Date: 2024-09-25T09:34:45+00:00

Actual source code: fnbasic.c
slepc-3.21.2 2024-09-25
Report Typos and Errors

      1: /*
      2:    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
      3:    SLEPc - Scalable Library for Eigenvalue Problem Computations
      4:    Copyright (c) 2002-, Universitat Politecnica de Valencia, Spain

      6:    This file is part of SLEPc.
      7:    SLEPc is distributed under a 2-clause BSD license (see LICENSE).
      8:    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
      9: */
     10: /*
     11:    Basic FN routines
     12: */

     14: #include <slepc/private/fnimpl.h>
     15: #include <slepcblaslapack.h>

     17: PetscFunctionList FNList = NULL;
     18: PetscBool         FNRegisterAllCalled = PETSC_FALSE;
     19: PetscClassId      FN_CLASSID = 0;
     20: PetscLogEvent     FN_Evaluate = 0;
     21: static PetscBool  FNPackageInitialized = PETSC_FALSE;

     23: const char *FNParallelTypes[] = {"REDUNDANT","SYNCHRONIZED","FNParallelType","FN_PARALLEL_",NULL};

     25: /*@C
     26:    FNFinalizePackage - This function destroys everything in the Slepc interface
     27:    to the FN package. It is called from SlepcFinalize().

     29:    Level: developer

     31: .seealso: SlepcFinalize()
     32: @*/
     33: PetscErrorCode FNFinalizePackage(void)
     34: {
     35:   PetscFunctionBegin;
     36:   PetscCall(PetscFunctionListDestroy(&FNList));
     37:   FNPackageInitialized = PETSC_FALSE;
     38:   FNRegisterAllCalled  = PETSC_FALSE;
     39:   PetscFunctionReturn(PETSC_SUCCESS);
     40: }

     42: /*@C
     43:   FNInitializePackage - This function initializes everything in the FN package.
     44:   It is called from PetscDLLibraryRegister() when using dynamic libraries, and
     45:   on the first call to FNCreate() when using static libraries.

     47:   Level: developer

     49: .seealso: SlepcInitialize()
     50: @*/
     51: PetscErrorCode FNInitializePackage(void)
     52: {
     53:   char           logList[256];
     54:   PetscBool      opt,pkg;
     55:   PetscClassId   classids[1];

     57:   PetscFunctionBegin;
     58:   if (FNPackageInitialized) PetscFunctionReturn(PETSC_SUCCESS);
     59:   FNPackageInitialized = PETSC_TRUE;
     60:   /* Register Classes */
     61:   PetscCall(PetscClassIdRegister("Math Function",&FN_CLASSID));
     62:   /* Register Constructors */
     63:   PetscCall(FNRegisterAll());
     64:   /* Register Events */
     65:   PetscCall(PetscLogEventRegister("FNEvaluate",FN_CLASSID,&FN_Evaluate));
     66:   /* Process Info */
     67:   classids[0] = FN_CLASSID;
     68:   PetscCall(PetscInfoProcessClass("fn",1,&classids[0]));
     69:   /* Process summary exclusions */
     70:   PetscCall(PetscOptionsGetString(NULL,NULL,"-log_exclude",logList,sizeof(logList),&opt));
     71:   if (opt) {
     72:     PetscCall(PetscStrInList("fn",logList,',',&pkg));
     73:     if (pkg) PetscCall(PetscLogEventDeactivateClass(FN_CLASSID));
     74:   }
     75:   /* Register package finalizer */
     76:   PetscCall(PetscRegisterFinalize(FNFinalizePackage));
     77:   PetscFunctionReturn(PETSC_SUCCESS);
     78: }

     80: /*@
     81:    FNCreate - Creates an FN context.

     83:    Collective

     85:    Input Parameter:
     86: .  comm - MPI communicator

     88:    Output Parameter:
     89: .  newfn - location to put the FN context

     91:    Level: beginner

     93: .seealso: FNDestroy(), FN
     94: @*/
     95: PetscErrorCode FNCreate(MPI_Comm comm,FN *newfn)
     96: {
     97:   FN             fn;

     99:   PetscFunctionBegin;
    100:   PetscAssertPointer(newfn,2);
    101:   *newfn = NULL;
    102:   PetscCall(FNInitializePackage());
    103:   PetscCall(SlepcHeaderCreate(fn,FN_CLASSID,"FN","Math Function","FN",comm,FNDestroy,FNView));

    105:   fn->alpha    = 1.0;
    106:   fn->beta     = 1.0;
    107:   fn->method   = 0;

    109:   fn->nw       = 0;
    110:   fn->cw       = 0;
    111:   fn->data     = NULL;

    113:   *newfn = fn;
    114:   PetscFunctionReturn(PETSC_SUCCESS);
    115: }

    117: /*@C
    118:    FNSetOptionsPrefix - Sets the prefix used for searching for all
    119:    FN options in the database.

    121:    Logically Collective

    123:    Input Parameters:
    124: +  fn - the math function context
    125: -  prefix - the prefix string to prepend to all FN option requests

    127:    Notes:
    128:    A hyphen (-) must NOT be given at the beginning of the prefix name.
    129:    The first character of all runtime options is AUTOMATICALLY the
    130:    hyphen.

    132:    Level: advanced

    134: .seealso: FNAppendOptionsPrefix()
    135: @*/
    136: PetscErrorCode FNSetOptionsPrefix(FN fn,const char *prefix)
    137: {
    138:   PetscFunctionBegin;
    140:   PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fn,prefix));
    141:   PetscFunctionReturn(PETSC_SUCCESS);
    142: }

    144: /*@C
    145:    FNAppendOptionsPrefix - Appends to the prefix used for searching for all
    146:    FN options in the database.

