GenomeTools - manual page for GT-READJOINER-OVERLAP(1)

## NAME

gt-readjoiner-overlap - Compute suffix prefix matches from encoded sequence.

## SYNOPSIS

gt readjoiner overlap [option …] [file]

## DESCRIPTION

-readset [string]

  specify the readset name (default: undefined)

-l [value]

  specify the minimum SPM length (default: 0)

-parts [value]

  specify the number of parts (default: 0)

-memlimit [string]

  specify maximal amount of memory to be used during index construction (in bytes, the keywords MB and GB are allowed) (default: undefined)

-v [yes|no]

  be verbose (default: no)

-q [yes|no]

  suppress standard output messages (default: no)

-help

  display help and exit

-version

  display version information and exit

## REPORTING BUGS

Report bugs to https://github.com/genometools/genometools/issues.