staden-io-lib (1.14.14+dfsg-2) unstable; urgency=medium

  * Work around missing declaration of encode_names in libhtscodecs2
    version 1.3.0
    Closes: #1022282
  * Standards-Version: 4.6.1 (routine-update)
  * Set upstream metadata fields: Archive.

 -- Andreas Tille <tille@debian.org>  Fri, 28 Oct 2022 07:19:58 +0200

staden-io-lib (1.14.14+dfsg-1) unstable; urgency=medium

  * Fix watchfile to detect new versions on github
  * New upstream version
  * Standards-Version: 4.6.0 (routine-update)
  * Remove trailing whitespace in debian/changelog (routine-update)
  * Build-Depends: libbz2-dev, liblzma-dev
  * Exclude compiled executable htscodecs/tests/varint

 -- Andreas Tille <tille@debian.org>  Wed, 06 Oct 2021 21:49:12 +0200

staden-io-lib (1.14.13-4) unstable; urgency=medium

  * Fix build for 32 bit systems courtesy a patch from upstream. Updated
    symbols file to match.
  * REALLY install io_lib_config.h to /usr/include/io_lib/

 -- Michael R. Crusoe <crusoe@debian.org>  Tue, 28 Jul 2020 12:42:20 +0200

staden-io-lib (1.14.13-3) unstable; urgency=medium

  * Install io_lib_config.h to /usr/include/io_lib/
  * Add new symbols to debian/libstaden-read14.symbols

 -- Michael R. Crusoe <crusoe@debian.org>  Sun, 19 Jul 2020 17:25:41 +0200

staden-io-lib (1.14.13-2) unstable; urgency=medium

  * Don't run dh_missing in for arch independent builds.

 -- Michael R. Crusoe <crusoe@debian.org>  Thu, 16 Jul 2020 13:49:13 +0200

staden-io-lib (1.14.13-1) unstable; urgency=medium

  * New upstream version
  * debhelper-compat 13 (routine-update)
  * s390x patch removed, fixed upstream.
  * Other patches refreshed.
  * Remove trailing whitespace in debian/changelog (routine-update)
  * Add salsa-ci file (routine-update)

 -- Michael R. Crusoe <crusoe@debian.org>  Thu, 16 Jul 2020 12:49:13 +0200

staden-io-lib (1.14.12-2) unstable; urgency=medium

  * File more spelling typos
  * Install upstream's manual pages
  * include symbols in the package
  * debian/control: fix typo in the package descriptions
  * debian/rules: add hack to autoconf not forget MMAP with cross
    building
  * debian/patches/s390x: applied patch from upstream to fix big endian builds
  * debian/patches/usedebianhtscodecs.patch: added DEP-3 patch metadata
  * debian/upstream/metadata: added repository & bug entries

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Thu, 21 May 2020 13:13:22 +0200

staden-io-lib (1.14.12-1) unstable; urgency=medium

  * Team upload.

  [ Michael Crusoe ]
  * New upstream version
  * Standards-Version: 4.5.0 (routine-update)
  * debhelper-compat 12 (routine-update)
  * Remove many patches incorporated upstream
  * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update)

  [ Steffen Moeller ]
  * Fixed FTBFS - added dep on libhtscodecs-dev now distributed
    as a git submodule of staden-io-lib.
  * Rules-Requires-Root: no
  * Adjusted library package name to updated soversion 14
  * Added extra argument to d-shlibmove to override search for
    unversioned libhtscodecs-dev package

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 10 Feb 2020 10:51:13 +0100

staden-io-lib (1.14.11-6) unstable; urgency=medium

  * Switch to -O0 on armhf, mips. Closes: #916262
  * Standards-Version: 4.3.0
  * debian/control: mark staden-io-lib-examples as Multi-Arch: foreign
  * changelog & debian/patches/spelling: typo fix (independent)