    148:    Logically Collective

    150:    Input Parameters:
    151: +  fn - the math function context
    152: -  prefix - the prefix string to prepend to all FN option requests

    154:    Notes:
    155:    A hyphen (-) must NOT be given at the beginning of the prefix name.
    156:    The first character of all runtime options is AUTOMATICALLY the hyphen.

    158:    Level: advanced

    160: .seealso: FNSetOptionsPrefix()
    161: @*/
    162: PetscErrorCode FNAppendOptionsPrefix(FN fn,const char *prefix)
    163: {
    164:   PetscFunctionBegin;
    166:   PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)fn,prefix));
    167:   PetscFunctionReturn(PETSC_SUCCESS);
    168: }

    170: /*@C
    171:    FNGetOptionsPrefix - Gets the prefix used for searching for all
    172:    FN options in the database.

    174:    Not Collective

    176:    Input Parameters:
    177: .  fn - the math function context

    179:    Output Parameters:
    180: .  prefix - pointer to the prefix string used is returned

    182:    Note:
    183:    On the Fortran side, the user should pass in a string 'prefix' of
    184:    sufficient length to hold the prefix.

    186:    Level: advanced

    188: .seealso: FNSetOptionsPrefix(), FNAppendOptionsPrefix()
    189: @*/
    190: PetscErrorCode FNGetOptionsPrefix(FN fn,const char *prefix[])
    191: {
    192:   PetscFunctionBegin;
    194:   PetscAssertPointer(prefix,2);
    195:   PetscCall(PetscObjectGetOptionsPrefix((PetscObject)fn,prefix));
    196:   PetscFunctionReturn(PETSC_SUCCESS);
    197: }

    199: /*@C
    200:    FNSetType - Selects the type for the FN object.

    202:    Logically Collective

    204:    Input Parameters:
    205: +  fn   - the math function context
    206: -  type - a known type

    208:    Notes:
    209:    The default is FNRATIONAL, which includes polynomials as a particular
    210:    case as well as simple functions such as f(x)=x and f(x)=constant.

    212:    Level: intermediate

    214: .seealso: FNGetType()
    215: @*/
    216: PetscErrorCode FNSetType(FN fn,FNType type)
    217: {
    218:   PetscErrorCode (*r)(FN);
    219:   PetscBool      match;

    221:   PetscFunctionBegin;
    223:   PetscAssertPointer(type,2);

    225:   PetscCall(PetscObjectTypeCompare((PetscObject)fn,type,&match));
    226:   if (match) PetscFunctionReturn(PETSC_SUCCESS);

    228:   PetscCall(PetscFunctionListFind(FNList,type,&r));
    229:   PetscCheck(r,PetscObjectComm((PetscObject)fn),PETSC_ERR_ARG_UNKNOWN_TYPE,"Unable to find requested FN type %s",type);

    231:   PetscTryTypeMethod(fn,destroy);
    232:   PetscCall(PetscMemzero(fn->ops,sizeof(struct _FNOps)));

    234:   PetscCall(PetscObjectChangeTypeName((PetscObject)fn,type));
    235:   PetscCall((*r)(fn));
    236:   PetscFunctionReturn(PETSC_SUCCESS);
    237: }

    239: /*@C
    240:    FNGetType - Gets the FN type name (as a string) from the FN context.

    242:    Not Collective

    244:    Input Parameter:
    245: .  fn - the math function context

    247:    Output Parameter:
    248: .  type - name of the math function

    250:    Level: intermediate

    252: .seealso: FNSetType()
    253: @*/
    254: PetscErrorCode FNGetType(FN fn,FNType *type)
    255: {
    256:   PetscFunctionBegin;
    258:   PetscAssertPointer(type,2);
    259:   *type = ((PetscObject)fn)->type_name;
    260:   PetscFunctionReturn(PETSC_SUCCESS);
    261: }

    263: /*@
    264:    FNSetScale - Sets the scaling parameters that define the matematical function.

    266:    Logically Collective

    268:    Input Parameters:
    269: +  fn    - the math function context
    270: .  alpha - inner scaling (argument)
    271: -  beta  - outer scaling (result)

    273:    Notes:
    274:    Given a function f(x) specified by the FN type, the scaling parameters can
    275:    be used to realize the function beta*f(alpha*x). So when these values are given,
    276:    the procedure for function evaluation will first multiply the argument by alpha,
    277:    then evaluate the function itself, and finally scale the result by beta.
    278:    Likewise, these values are also considered when evaluating the derivative.

    280:    If you want to provide only one of the two scaling factors, set the other
    281:    one to 1.0.

    283:    Level: intermediate

    285: .seealso: FNGetScale(), FNEvaluateFunction()
    286: @*/
    287: PetscErrorCode FNSetScale(FN fn,PetscScalar alpha,PetscScalar beta)
    288: {
    289:   PetscFunctionBegin;
    293:   PetscCheck(PetscAbsScalar(alpha)!=0.0 && PetscAbsScalar(beta)!=0.0,PetscObjectComm((PetscObject)fn),PETSC_ERR_ARG_WRONG,"Scaling factors must be nonzero");
    294:   fn->alpha = alpha;
    295:   fn->beta  = beta;
    296:   PetscFunctionReturn(PETSC_SUCCESS);
    297: }

    299: /*@
    300:    FNGetScale - Gets the scaling parameters that define the matematical function.

    302:    Not Collective

    304:    Input Parameter:
    305: .  fn    - the math function context

    307:    Output Parameters:
    308: +  alpha - inner scaling (argument)
    309: -  beta  - outer scaling (result)

    311:    Level: intermediate

    313: .seealso: FNSetScale()
    314: @*/
    315: PetscErrorCode FNGetScale(FN fn,PetscScalar *alpha,PetscScalar *beta)
    316: {
    317:   PetscFunctionBegin;
    319:   if (alpha) *alpha = fn->alpha;
    320:   if (beta)  *beta  = fn->beta;
    321:   PetscFunctionReturn(PETSC_SUCCESS);
    322: }

    324: /*@
    325:    FNSetMethod - Selects the method to be used to evaluate functions of matrices.

