit */
	get_seconds(r[0], &t11, &t12);
	// t13 = (t11 + t12)/2.;
	dr = 0.5 * SOL / fs0;
	dt = 1.0 / r[0].prf;
	// rr1 = r[0].near_range;
	ns = (int)((t12 - t11) / dt); /* seconds of frame */
	dt = (t12 - t11) / (ns - 1);
	ns2 = ns * 2;

	nd = orb[0].nd;
	pt = malloc(nd * sizeof(double));
	p = malloc(nd * sizeof(double));
	pv = malloc(nd * sizeof(double));

	for (ii = 1; ii < nfiles; ii++) {

		get_seconds(r[ii], &t21, &t22);
		t23 = (t21 + t22) / 2.;
		// rr2 = r[ii].near_range;

		pt0 = (24.0 * 60.0 * 60.0) * orb[ii].id + orb[ii].sec;
		for (k = 0; k < nd; k++)
			pt[k] = pt0 + k * orb[ii].dsec;

		verbose = 0;
		/* interpolate_ALOS_orbit assumes p, pt, and pv ate allocated and pt
		 * assigned */
		interpolate_ALOS_orbit(&orb[ii], pt, p, pv, t21, &x21, &y21, &z21, &ir);

		/* look at other orbit information and recalculate the height using the
		 * ashift */
		calc_height_velocity(&orb[ii], &r[ii], t22, t22, &height, &re_c, &vg, &vtot, &rdot);
		r[ii].ht_end = height + re_c - r[ii].RE;
		calc_height_velocity(&orb[ii], &r[ii], t23, t23, &height, &re_c, &vg, &vtot, &rdot);
		r[ii].ht = height + re_c - r[ii].RE;
		calc_height_velocity(&orb[ii], &r[ii], t21, t21, &height, &re_c, &vg, &vtot, &rdot);
		r[ii].ht_start = height + re_c - r[ii].RE;
		// fd_orbit = -2.0*rdot/r[ii].lambda;

		interpolate_ALOS_orbit(&orb[ii], pt, p, pv, t22, &x22, &y22, &z22, &ir);

		interpolate_ALOS_orbit(&orb[ii], pt, p, pv, t23, &x23, &y23, &z23, &ir);

		/* loop over reference orbit 				*/
		/* add 2 scene lengths (ns2) for buffer at each end 	*/

		b1 = b2 = b3 = -1.0;

		pt0 = (24.0 * 60.0 * 60.0) * orb[0].id + orb[0].sec;
		for (k = 0; k < nd; k++)
			pt[k] = pt0 + k * orb[0].dsec;

		/* set some default values 				*/

		m1 = -99999;
		x11 = y11 = z11 = -99999.0;
		x12 = y12 = z12 = -99999.0;
		x13 = y13 = z13 = -99999.0;

		for (k = -ns2; k < ns + ns2; k++) {
			ts = t11 + k * dt;
			interpolate_ALOS_orbit(&orb[0], pt, p, pv, ts, &xs, &ys, &zs, &ir);

			ds = find_distance(xs, ys, zs, x21, y21, z21);
			if (b1 < 0.0 || ds < b1)
				endpoint_distance(k, ds, xs, ys, zs, &b1, &x11, &y11, &z11, &m1);

			ds = find_distance(xs, ys, zs, x22, y22, z22);
			if (b2 < 0.0 || ds < b2)
				endpoint_distance(k, ds, xs, ys, zs, &b2, &x12, &y12, &z12, &m2);

			ds = find_distance(xs, ys, zs, x23, y23, z23);
			if (b3 < 0.0 || ds < b3)
				endpoint_distance(k, ds, xs, ys, zs, &b3, &x13, &y13, &z13, &m3);
		}

		/* compute more orbital information at the min baseline based on m1 */

		ts = t11 + m1 * dt;
		calc_height_velocity(&orb[0], &r[0], ts, ts, &height, &re_c, &vg, &vtot, &rdot);
		// fd_orbit = -2.0*rdot/r[0].lambda;