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 02 Jan 2019 03:08:23 -0800

staden-io-lib (1.14.11-5) unstable; urgency=medium

  * Fix hash table HASH_INT_KEYS on 32-bit platforms (thanks to
    upstream Rob Davies)
  * Do not attempt to run test suite for architecture independent
    build.
  * Use serial tests

 -- Andreas Tille <tille@debian.org>  Fri, 07 Dec 2018 12:55:44 +0100

staden-io-lib (1.14.11-4) unstable; urgency=medium

  * Apply three patches from upstream to fix bugs on several
    architectures (thanks a lot for the support by James Bonfield)
    Closes: #915450, #915459, #915460

 -- Andreas Tille <tille@debian.org>  Fri, 07 Dec 2018 07:56:28 +0100

staden-io-lib (1.14.11-3) unstable; urgency=medium

  * Remove bashism in test script
    Closes: #915460

 -- Andreas Tille <tille@debian.org>  Tue, 04 Dec 2018 19:35:00 +0100

staden-io-lib (1.14.11-2) unstable; urgency=medium

  * Fix build on non-x86 architectures (thanks to James Bonfield
    <jkb@sanger.ac.uk>)
    Closes: #912451
  * Remove trailing whitespace in debian/changelog
  * Remove trailing whitespace in debian/copyright

 -- Andreas Tille <tille@debian.org>  Sun, 02 Dec 2018 08:50:21 +0100

staden-io-lib (1.14.11-1) unstable; urgency=medium

  * New upstream version featuring SOVERSION bump
  * Fix installation of docs
    Closes: #912272
  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.1

 -- Andreas Tille <tille@debian.org>  Mon, 29 Oct 2018 20:24:24 +0100

staden-io-lib (1.14.9-4) unstable; urgency=medium

  * Standards-Version: 4.1.2
  * Really fix fseeko()
    Closes: #876840

 -- Andreas Tille <tille@debian.org>  Fri, 08 Dec 2017 08:32:32 +0100

staden-io-lib (1.14.9-3) unstable; urgency=medium

  * Fix FTBFS on big endian: error: invalid operands to binary
    (Thanks to James Bonfield and Christian Seiler)
    Closes: #876839
  * Upstream moved to Github
  * Attempt to fix FTBFS on non-i386 32bit for fseeko()
    Related to bug #876840

 -- Andreas Tille <tille@debian.org>  Thu, 28 Sep 2017 16:28:30 +0200

staden-io-lib (1.14.9-2) unstable; urgency=medium

  * Update copyright
  * Disable parallel build which was forced by debhelper 10
    Closes: #876699

 -- Andreas Tille <tille@debian.org>  Mon, 25 Sep 2017 08:56:42 +0200

staden-io-lib (1.14.9-1) unstable; urgency=medium

  * New upstream version
  * Move packaging from SVN to Git
  * debhelper 10
  * Standards-Version: 4.1.0 (no changes needed)

 -- Andreas Tille <tille@debian.org>  Tue, 12 Sep 2017 15:35:36 +0200

staden-io-lib (1.14.8-2) unstable; urgency=medium

  * make sure io_lib-config --libs will not return -pie (see #825461)

 -- Andreas Tille <tille@debian.org>  Fri, 27 May 2016 16:07:11 +0200

staden-io-lib (1.14.8-1) unstable; urgency=medium

  * New upstream version
  * cme fix dpkg-control
  * Better hardening

 -- Andreas Tille <tille@debian.org>  Thu, 19 May 2016 00:38:22 +0200

staden-io-lib (1.14.7-1) unstable; urgency=medium

  * New upstream version
  * Add lintian-overrides for scripts in example package
  * Assemble debian created manpages in debian/man1
  * Add new manpage
  * cme fix dpkg-control

 -- Andreas Tille <tille@debian.org>  Sun, 21 Feb 2016 09:14:45 +0100

staden-io-lib (1.14.6-2) unstable; urgency=medium

  * Enable separate building of arch independet packages
    Closes: #806112
  * Adapt to latest d-shlibs