    327:    Logically Collective

    329:    Input Parameters:
    330: +  fn   - the math function context
    331: -  meth - an index identifying the method

    333:    Options Database Key:
    334: .  -fn_method <meth> - Sets the method

    336:    Notes:
    337:    In some FN types there are more than one algorithms available for computing
    338:    matrix functions. In that case, this function allows choosing the wanted method.

    340:    If meth is currently set to 0 (the default) and the input argument A of
    341:    FNEvaluateFunctionMat() is a symmetric/Hermitian matrix, then the computation
    342:    is done via the eigendecomposition of A, rather than with the general algorithm.

    344:    Level: intermediate

    346: .seealso: FNGetMethod(), FNEvaluateFunctionMat()
    347: @*/
    348: PetscErrorCode FNSetMethod(FN fn,PetscInt meth)
    349: {
    350:   PetscFunctionBegin;
    353:   PetscCheck(meth>=0,PetscObjectComm((PetscObject)fn),PETSC_ERR_ARG_OUTOFRANGE,"The method must be a non-negative integer");
    354:   PetscCheck(meth<=FN_MAX_SOLVE,PetscObjectComm((PetscObject)fn),PETSC_ERR_ARG_OUTOFRANGE,"Too large value for the method");
    355:   fn->method = meth;
    356:   PetscFunctionReturn(PETSC_SUCCESS);
    357: }

    359: /*@
    360:    FNGetMethod - Gets the method currently used in the FN.

    362:    Not Collective

    364:    Input Parameter:
    365: .  fn - the math function context

    367:    Output Parameter:
    368: .  meth - identifier of the method

    370:    Level: intermediate

    372: .seealso: FNSetMethod()
    373: @*/
    374: PetscErrorCode FNGetMethod(FN fn,PetscInt *meth)
    375: {
    376:   PetscFunctionBegin;
    378:   PetscAssertPointer(meth,2);
    379:   *meth = fn->method;
    380:   PetscFunctionReturn(PETSC_SUCCESS);
    381: }

    383: /*@
    384:    FNSetParallel - Selects the mode of operation in parallel runs.

    386:    Logically Collective

    388:    Input Parameters:
    389: +  fn    - the math function context
    390: -  pmode - the parallel mode

    392:    Options Database Key:
    393: .  -fn_parallel <mode> - Sets the parallel mode, either 'redundant' or 'synchronized'

    395:    Notes:
    396:    This is relevant only when the function is evaluated on a matrix, with
    397:    either FNEvaluateFunctionMat() or FNEvaluateFunctionMatVec().

    399:    In the 'redundant' parallel mode, all processes will make the computation
    400:    redundantly, starting from the same data, and producing the same result.
    401:    This result may be slightly different in the different processes if using a
    402:    multithreaded BLAS library, which may cause issues in ill-conditioned problems.

    404:    In the 'synchronized' parallel mode, only the first MPI process performs the
    405:    computation and then the computed matrix is broadcast to the other
    406:    processes in the communicator. This communication is done automatically at
    407:    the end of FNEvaluateFunctionMat() or FNEvaluateFunctionMatVec().

    409:    Level: advanced

    411: .seealso: FNEvaluateFunctionMat() or FNEvaluateFunctionMatVec(), FNGetParallel()
    412: @*/
    413: PetscErrorCode FNSetParallel(FN fn,FNParallelType pmode)
    414: {
    415:   PetscFunctionBegin;
    418:   fn->pmode = pmode;
    419:   PetscFunctionReturn(PETSC_SUCCESS);
    420: }

    422: /*@
    423:    FNGetParallel - Gets the mode of operation in parallel runs.

    425:    Not Collective

    427:    Input Parameter:
    428: .  fn - the math function context

    430:    Output Parameter:
    431: .  pmode - the parallel mode

    433:    Level: advanced

    435: .seealso: FNSetParallel()
    436: @*/
    437: PetscErrorCode FNGetParallel(FN fn,FNParallelType *pmode)
    438: {
    439:   PetscFunctionBegin;
    441:   PetscAssertPointer(pmode,2);
    442:   *pmode = fn->pmode;
    443:   PetscFunctionReturn(PETSC_SUCCESS);
    444: }

    446: /*@
    447:    FNEvaluateFunction - Computes the value of the function f(x) for a given x.

    449:    Not Collective

    451:    Input Parameters:
    452: +  fn - the math function context
    453: -  x  - the value where the function must be evaluated

    455:    Output Parameter:
    456: .  y  - the result of f(x)

    458:    Note:
    459:    Scaling factors are taken into account, so the actual function evaluation
    460:    will return beta*f(alpha*x).

    462:    Level: intermediate

    464: .seealso: FNEvaluateDerivative(), FNEvaluateFunctionMat(), FNSetScale()
    465: @*/
    466: PetscErrorCode FNEvaluateFunction(FN fn,PetscScalar x,PetscScalar *y)
    467: {
    468:   PetscScalar    xf,yf;

    470:   PetscFunctionBegin;
    473:   PetscAssertPointer(y,3);
    474:   PetscCall(PetscLogEventBegin(FN_Evaluate,fn,0,0,0));
    475:   xf = fn->alpha*x;
    476:   PetscUseTypeMethod(fn,evaluatefunction,xf,&yf);
    477:   *y = fn->beta*yf;
    478:   PetscCall(PetscLogEventEnd(FN_Evaluate,fn,0,0,0));
    479:   PetscFunctionReturn(PETSC_SUCCESS);
    480: }

    482: /*@
    483:    FNEvaluateDerivative - Computes the value of the derivative f'(x) for a given x.

