GenomeTools - manual page for GT-TALLYMER-OCCRATIO(1)

## NAME

gt-tallymer-occratio - Compute occurrence ratio for a set of sequences represented by an enhanced suffix array.

## SYNOPSIS

gt tallymer occratio [options] -esa suffixerator-index [options]

## DESCRIPTION

-esa [string]

  specify suffixerator-index (mandatory option) (default: undefined)

-minmersize [value]

  specify minimum mer size for which to compute the occurrence distribution (default: 0)

-maxmersize [value]

  specify maximum mer size for which to compute the occurrence distribution (default: 0)

-step [value]

  specify step size when specifying mer sizes (default: 1)

-mersizes

  specify mer sizes as non-empty sequence of non decreasing positive integers

-output

  use combination of the following keywords: unique nonunique nonuniquemulti relative total to specify kind of output

-scan [yes|no]

  read suffixerator-index sequentially instead of mapping it to memory (default: no)

-v [yes|no]

  be verbose (default: no)

-help

  display help and exit

-version

  display version information and exit

## REPORTING BUGS

Report bugs to <kurtz@zbh.uni-hamburg.de>.