 -- Andreas Tille <tille@debian.org>  Tue, 24 Nov 2015 20:15:14 +0100

staden-io-lib (1.14.6-1) unstable; urgency=medium

  * New upstream version
    Closes: #793514

 -- Andreas Tille <tille@debian.org>  Sun, 08 Nov 2015 18:50:19 +0100

staden-io-lib (1.14.2-1) unstable; urgency=medium

  [ Charles Plessy ]
  * Removed debian/libstaden-read1.symbols_old (that is what VCSes
    are for).

  [ Andreas Tille ]
  * New upstream version
  * New soname - so change library package name

 -- Andreas Tille <tille@debian.org>  Tue, 22 Sep 2015 20:27:29 +0200

staden-io-lib (1.14.0-1) unstable; urgency=medium

  * New upstream version
  * Deactivated libstaden-read1.symbols for the moment by renaming
    it to libstaden-read1.symbols_old (feel free to maintain this file
    but in this form the package does not build)
  * d/copyright: remove paragraph about not existing file

 -- Andreas Tille <tille@debian.org>  Mon, 27 Jul 2015 12:46:23 +0200

staden-io-lib (1.13.10-1) unstable; urgency=medium

  [ Andreas Tille ]
  * New upstream version
  * cme fix dpkg-control

  [ Charles Plessy ]
  * Multi-Arch: same.
  * Unfuzzy debian/patches/pathmax.patch.
  * Update symbols file.

 -- Andreas Tille <tille@debian.org>  Sun, 05 Jul 2015 16:34:13 +0200

staden-io-lib (1.13.7-1) unstable; urgency=medium

  * New upstream release.
  * Removed debian/patches/fix-bam-read.patch, applied upstream.
  * debian/libstaden-read1.symbols: updated.  Some symbols are missing but
    it is in area of code that are considered beta (in my understanding).

 -- Charles Plessy <plessy@debian.org>  Fri, 20 Jun 2014 08:04:00 +0900

staden-io-lib (1.13.5-3) unstable; urgency=medium

  * debian/rules: fix permissions in arch=all package only when
    it is really built
    Closes: #745692

 -- Andreas Tille <tille@debian.org>  Thu, 24 Apr 2014 08:16:30 +0200

staden-io-lib (1.13.5-2) unstable; urgency=medium

  * use dh-autoreconf
    Closes: 744664
  * Add autopkgtest using new staden-io-lib-examples package

 -- Andreas Tille <tille@debian.org>  Mon, 14 Apr 2014 13:08:48 +0200

staden-io-lib (1.13.5-1.1) unstable; urgency=medium

  * Non-maintainer upload.
  * Fix io_lib/bam.c read
    Patch by Aleksandar Zlicic
    Add fix-bam-read.patch
    Closes: #736565

 -- Anibal Monsalve Salazar <anibal@debian.org>  Tue, 01 Apr 2014 04:19:52 +0100

staden-io-lib (1.13.5-1) unstable; urgency=medium

  * New upstream release.
  * debian/libstaden-read1.symbols: updated symbols.
  * debian/patches/pathmax.patch: refreshed.
  * debian/patches/fix_bufferoverflow.patch: removed (applied upstream).

 -- Charles Plessy <plessy@debian.org>  Sat, 15 Mar 2014 12:05:00 +0900

staden-io-lib (1.13.3-2) unstable; urgency=medium

  * debian/patches/fix_bufferoverflow.patch: Fix buffer overflow
    Thanks to James Bonfield <jkb@sanger.ac.uk> (upstream) for the patch.
    Closes: #729276

 -- Andreas Tille <tille@debian.org>  Thu, 12 Dec 2013 13:42:21 +0100

staden-io-lib (1.13.3-1) unstable; urgency=low

  * New upstream release.  Closes: #715753, #715877, #715878, #715879, #715953.