    485:    Not Collective

    487:    Input Parameters:
    488: +  fn - the math function context
    489: -  x  - the value where the derivative must be evaluated

    491:    Output Parameter:
    492: .  y  - the result of f'(x)

    494:    Note:
    495:    Scaling factors are taken into account, so the actual derivative evaluation will
    496:    return alpha*beta*f'(alpha*x).

    498:    Level: intermediate

    500: .seealso: FNEvaluateFunction()
    501: @*/
    502: PetscErrorCode FNEvaluateDerivative(FN fn,PetscScalar x,PetscScalar *y)
    503: {
    504:   PetscScalar    xf,yf;

    506:   PetscFunctionBegin;
    509:   PetscAssertPointer(y,3);
    510:   PetscCall(PetscLogEventBegin(FN_Evaluate,fn,0,0,0));
    511:   xf = fn->alpha*x;
    512:   PetscUseTypeMethod(fn,evaluatederivative,xf,&yf);
    513:   *y = fn->alpha*fn->beta*yf;
    514:   PetscCall(PetscLogEventEnd(FN_Evaluate,fn,0,0,0));
    515:   PetscFunctionReturn(PETSC_SUCCESS);
    516: }

    518: static PetscErrorCode FNEvaluateFunctionMat_Sym_Private(FN fn,const PetscScalar *As,PetscScalar *Bs,PetscInt m,PetscBool firstonly)
    519: {
    520:   PetscInt       i,j;
    521:   PetscBLASInt   n,k,ld,lwork,info;
    522:   PetscScalar    *Q,*W,*work,adummy,a,x,y,one=1.0,zero=0.0;
    523:   PetscReal      *eig,dummy;
    524: #if defined(PETSC_USE_COMPLEX)
    525:   PetscReal      *rwork,rdummy;
    526: #endif

    528:   PetscFunctionBegin;
    529:   PetscCall(PetscBLASIntCast(m,&n));
    530:   ld = n;
    531:   k = firstonly? 1: n;

    533:   /* workspace query and memory allocation */
    534:   lwork = -1;
    535: #if defined(PETSC_USE_COMPLEX)
    536:   PetscCallBLAS("LAPACKsyev",LAPACKsyev_("V","L",&n,&adummy,&ld,&dummy,&a,&lwork,&rdummy,&info));
    537:   PetscCall(PetscBLASIntCast((PetscInt)PetscRealPart(a),&lwork));
    538:   PetscCall(PetscMalloc5(m,&eig,m*m,&Q,m*k,&W,lwork,&work,PetscMax(1,3*m-2),&rwork));
    539: #else
    540:   PetscCallBLAS("LAPACKsyev",LAPACKsyev_("V","L",&n,&adummy,&ld,&dummy,&a,&lwork,&info));
    541:   PetscCall(PetscBLASIntCast((PetscInt)a,&lwork));
    542:   PetscCall(PetscMalloc4(m,&eig,m*m,&Q,m*k,&W,lwork,&work));
    543: #endif

    545:   /* compute eigendecomposition */
    546:   for (j=0;j<n;j++) for (i=j;i<n;i++) Q[i+j*ld] = As[i+j*ld];
    547: #if defined(PETSC_USE_COMPLEX)
    548:   PetscCallBLAS("LAPACKsyev",LAPACKsyev_("V","L",&n,Q,&ld,eig,work,&lwork,rwork,&info));
    549: #else
    550:   PetscCallBLAS("LAPACKsyev",LAPACKsyev_("V","L",&n,Q,&ld,eig,work,&lwork,&info));
    551: #endif
    552:   SlepcCheckLapackInfo("syev",info);

    554:   /* W = f(Lambda)*Q' */
    555:   for (i=0;i<n;i++) {
    556:     x = fn->alpha*eig[i];
    557:     PetscUseTypeMethod(fn,evaluatefunction,x,&y);  /* y = f(x) */
    558:     for (j=0;j<k;j++) W[i+j*ld] = PetscConj(Q[j+i*ld])*fn->beta*y;
    559:   }
    560:   /* Bs = Q*W */
    561:   PetscCallBLAS("BLASgemm",BLASgemm_("N","N",&n,&k,&n,&one,Q,&ld,W,&ld,&zero,Bs,&ld));
    562: #if defined(PETSC_USE_COMPLEX)
    563:   PetscCall(PetscFree5(eig,Q,W,work,rwork));
    564: #else
    565:   PetscCall(PetscFree4(eig,Q,W,work));
    566: #endif
    567:   PetscCall(PetscLogFlops(9.0*n*n*n+2.0*n*n*n));
    568:   PetscFunctionReturn(PETSC_SUCCESS);
    569: }

    571: /*
    572:    FNEvaluateFunctionMat_Sym_Default - given a symmetric matrix A,
    573:    compute the matrix function as f(A)=Q*f(D)*Q' where the spectral
    574:    decomposition of A is A=Q*D*Q'
    575: */
    576: static PetscErrorCode FNEvaluateFunctionMat_Sym_Default(FN fn,Mat A,Mat B)
    577: {
    578:   PetscInt          m;
    579:   const PetscScalar *As;
    580:   PetscScalar       *Bs;

    582:   PetscFunctionBegin;
    583:   PetscCall(MatDenseGetArrayRead(A,&As));
    584:   PetscCall(MatDenseGetArray(B,&Bs));
    585:   PetscCall(MatGetSize(A,&m,NULL));
    586:   PetscCall(FNEvaluateFunctionMat_Sym_Private(fn,As,Bs,m,PETSC_FALSE));
    587:   PetscCall(MatDenseRestoreArrayRead(A,&As));
    588:   PetscCall(MatDenseRestoreArray(B,&Bs));
    589:   PetscFunctionReturn(PETSC_SUCCESS);
    590: }

