Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: toppic
Upstream-Contact: Xiaowen Liu <xwliu@iupui.edu>
Source: https://github.com/toppic-suite/toppic-suite
Files-Excluded: ext/htslib
                ext/pwiz
                ext/boost
                ext/xml2json/rapidjson
                ext/xml2json/rapidxml
                .gitmodules
                doc/wiki
                resources/topmsv
Comment:
 .
 The wiki directory was removed because the files it contains are in
 the docx format and they pertain better to a website.
 .
 The resources/topmsv were removed because this visualization software is
 written in JavaScript and it is not packageable in Debian. Removing this
 part of the software source tree does not reduce the features of top-down
 proteomics of the toppic package.


Files: *
Copyright: 2014 - 2023, The Trustees of Indiana University
License: Apache-2.0
 Apache License Version 2.0
 .
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.
 You may obtain a copy of the License at
 .
 http://www.apache.org/licenses/LICENSE-2.0
 .
 Unless required by applicable law or agreed to in writing, software
 distributed under the License is distributed on an "AS IS" BASIS,
 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 See the License for the specific language governing permissions and
 limitations under the License.
 .
 On Debian systems you can read the full text of the Apache 2.0
 LICENSE at /usr/share/common-licenses/Apache-2.0.License: Apache-2.0


License: Boost1.0
 Boost Software License - Version 1.0 - August 17th, 2003
 .
 Permission is hereby granted, free of charge, to any person or organization
 obtaining a copy of the software and accompanying documentation covered by
 this license (the "Software") to use, reproduce, display, distribute,
 execute, and transmit the Software, and to prepare derivative works of the
 Software, and to permit third-parties to whom the Software is furnished to
 do so, all subject to the following:
 .
 The copyright notices in the Software and this entire statement, including
 the above license grant, this restriction and the following disclaimer,
 must be included in all copies of the Software, in whole or in part, and
 all derivative works of the Software, unless such copies or derivative
 works are solely in the form of machine-executable object code generated by
 a source language processor.
 .
 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT
 SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE
 FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE,
 ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
 DEALINGS IN THE SOFTWARE.


License: MIT
 Permission is hereby granted, free of charge, to any person obtaining a copy of
 this software and associated documentation files (the "Software"), to deal in
 the Software without restriction, including without limitation the rights to
 use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
 the Software, and to permit persons to whom the Software is furnished to do so,
 subject to the following conditions:
 .
 The above copyright notice and this permission notice shall be included in all
 copies or substantial portions of the Software.
 .
 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
 FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
 COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
 IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
 CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
 Licensed under the MIT License (the "License"); you may not use this file except
 in compliance with the License. You may obtain a copy of the License at .
 http://opensource.org/licenses/MIT .  Unless required by applicable law or
 agreed to in writing, software distributed under the License is distributed on
 an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express
 or implied. See the License for the specific language governing permissions and
 limitations under the License.


Files: ext/xml2json/xml2json.hpp
Copyright: 2013 Alan Zhuang (Cheedoong)   Tencent, Inc.
 2015 Alan Zhuang (Cheedoong)
License: MIT


Files: src/test/catch.hpp
Copyright: 2019 Two Blue Cubes Ltd
License: Boost1.0


Files: debian/*
Copyright: 2020-2025 Filippo Rusconi <lopippo@debian.org>
License: GPL-3+
 This package is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; either version 3 of the License, or
 (at your option) any later version.
 .
 This package is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 .
 You should have received a copy of the GNU General Public License
 along with this program. If not, see <https://www.gnu.org/licenses/>
 .
 On Debian systems, the complete text of the GNU General
 Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".

