Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: io_lib
Upstream-Contact: James Bonfield <jkb@sanger.ac.uk>
Source: https://sourceforge.net/projects/staden/files/io_lib/
Files-Excluded: */varint

Files: *
Copyright: 1994-2017 Medical Research Council
                     Genome Research Ltd (GRL)
License: GRL or MRC
Upstream-Comment: Newer files and changes are copyright Genome Research Ltd
 using the following compatible BSD licence. Disentangling which is which is
 somewhat tricky, but it's sufficient to say that work in the CVS/SVN tree from
 August 2002 will be bound by the GRL licence instead.

Files: io_lib/binning.h
Copyright: © 2014 Genome Research Ltd.
License: GRL-new

Files: io_lib/open_trace_file.c
Copyright: © 2001-2005 454 Life Sciences Corporation
License: GRL or MRC, and 454
Comment:
 This file contains some source code owned by 454 Life Sciences Corporation.

Files: io_lib/sff.c
Copyright: © Genome Research Limited (GRL)
           © 2001-2005 454 Life Sciences Corporation.
License: GRL and 454
Comment:
 This file contains some extracts from a file owened by the 454 Life Sciences Corporation.

Files: io_lib/md5.*
Copyright: see License
License: says-public-domain
 This is an OpenSSL-compatible implementation of the RSA Data Security, Inc.
 MD5 Message-Digest Algorithm (RFC 1321).
 .
 Homepage:
 http://openwall.info/wiki/people/solar/software/public-domain-source-code/md5
 .
 Author:
 Alexander Peslyak, better known as Solar Designer <solar at openwall.com>
 .
 This software was written by Alexander Peslyak in 2001.  No copyright is
 claimed, and the software is hereby placed in the public domain.
 In case this attempt to disclaim copyright and place the software in the
 public domain is deemed null and void, then the software is
 Copyright (c) 2001 Alexander Peslyak and it is hereby released to the
 general public under the following terms:
 .
 Redistribution and use in source and binary forms, with or without
 modification, are permitted.
 .
 There's ABSOLUTELY NO WARRANTY, express or implied.
 .
 (This is a heavily cut-down "BSD license".)
 .
 This differs from Colin Plumb's older public domain implementation in that
 no exactly 32-bit integer data type is required (any 32-bit or wider
 unsigned integer data type will do), there's no compile-time endianness
 configuration, and the function prototypes match OpenSSL's.  No code from
 Colin Plumb's implementation has been reused; this comment merely compares
 the properties of the two independent implementations.
 .
 The primary goals of this implementation are portability and ease of use.
 It is meant to be fast, but not as fast as possible.  Some known
 optimizations are not included to reduce source code size and avoid
 compile-time configuration.

Files: debian/*
Copyright: 2008–2015 Charles Plessy <plessy@debian.org>
           2015-2017 Andreas Tille <tille@debian.org>
License: PD
 Please treat these files as if they were in your country’s public domain.

License: 454
 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
 EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
 MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
 .
 IN NO EVENT SHALL LICENSOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
 FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE.
 .
 Permission to use, copy, modify and distribute this software and its
 documentation for any purpose is hereby granted without fee, provided
 that this copyright and notice appears in all copies.

License: GRL
 Copyright (c), Genome Research Ltd (GRL).
 All rights reserved.
 .
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions
 are met:
 .
     * Redistributions of source code must retain the above copyright
       notice, this list of conditions and the following disclaimer.
 .
     * Redistributions in binary form must reproduce the above
       copyright notice, this list of conditions and the following
       disclaimer in the documentation and/or other materials
       provided with the distribution.
 .
     * Neither the name of the Genome Research Limited nor the
       names of its contributors may be used to endorse or promote
       products derived from this software without specific prior
       written permission.
 .
 THIS SOFTWARE IS PROVIDED BY GRL ``AS IS'' AND ANY EXPRESS OR
 IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
 WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
 ARE DISCLAIMED.  IN NO EVENT SHALL GRL BE LIABLE FOR ANY DIRECT,
 INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
 (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
 STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
 ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
 OF THE POSSIBILITY OF SUCH DAMAGE.

License: GRL-new
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions are met:
 .
    1. Redistributions of source code must retain the above copyright notice,
       this list of conditions and the following disclaimer.
 .
    2. Redistributions in binary form must reproduce the above
       copyright notice, this list of conditions and the following
       disclaimer in the documentation and/or other materials provided
       with the distribution.
 .
    3. Neither the names Genome Research Ltd and Wellcome Trust Sanger
    Institute nor the names of its contributors may be used to endorse
    or promote products derived from this software without specific
    prior written permission.
 .
 THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS
 IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
 TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
 PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH
 LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
 LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
 DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
 THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

License: MRC
 Copyright (c) Medical Research Council 1994. All rights reserved.
 .
 Permission to use, copy, modify and distribute this software and its
 documentation for any purpose is hereby granted without fee, provided that
 this copyright and notice appears in all copies.
 .
 This file was written by James Bonfield, Simon Dear, Rodger Staden,
 as part of the Staden Package at the MRC Laboratory of Molecular
 Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom.
 .
 MRC disclaims all warranties with regard to this software.