    592: static PetscErrorCode FNEvaluateFunctionMat_Basic(FN fn,Mat A,Mat F)
    593: {
    594:   PetscBool iscuda;

    596:   PetscFunctionBegin;
    597:   PetscCall(PetscObjectTypeCompare((PetscObject)A,MATSEQDENSECUDA,&iscuda));
    598:   if (iscuda && !fn->ops->evaluatefunctionmatcuda[fn->method]) PetscCall(PetscInfo(fn,"The method %" PetscInt_FMT " is not implemented for CUDA, falling back to CPU version\n",fn->method));
    599:   if (iscuda && fn->ops->evaluatefunctionmatcuda[fn->method]) PetscUseTypeMethod(fn,evaluatefunctionmatcuda[fn->method],A,F);
    600:   else if (fn->ops->evaluatefunctionmat[fn->method]) PetscUseTypeMethod(fn,evaluatefunctionmat[fn->method],A,F);
    601:   else {
    602:     PetscCheck(fn->method,PetscObjectComm((PetscObject)fn),PETSC_ERR_SUP,"Matrix functions not implemented in this FN type");
    603:     PetscCheck(!fn->method,PetscObjectComm((PetscObject)fn),PETSC_ERR_ARG_OUTOFRANGE,"The specified method number does not exist for this FN type");
    604:   }
    605:   PetscFunctionReturn(PETSC_SUCCESS);
    606: }

    608: PetscErrorCode FNEvaluateFunctionMat_Private(FN fn,Mat A,Mat B,PetscBool sync)
    609: {
    610:   PetscBool      set,flg,symm=PETSC_FALSE,iscuda,hasspecificmeth;
    611:   PetscInt       m,n;
    612:   PetscMPIInt    size,rank;
    613:   PetscScalar    *pF;
    614:   Mat            M,F;

    616:   PetscFunctionBegin;
    617:   /* destination matrix */
    618:   F = B?B:A;

    620:   /* check symmetry of A */
    621:   PetscCall(MatIsHermitianKnown(A,&set,&flg));
    622:   symm = set? flg: PETSC_FALSE;

    624:   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)fn),&size));
    625:   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)fn),&rank));
    626:   if (size==1 || fn->pmode==FN_PARALLEL_REDUNDANT || (fn->pmode==FN_PARALLEL_SYNCHRONIZED && !rank)) {
    627:     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
    628:     PetscCall(PetscObjectTypeCompare((PetscObject)A,MATSEQDENSECUDA,&iscuda));
    629:     hasspecificmeth = ((iscuda && fn->ops->evaluatefunctionmatcuda[fn->method]) || (!iscuda && fn->method && fn->ops->evaluatefunctionmat[fn->method]))? PETSC_TRUE: PETSC_FALSE;
    630:     if (!hasspecificmeth && symm && !fn->method) {  /* prefer diagonalization */
    631:       PetscCall(PetscInfo(fn,"Computing matrix function via diagonalization\n"));
    632:       PetscCall(FNEvaluateFunctionMat_Sym_Default(fn,A,F));
    633:     } else {
    634:       /* scale argument */
    635:       if (fn->alpha!=(PetscScalar)1.0) {
    636:         PetscCall(FN_AllocateWorkMat(fn,A,&M));
    637:         PetscCall(MatScale(M,fn->alpha));
    638:       } else M = A;
    639:       PetscCall(FNEvaluateFunctionMat_Basic(fn,M,F));
    640:       if (fn->alpha!=(PetscScalar)1.0) PetscCall(FN_FreeWorkMat(fn,&M));
    641:       /* scale result */
    642:       PetscCall(MatScale(F,fn->beta));
    643:     }
    644:     PetscCall(PetscFPTrapPop());
    645:   }
    646:   if (size>1 && fn->pmode==FN_PARALLEL_SYNCHRONIZED && sync) {  /* synchronize */
    647:     PetscCall(MatGetSize(A,&m,&n));
    648:     PetscCall(MatDenseGetArray(F,&pF));
    649:     PetscCallMPI(MPI_Bcast(pF,n*n,MPIU_SCALAR,0,PetscObjectComm((PetscObject)fn)));
    650:     PetscCall(MatDenseRestoreArray(F,&pF));
    651:   }
    652:   PetscFunctionReturn(PETSC_SUCCESS);
    653: }

    655: /*@
    656:    FNEvaluateFunctionMat - Computes the value of the function f(A) for a given
    657:    matrix A, where the result is also a matrix.

    659:    Logically Collective

    661:    Input Parameters:
    662: +  fn - the math function context
    663: -  A  - matrix on which the function must be evaluated

    665:    Output Parameter:
    666: .  B  - (optional) matrix resulting from evaluating f(A)

    668:    Notes:
    669:    Matrix A must be a square sequential dense Mat, with all entries equal on
    670:    all processes (otherwise each process will compute different results).
    671:    If matrix B is provided, it must also be a square sequential dense Mat, and
    672:    both matrices must have the same dimensions. If B is NULL (or B=A) then the
    673:    function will perform an in-place computation, overwriting A with f(A).

    675:    If A is known to be real symmetric or complex Hermitian then it is
    676:    recommended to set the appropriate flag with MatSetOption(), because
    677:    symmetry can sometimes be exploited by the algorithm.

    679:    Scaling factors are taken into account, so the actual function evaluation
    680:    will return beta*f(alpha*A).