		/* shouldn't happen ..					*/
		if (x11 == -99999.0)
			die("x11 not initialized", "");
		if (x12 == -99999.0)
			die("x12 not initialized", "");
		if (m1 == -99999)
			die("m1 not initialized", "");

		/* put in structure 					*/
		r[ii].baseline_start = b1;
		r[ii].baseline_end = b2;
		r[ii].baseline_center = b3;

		/* compute unit vectors 				*/
		find_unit_vectors(x11, y11, z11, &ru1, &xu1, &yu1, &zu1);
		find_unit_vectors(x12, y12, z12, &ru2, &xu2, &yu2, &zu2);
		find_unit_vectors(x13, y13, z13, &ru3, &xu3, &yu3, &zu3);

		/* compute sign of horizontal baseline 			*/

		get_sign(r[ii], x11, y11, x21, y21, &sign1);
		get_sign(r[ii], x12, y12, x22, y22, &sign2);
		get_sign(r[ii], x13, y13, x23, y23, &sign3);

		/* compute baseline components (horizontal and vertical) */
		bv1 = (x21 - x11) * xu1 + (y21 - y11) * yu1 + (z21 - z11) * zu1;
		bh1 = sign1 * sqrt(b1 * b1 - bv1 * bv1);

		bv2 = (x22 - x12) * xu2 + (y22 - y12) * yu2 + (z22 - z12) * zu2;
		bh2 = sign2 * sqrt(b2 * b2 - bv2 * bv2);

		bv3 = (x23 - x13) * xu3 + (y23 - y13) * yu3 + (z23 - z13) * zu3;
		bh3 = sign3 * sqrt(b3 * b3 - bv3 * bv3);

		/* angle from horizontal 				*/
		r[ii].alpha_start = find_alpha_degrees(bv1, bh1);
		r[ii].alpha_end = find_alpha_degrees(bv2, bh2);
		r[ii].alpha_center = find_alpha_degrees(bv3, bh3);

		/* calculate parallel baseline 				*/
		find_parallel_perp_baseline(r[0], r[ii], dr, &bpara, &bperp);
		r[ii].bpara = bpara;
		r[ii].bperp = bperp;

		/* find expected offset in pixels (rshift and yshift) 	*/
		/*
		r[ii].ashift = -1*m1;
		r[ii].rshift = -1*(int) (r[ii].bpara/dr + (rr2 - rr1)/dr);
		*/

		/* a more accurate way to estimate offset in pixels    */

		/* since t11 point is out of scene, I need add a fraction of orbit time to
		 * it  */

		pt0 = (24.0 * 60.0 * 60.0) * orb[0].id + orb[0].sec;
		for (k = 0; k < nd; k++)
			pt[k] = pt0 + k * orb[0].dsec;
		t_sta = t11 + 2.0;
		interpolate_ALOS_orbit(&orb[0], pt, p, pv, t_sta, &x_sta, &y_sta, &z_sta, &ir);

		re = r[0].RE;
		far_range = r[0].near_range + dr * r[0].num_rng_bins;
		rho = (r[0].near_range + far_range) / 2.0;
		b = r[0].ht + r[0].RE;
		theta = acos((b * b + rho * rho - re * re) / 2 / b / rho);

		/* find a unit look vector point to middle range of first line of the scene
		 */
		/* in radar coordinate  				*/
		radar_look[0] = 0;
		radar_look[1] = cos(theta);
		radar_look[2] = -sin(theta);

		/* form a rotation matrix to convert the look vector from radar
		   coordinate to global cartesian coordinate           */

		find_unit_vectors(x_sta, y_sta, z_sta, &ru33, &xu33, &yu33, &zu33);

		o1y[0] = -xu33;
		o1y[1] = -yu33;
		o1y[2] = -zu33;