  [ Adam Conrad ]
  * Use dh_autotools-dev to update config.{sub,guess} for new ports.

  [ Charles Plessy ]
  * Updated symbols file: some symbols have been removed, but they relate
    to obsolete code that is not expected to be used.
  * Conforms to Policy 3.9.5.

 -- Charles Plessy <plessy@debian.org>  Sat, 30 Nov 2013 18:11:11 +0900

staden-io-lib (1.13.2-3) unstable; urgency=low

  * debian/patches: add patch to build on hurd_i386
  * no need to remove package from mips anymore (Closes: #726875)

 -- Thorsten Alteholz <debian@alteholz.de>  Mon, 21 Oct 2013 18:10:59 +0200

staden-io-lib (1.13.2-2) unstable; urgency=low

  * Restore and update symbols file debian/libstaden-read1.symbols.

 -- Charles Plessy <plessy@debian.org>  Sat, 10 Aug 2013 12:10:59 +0900

staden-io-lib (1.13.2-1) unstable; urgency=low

  [ Charles Plessy ]
  * New upstream release (Closes: #710227).
  * Use Debhelper 9.
  * Removed obsolete DM-Upload-Allowed field.
  * Machine-readable Debian copyright file.
  * Normalised debian/control with config-model-edit.
  * New symbols for libstaden-read1.
  * Search for libraries in tmp/usr/lib/x86_64-linux-gnu/.
  * Removed Breaks and Replaces (staden-io-lib-utils) satisfied in oldstable.
  * Normalised VCS URLs following Lintian's standard.

  [ Andreas Tille ]
  * debian/source/format: 3.0 (quilt)
  * debian/control: Build-Depends libcurl4-gnutls-dev
    Closes: #710243
  * debian/libstaden-read1.symbols: Deleted because it simply breaks build.
  * debian/rules: Make use of d-shlibs which should help closing bug
    #710225 because it raises a flag if there is a new ABI
  * provide some help2man created manpages

 -- Andreas Tille <tille@debian.org>  Wed, 07 Aug 2013 14:31:36 +0200

staden-io-lib (1.12.4-1) unstable; urgency=low

  * New upstream release, with changes on endianness detection
    (closes: #579239).
  * Build on all architectures, (debian/control).
  * Added library symbols file (debian/libstaden-read1.symbols).
  * Incremented Standards-Version to reflect conformance with Policy 3.9.1
    (debian/control, no changes needed).
  * Moved io_lib-config from staden-io-lib-utils to libstaden-read-dev
    (debian/rules, debian/control).

 -- Charles Plessy <plessy@debian.org>  Tue, 27 Jul 2010 21:07:57 +0900

staden-io-lib (1.12.2-2) unstable; urgency=low

  * Restrict staden-io-lib to i386 and amd64 platforms, which are the
    only ones where it is known to work and be used (debian/control).
  * Provide a patch for helping people interested in building this
    package on other architectures (debian/endianness.patch).
  * Incremented Standards-Version to reflect conformance with Policy 3.8.4
    (debian/control, no changes needed).

 -- Charles Plessy <plessy@debian.org>  Sat, 22 May 2010 22:50:35 +0900

staden-io-lib (1.12.2-1) unstable; urgency=low

  * New upstream release: extra options in srf2fastq and API changes in
    HashTable code.
  * Removed the libtool ‘.la’ library (debian/staden-read-dev.install).
  * Incremented Standards-Version to reflect conformance with Policy 3.8.3
    (no changes needed).

 -- Charles Plessy <plessy@debian.org>  Sun, 17 Jan 2010 22:09:42 +0900

staden-io-lib (1.12.1-1) unstable; urgency=low

  * Initial release (Closes: #530753)

 -- Charles Plessy <plessy@debian.org>  Mon, 10 Aug 2009 23:32:59 +0900