    682:    Level: advanced

    684: .seealso: FNEvaluateFunction(), FNEvaluateFunctionMatVec(), FNSetMethod()
    685: @*/
    686: PetscErrorCode FNEvaluateFunctionMat(FN fn,Mat A,Mat B)
    687: {
    688:   PetscBool      inplace=PETSC_FALSE;
    689:   PetscInt       m,n,n1;
    690:   MatType        type;

    692:   PetscFunctionBegin;
    697:   if (B) {
    700:   } else inplace = PETSC_TRUE;
    701:   PetscCheckTypeNames(A,MATSEQDENSE,MATSEQDENSECUDA);
    702:   PetscCall(MatGetSize(A,&m,&n));
    703:   PetscCheck(m==n,PetscObjectComm((PetscObject)fn),PETSC_ERR_ARG_SIZ,"Mat A is not square (has %" PetscInt_FMT " rows, %" PetscInt_FMT " cols)",m,n);
    704:   if (!inplace) {
    705:     PetscCall(MatGetType(A,&type));
    706:     PetscCheckTypeName(B,type);
    707:     n1 = n;
    708:     PetscCall(MatGetSize(B,&m,&n));
    709:     PetscCheck(m==n,PetscObjectComm((PetscObject)fn),PETSC_ERR_ARG_SIZ,"Mat B is not square (has %" PetscInt_FMT " rows, %" PetscInt_FMT " cols)",m,n);
    710:     PetscCheck(n1==n,PetscObjectComm((PetscObject)fn),PETSC_ERR_ARG_SIZ,"Matrices A and B must have the same dimension");
    711:   }

    713:   /* evaluate matrix function */
    714:   PetscCall(PetscLogEventBegin(FN_Evaluate,fn,0,0,0));
    715:   PetscCall(FNEvaluateFunctionMat_Private(fn,A,B,PETSC_TRUE));
    716:   PetscCall(PetscLogEventEnd(FN_Evaluate,fn,0,0,0));
    717:   PetscFunctionReturn(PETSC_SUCCESS);
    718: }

    720: /*
    721:    FNEvaluateFunctionMatVec_Default - computes the full matrix f(A)
    722:    and then copies the first column.
    723: */
    724: static PetscErrorCode FNEvaluateFunctionMatVec_Default(FN fn,Mat A,Vec v)
    725: {
    726:   Mat            F;

    728:   PetscFunctionBegin;
    729:   PetscCall(FN_AllocateWorkMat(fn,A,&F));
    730:   PetscCall(FNEvaluateFunctionMat_Basic(fn,A,F));
    731:   PetscCall(MatGetColumnVector(F,v,0));
    732:   PetscCall(FN_FreeWorkMat(fn,&F));
    733:   PetscFunctionReturn(PETSC_SUCCESS);
    734: }

    736: /*
    737:    FNEvaluateFunctionMatVec_Sym_Default - given a symmetric matrix A,
    738:    compute the matrix function as f(A)=Q*f(D)*Q' where the spectral
    739:    decomposition of A is A=Q*D*Q'. Only the first column is computed.
    740: */
    741: static PetscErrorCode FNEvaluateFunctionMatVec_Sym_Default(FN fn,Mat A,Vec v)
    742: {
    743:   PetscInt          m;
    744:   const PetscScalar *As;
    745:   PetscScalar       *vs;

    747:   PetscFunctionBegin;
    748:   PetscCall(MatDenseGetArrayRead(A,&As));
    749:   PetscCall(VecGetArray(v,&vs));
    750:   PetscCall(MatGetSize(A,&m,NULL));
    751:   PetscCall(FNEvaluateFunctionMat_Sym_Private(fn,As,vs,m,PETSC_TRUE));
    752:   PetscCall(MatDenseRestoreArrayRead(A,&As));
    753:   PetscCall(VecRestoreArray(v,&vs));
    754:   PetscFunctionReturn(PETSC_SUCCESS);
    755: }

    757: PetscErrorCode FNEvaluateFunctionMatVec_Private(FN fn,Mat A,Vec v,PetscBool sync)
    758: {
    759:   PetscBool      set,flg,symm=PETSC_FALSE,iscuda,hasspecificmeth;
    760:   PetscInt       m,n;
    761:   Mat            M;
    762:   PetscMPIInt    size,rank;
    763:   PetscScalar    *pv;

    765:   PetscFunctionBegin;
    766:   /* check symmetry of A */
    767:   PetscCall(MatIsHermitianKnown(A,&set,&flg));
    768:   symm = set? flg: PETSC_FALSE;

    770:   /* evaluate matrix function */
    771:   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)fn),&size));
    772:   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)fn),&rank));
    773:   if (size==1 || fn->pmode==FN_PARALLEL_REDUNDANT || (fn->pmode==FN_PARALLEL_SYNCHRONIZED && !rank)) {
    774:     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
    775:     PetscCall(PetscObjectTypeCompare((PetscObject)A,MATSEQDENSECUDA,&iscuda));
    776:     hasspecificmeth = ((iscuda && fn->ops->evaluatefunctionmatcuda[fn->method]) || (!iscuda && fn->method && fn->ops->evaluatefunctionmat[fn->method]))? PETSC_TRUE: PETSC_FALSE;
    777:     if (!hasspecificmeth && symm && !fn->method) {  /* prefer diagonalization */
    778:       PetscCall(PetscInfo(fn,"Computing matrix function via diagonalization\n"));
    779:       PetscCall(FNEvaluateFunctionMatVec_Sym_Default(fn,A,v));
    780:     } else {
    781:       /* scale argument */
    782:       if (fn->alpha!=(PetscScalar)1.0) {
    783:         PetscCall(FN_AllocateWorkMat(fn,A,&M));
    784:         PetscCall(MatScale(M,fn->alpha));
    785:       } else M = A;
    786:       if (iscuda && fn->ops->evaluatefunctionmatveccuda[fn->method]) PetscUseTypeMethod(fn,evaluatefunctionmatveccuda[fn->method],M,v);
    787:       else if (fn->ops->evaluatefunctionmatvec[fn->method]) PetscUseTypeMethod(fn,evaluatefunctionmatvec[fn->method],M,v);
    788:       else PetscCall(FNEvaluateFunctionMatVec_Default(fn,M,v));
    789:       if (fn->alpha!=(PetscScalar)1.0) PetscCall(FN_FreeWorkMat(fn,&M));
    790:       /* scale result */
    791:       PetscCall(VecScale(v,fn->beta));
    792:     }
    793:     PetscCall(PetscFPTrapPop());
    794:   }