		/* get the velocity of the satellite   			*/
		pt0 = (24.0 * 60.0 * 60.0) * orb[0].id + orb[0].sec;
		for (k = 0; k < nd; k++)
			pt[k] = pt0 + k * orb[0].dsec;
		t_vel = t11 + 2.1;
		interpolate_ALOS_orbit(&orb[0], pt, p, pv, t_vel, &x_vel, &y_vel, &z_vel, &ir);

		find_unit_vectors(x_vel - x_sta, y_vel - y_sta, z_vel - z_sta, &ru4, &xu4, &yu4, &zu4);
		o1x[0] = xu4;
		o1x[1] = yu4;
		o1x[2] = zu4;

		cross3_(o1x, o1y, o1z);

		/* look vector in global cartesian cooridate is     	*/
		glob_look[0] = radar_look[0] * o1x[0] + radar_look[1] * o1y[0] + radar_look[2] * o1z[0];
		glob_look[1] = radar_look[0] * o1x[1] + radar_look[1] * o1y[1] + radar_look[2] * o1z[1];
		glob_look[2] = radar_look[0] * o1x[2] + radar_look[1] * o1y[2] + radar_look[2] * o1z[2];

		/* shoot the vector on the ground and get the tie point */

		target[0] = x_sta + glob_look[0] * rho;
		target[1] = y_sta + glob_look[1] * rho;
		target[2] = z_sta + glob_look[2] * rho;

		fll = (r[0].ra - r[0].rc) / r[0].ra;
		xyz2plh(target, target_llt, r[0].ra, fll);

		fprintf(stderr, "lon_tie_point =  %f\n", target_llt[1]);
		fprintf(stderr, "lat_tie_point =  %f\n", target_llt[0]);

		ENVI_llt2rat_sub(filename[0], target_llt, target_rat_ref);
		ENVI_llt2rat_sub(filename[ii], target_llt, target_rat_rep);

		/* find expected offset in pixels (rshift and yshift)   */
		r[ii].ashift = target_rat_rep[1] - target_rat_ref[1];
		r[ii].rshift = target_rat_rep[0] - target_rat_ref[0];

		/* write out prm format 				*/
		if (input_flag == 0)
			write_prm_baseline(r[ii]);

		/* write out in x,y format bperp baseline only 		*/
		if (input_flag == 1)
			write_bperp(r[ii], filename[ii]);
	}
}
/*---------------------------------------------------------------------------*/
void read_input_file(char *inputfilename, int nfiles, char **filename) {
	int i;
	FILE *inputfile;

	if ((inputfile = fopen(inputfilename, "r")) == NULL)
		die("Can't open ", inputfilename);

	for (i = 0; i < nfiles; i++)
		fscanf(inputfile, " %s ", filename[i]);

	fclose(inputfile);
}
/*---------------------------------------------------------------------------*/
void parse_command_line(char **argv, int *nfiles, int *input_flag) {
	char tmp[132];
	FILE *inputfile;

	*nfiles = 0;

	if (strncmp(argv[1], "-input", 6) != 0) {

		fprintf(stderr, "using command line\n");
		*nfiles = 2;
	}
	else {

		fprintf(stderr, "using input file \n");
		*input_flag = 1;

		if ((inputfile = fopen(argv[2], "r")) == NULL)
			die("Can't open ", argv[2]);

		/* count the number of files in inputfile */
		while (fscanf(inputfile, " %s ", tmp) != EOF)
			(*nfiles)++;

		fclose(inputfile);
	}
}
/*---------------------------------------------------------------------------*/
void write_bperp(struct PRM r1, char *string) {
	FILE *GMTscript;
	float year, dyear;

	GMTscript = fopen("GMTscript", "w");

	year = floor(r1.SC_clock_start / 1000.0);
	dyear = (r1.SC_clock_start - 1000.0 * year) / 365.0;
	year = year + dyear;

	/* write date, baseline */
	fprintf(stdout, " %f %f %s\n", year, r1.bperp, string);

	/*
	        fprintf(GMTscript,"psxy Bperp.dat -R%f/%f/%f/%f -JX8 -P >
	   Bperp.ps\n");
	*/

	fclose(GMTscript);
}
/*---------------------------------------------------------------------------*/
void get_sign(struct PRM r, double x11, double y11, double x21, double y21, int *sign) {
	double rlnref, rlnrep;

	rlnref = atan2(y11, x11);
	rlnrep = atan2(y21, x21);

	*sign = 1.0;

	if (strncmp(r.orbdir, "D", 1) == 0)
		*sign = -1 * (*sign);

	if (rlnrep < rlnref)
		*sign = -1 * (*sign);
}
/*---------------------------------------------------------------------------*/
void write_prm_baseline(struct PRM rep) {
	printf("SC_vel			= %f \n", rep.vel);
	printf("SC_height		= %f \n", rep.ht);
	printf("SC_height_start		= %f \n", rep.ht_start);
	printf("SC_height_end		= %f \n", rep.ht_end);
	printf("earth_radius		= %f \n", rep.RE);
	printf("rshift                  = %d \n", rep.rshift);
	printf("sub_int_r               = 0.0 \n");
	printf("ashift                  = %d\n", rep.ashift);
	printf("sub_int_a               = 0.0 \n");
	printf("B_parallel              = %f \n", rep.bpara);
	printf("B_perpendicular         = %f \n", rep.bperp);
	printf("baseline_start          = %f \n", rep.baseline_start);
	printf("baseline_center          = %f \n", rep.baseline_center);
	printf("baseline_end            = %f \n", rep.baseline_end);
	printf("alpha_start             = %f \n", rep.alpha_start);
	printf("alpha_center             = %f \n", rep.alpha_center);
	printf("alpha_end               = %f \n", rep.alpha_end);
}
/*---------------------------------------------------------------------------*/
void find_parallel_perp_baseline(struct PRM ref, struct PRM rep, double dr, double *bpara, double *bperp) {
	double rc, ra, rad, rlook, far_range, arg1, arg2;

	rad = M_PI / 180.0;

	/* this is not ellipsoid axis */

	/* use reference ?? */
	rc = ref.RE + ref.ht;
	ra = ref.RE;

	far_range = rep.near_range + dr * rep.num_rng_bins;

	/* calculate the look angle 1/2 way between the near and far range */

	arg1 = (rep.near_range * rep.near_range + rc * rc - ra * ra) / (2. * rep.near_range * rc);
	arg2 = (far_range * far_range + rc * rc - ra * ra) / (2. * far_range * rc);
	rlook = acos((arg1 + arg2) / 2.0);

	/* add the incidence angle correction to get the incidence angle  */

	arg1 = (-rep.near_range * rep.near_range + rc * rc + ra * ra) / (2. * ra * rc);
	arg2 = (-far_range * far_range + rc * rc + ra * ra) / (2. * ra * rc);
	rlook = rlook + acos((arg1 + arg2) / 2.0);

	*bpara = rep.baseline_start * sin(rlook - rep.alpha_start * rad);
	*bperp = rep.baseline_start * cos(rlook - rep.alpha_start * rad);
}
/*---------------------------------------------------------------------------*/
double find_alpha_degrees(double bv, double bh) {
	double a, rad;

	rad = M_PI / 180.0;

	a = atan2(bv, bh);
	a = a / rad;

	return (a);
}
/*---------------------------------------------------------------------------*/
double find_distance(double xs, double ys, double zs, double x, double y, double z) {
	double ds;
	double dx, dy, dz;

	dx = xs - x;
	dy = ys - y;
	dz = zs - z;

	ds = sqrt(dx * dx + dy * dy + dz * dz);

	return (ds);
}
/*---------------------------------------------------------------------------*/
void endpoint_distance(int k, double ds, double xs, double ys, double zs, double *b, double *x, double *y, double *z, int *m) {
	*b = ds;
	*x = xs;
	*y = ys;
	*z = zs;
	*m = k;
}
/*---------------------------------------------------------------------------*/
void find_unit_vectors(double x, double y, double z, double *ru, double *xu, double *yu, double *zu) {
	*ru = sqrt(x * x + y * y + z * z);
	*xu = x / (*ru);
	*yu = y / (*ru);
	*zu = z / (*ru);
}
/*---------------------------------------------------------------------------*/