    796:   /* synchronize */
    797:   if (size>1 && fn->pmode==FN_PARALLEL_SYNCHRONIZED && sync) {
    798:     PetscCall(MatGetSize(A,&m,&n));
    799:     PetscCall(VecGetArray(v,&pv));
    800:     PetscCallMPI(MPI_Bcast(pv,n,MPIU_SCALAR,0,PetscObjectComm((PetscObject)fn)));
    801:     PetscCall(VecRestoreArray(v,&pv));
    802:   }
    803:   PetscFunctionReturn(PETSC_SUCCESS);
    804: }

    806: /*@
    807:    FNEvaluateFunctionMatVec - Computes the first column of the matrix f(A)
    808:    for a given matrix A.

    810:    Logically Collective

    812:    Input Parameters:
    813: +  fn - the math function context
    814: -  A  - matrix on which the function must be evaluated

    816:    Output Parameter:
    817: .  v  - vector to hold the first column of f(A)

    819:    Notes:
    820:    This operation is similar to FNEvaluateFunctionMat() but returns only
    821:    the first column of f(A), hence saving computations in most cases.

    823:    Level: advanced

    825: .seealso: FNEvaluateFunction(), FNEvaluateFunctionMat(), FNSetMethod()
    826: @*/
    827: PetscErrorCode FNEvaluateFunctionMatVec(FN fn,Mat A,Vec v)
    828: {
    829:   PetscInt       m,n;
    830:   PetscBool      iscuda;

    832:   PetscFunctionBegin;
    839:   PetscCheckTypeNames(A,MATSEQDENSE,MATSEQDENSECUDA);
    840:   PetscCall(MatGetSize(A,&m,&n));
    841:   PetscCheck(m==n,PetscObjectComm((PetscObject)fn),PETSC_ERR_ARG_SIZ,"Mat A is not square (has %" PetscInt_FMT " rows, %" PetscInt_FMT " cols)",m,n);
    842:   PetscCall(PetscObjectTypeCompare((PetscObject)A,MATSEQDENSECUDA,&iscuda));
    843:   PetscCheckTypeName(v,iscuda?VECSEQCUDA:VECSEQ);
    844:   PetscCall(VecGetSize(v,&m));
    845:   PetscCheck(m==n,PetscObjectComm((PetscObject)fn),PETSC_ERR_ARG_SIZ,"Matrix A and vector v must have the same size");
    846:   PetscCall(PetscLogEventBegin(FN_Evaluate,fn,0,0,0));
    847:   PetscCall(FNEvaluateFunctionMatVec_Private(fn,A,v,PETSC_TRUE));
    848:   PetscCall(PetscLogEventEnd(FN_Evaluate,fn,0,0,0));
    849:   PetscFunctionReturn(PETSC_SUCCESS);
    850: }

    852: /*@
    853:    FNSetFromOptions - Sets FN options from the options database.

    855:    Collective

    857:    Input Parameters:
    858: .  fn - the math function context

    860:    Notes:
    861:    To see all options, run your program with the -help option.

    863:    Level: beginner

    865: .seealso: FNSetOptionsPrefix()
    866: @*/
    867: PetscErrorCode FNSetFromOptions(FN fn)
    868: {
    869:   char           type[256];
    870:   PetscScalar    array[2];
    871:   PetscInt       k,meth;
    872:   PetscBool      flg;
    873:   FNParallelType pmode;

    875:   PetscFunctionBegin;
    877:   PetscCall(FNRegisterAll());
    878:   PetscObjectOptionsBegin((PetscObject)fn);
    879:     PetscCall(PetscOptionsFList("-fn_type","Math function type","FNSetType",FNList,(char*)(((PetscObject)fn)->type_name?((PetscObject)fn)->type_name:FNRATIONAL),type,sizeof(type),&flg));
    880:     if (flg) PetscCall(FNSetType(fn,type));
    881:     else if (!((PetscObject)fn)->type_name) PetscCall(FNSetType(fn,FNRATIONAL));

    883:     k = 2;
    884:     array[0] = 0.0; array[1] = 0.0;
    885:     PetscCall(PetscOptionsScalarArray("-fn_scale","Scale factors (one or two scalar values separated with a comma without spaces)","FNSetScale",array,&k,&flg));
    886:     if (flg) {
    887:       if (k<2) array[1] = 1.0;
    888:       PetscCall(FNSetScale(fn,array[0],array[1]));
    889:     }

    891:     PetscCall(PetscOptionsInt("-fn_method","Method to be used for computing matrix functions","FNSetMethod",fn->method,&meth,&flg));
    892:     if (flg) PetscCall(FNSetMethod(fn,meth));

    894:     PetscCall(PetscOptionsEnum("-fn_parallel","Operation mode in parallel runs","FNSetParallel",FNParallelTypes,(PetscEnum)fn->pmode,(PetscEnum*)&pmode,&flg));
    895:     if (flg) PetscCall(FNSetParallel(fn,pmode));

    897:     PetscTryTypeMethod(fn,setfromoptions,PetscOptionsObject);
    898:     PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)fn,PetscOptionsObject));
    899:   PetscOptionsEnd();
    900:   PetscFunctionReturn(PETSC_SUCCESS);
    901: }

    903: /*@C
    904:    FNView - Prints the FN data structure.

    906:    Collective

    908:    Input Parameters:
    909: +  fn - the math function context
    910: -  viewer - optional visualization context

    912:    Note:
    913:    The available visualization contexts include
    914: +     PETSC_VIEWER_STDOUT_SELF - standard output (default)
    915: -     PETSC_VIEWER_STDOUT_WORLD - synchronized standard
    916:          output where only the first processor opens
    917:          the file.  All other processors send their
    918:          data to the first processor to print.

    920:    The user can open an alternative visualization context with
    921:    PetscViewerASCIIOpen() - output to a specified file.

    923:    Level: beginner

    925: .seealso: FNCreate()
    926: @*/
    927: PetscErrorCode FNView(FN fn,PetscViewer viewer)
    928: {
    929:   PetscBool      isascii;
    930:   PetscMPIInt    size;

    932:   PetscFunctionBegin;
    934:   if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)fn),&viewer));
    936:   PetscCheckSameComm(fn,1,viewer,2);
    937:   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&isascii));
    938:   if (isascii) {
    939:     PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)fn,viewer));
    940:     PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)fn),&size));
    941:     if (size>1) PetscCall(PetscViewerASCIIPrintf(viewer,"  parallel operation mode: %s\n",FNParallelTypes[fn->pmode]));
    942:     PetscCall(PetscViewerASCIIPushTab(viewer));
    943:     PetscTryTypeMethod(fn,view,viewer);
    944:     PetscCall(PetscViewerASCIIPopTab(viewer));
    945:   }
    946:   PetscFunctionReturn(PETSC_SUCCESS);
    947: }

    949: /*@C
    950:    FNViewFromOptions - View from options

    952:    Collective

    954:    Input Parameters:
    955: +  fn   - the math function context
    956: .  obj  - optional object
    957: -  name - command line option

    959:    Level: intermediate

    961: .seealso: FNView(), FNCreate()
    962: @*/
    963: PetscErrorCode FNViewFromOptions(FN fn,PetscObject obj,const char name[])
    964: {
    965:   PetscFunctionBegin;
    967:   PetscCall(PetscObjectViewFromOptions((PetscObject)fn,obj,name));
    968:   PetscFunctionReturn(PETSC_SUCCESS);
    969: }

    971: /*@
    972:    FNDuplicate - Duplicates a math function, copying all parameters, possibly with a
    973:    different communicator.

    975:    Collective

    977:    Input Parameters:
    978: +  fn   - the math function context
    979: -  comm - MPI communicator

    981:    Output Parameter:
    982: .  newfn - location to put the new FN context

    984:    Note:
    985:    In order to use the same MPI communicator as in the original object,
    986:    use PetscObjectComm((PetscObject)fn).

    988:    Level: developer

    990: .seealso: FNCreate()
    991: @*/
    992: PetscErrorCode FNDuplicate(FN fn,MPI_Comm comm,FN *newfn)
    993: {
    994:   FNType         type;
    995:   PetscScalar    alpha,beta;
    996:   PetscInt       meth;
    997:   FNParallelType ptype;

    999:   PetscFunctionBegin;
    1002:   PetscAssertPointer(newfn,3);
    1003:   PetscCall(FNCreate(comm,newfn));
    1004:   PetscCall(FNGetType(fn,&type));
    1005:   PetscCall(FNSetType(*newfn,type));
    1006:   PetscCall(FNGetScale(fn,&alpha,&beta));
    1007:   PetscCall(FNSetScale(*newfn,alpha,beta));
    1008:   PetscCall(FNGetMethod(fn,&meth));
    1009:   PetscCall(FNSetMethod(*newfn,meth));
    1010:   PetscCall(FNGetParallel(fn,&ptype));
    1011:   PetscCall(FNSetParallel(*newfn,ptype));
    1012:   PetscTryTypeMethod(fn,duplicate,comm,newfn);
    1013:   PetscFunctionReturn(PETSC_SUCCESS);
    1014: }

    1016: /*@C
    1017:    FNDestroy - Destroys FN context that was created with FNCreate().

    1019:    Collective

    1021:    Input Parameter:
    1022: .  fn - the math function context

    1024:    Level: beginner

    1026: .seealso: FNCreate()
    1027: @*/
    1028: PetscErrorCode FNDestroy(FN *fn)
    1029: {
    1030:   PetscInt       i;

    1032:   PetscFunctionBegin;
    1033:   if (!*fn) PetscFunctionReturn(PETSC_SUCCESS);
    1035:   if (--((PetscObject)*fn)->refct > 0) { *fn = NULL; PetscFunctionReturn(PETSC_SUCCESS); }
    1036:   PetscTryTypeMethod(*fn,destroy);
    1037:   for (i=0;i<(*fn)->nw;i++) PetscCall(MatDestroy(&(*fn)->W[i]));
    1038:   PetscCall(PetscHeaderDestroy(fn));
    1039:   PetscFunctionReturn(PETSC_SUCCESS);
    1040: }

    1042: /*@C
    1043:    FNRegister - Adds a mathematical function to the FN package.

    1045:    Not Collective

    1047:    Input Parameters:
    1048: +  name - name of a new user-defined FN
    1049: -  function - routine to create context

    1051:    Notes:
    1052:    FNRegister() may be called multiple times to add several user-defined functions.

    1054:    Level: advanced

    1056: .seealso: FNRegisterAll()
    1057: @*/
    1058: PetscErrorCode FNRegister(const char *name,PetscErrorCode (*function)(FN))
    1059: {
    1060:   PetscFunctionBegin;
    1061:   PetscCall(FNInitializePackage());
    1062:   PetscCall(PetscFunctionListAdd(&FNList,name,function));
    1063:   PetscFunctionReturn(PETSC_SUCCESS);
    1064: }