##fileformat=VCFv4.1
##source=mason_variator
##reference=../input/adeno_virus.fa
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=TARGETPOS,Number=1,Type=String,Description="Target position for duplications.">
##ALT=<ID=INV,Description="Inversion">
##ALT=<ID=DUP,Description="Duplication">
##contig=<ID=gi|56160436|ref|AC_000005.1|,length=34125>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	simulated
gi|56160436|ref|AC_000005.1|	55	sim_sv_indel_0	G	GATATAACAGGGAAGAGTGTTACCCAATTCTATACGGAGCTTTCGCGTGCGTTAAGCTCGGCAGTAGATGCGCACCGGTACATAAGATCATGCTACGAAAGC	.	PASS	SVTYPE=INS;SVLEN=101	.	1
gi|56160436|ref|AC_000005.1|	118	sim_sv_indel_1	G	GCCTACACTCTTGATACAGCCGAACCGAAAGGCTTCCTCTAAAAGGACACGTGTCATTACAAGCTAGTAACATTGATCTAACAACTAGAACCCCAGTGGCAAATGTTGTCGGGGATTTGTTGTGGGGCTTCTACACCCTTAACCAACCCCAGAAGGTTAAGGTTGACGCCAACTATGGCCGGCGAATTCACTAATCTTGCCGATTCCCAATGCGTTGCTTCTTGATTGAAGTCGGAGCGGACCTACCGTACTAGCTACAGGTTCTCACGGTGCAGGCCC	.	PASS	SVTYPE=INS;SVLEN=278	.	1
gi|56160436|ref|AC_000005.1|	141	sim_inv_0	A	<INV>	.	PASS	SVTYPE=INV;END=437;SVLEN=296	.	1
gi|56160436|ref|AC_000005.1|	454	sim_sv_indel_2	G	GATTATAAATTCAAACACCTCTGAGACTCAACAAGCGCGTAACCCGCACAGATATGAGGTGATGCTAACTCTTCCTGTAACTGGCCCCGAGAAAGTCCTGGTAGAGTCCCGTACACAGGAGAGGACCTTCAT	.	PASS	SVTYPE=INS;SVLEN=131	.	1
gi|56160436|ref|AC_000005.1|	477	sim_inv_1	T	<INV>	.	PASS	SVTYPE=INV;END=681;SVLEN=204	.	1
gi|56160436|ref|AC_000005.1|	735	sim_inv_2	T	<INV>	.	PASS	SVTYPE=INV;END=762;SVLEN=27	.	1
gi|56160436|ref|AC_000005.1|	767	sim_dup_0	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=204;END=971;TARGETPOS=gi|56160436|ref|AC_000005.1|:1064	.	1
gi|56160436|ref|AC_000005.1|	1066	sim_dup_1	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=159;END=1225;TARGETPOS=gi|56160436|ref|AC_000005.1|:1339	.	1
gi|56160436|ref|AC_000005.1|	1371	sim_inv_3	T	<INV>	.	PASS	SVTYPE=INV;END=1414;SVLEN=43	.	1
gi|56160436|ref|AC_000005.1|	1486	sim_inv_4	G	<INV>	.	PASS	SVTYPE=INV;END=1781;SVLEN=295	.	1
gi|56160436|ref|AC_000005.1|	1794	sim_dup_2	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=45;END=1839;TARGETPOS=gi|56160436|ref|AC_000005.1|:2128	.	1
gi|56160436|ref|AC_000005.1|	2135	sim_inv_5	G	<INV>	.	PASS	SVTYPE=INV;END=2420;SVLEN=285	.	1
gi|56160436|ref|AC_000005.1|	2424	sim_sv_indel_3	A	ACACTCTGTTTAGCTCCTAGTTGAGTGCCCACGAGAGTATTTTTTGCAGGGGCCAAGATGAATGCGCACGACCGAACCCTACCATATGAAGAGTAGCTTCC	.	PASS	SVTYPE=INS;SVLEN=100	.	1
gi|56160436|ref|AC_000005.1|	2461	sim_sv_indel_4	AATGCAGGGTATGGGCCCAGGGGTGGTGGGTTTGGATGGAATTACATTTATAAATGTTAGGTTTGCTGGAGATAAGTTTAAAGGCATTATGTTCGAAGCTAATACCTGTCTTGTCTTGCATGGTGTTTACTTTCTTAACTTTAGTAACATTTGTGTAGAGTCTTGGAATAAGGTTTCTGCTAGGGG	A	.	PASS	SVTYPE=DEL;SVLEN=-185	.	1
gi|56160436|ref|AC_000005.1|	2685	sim_sv_indel_5	G	GTCGGTTGTATGATATGGAGGAAGAATCGGTGGGAGGCTTAGGGGACTCGCCTCCCAAACACCAGCCTATCTCTCATTGGACGAACCTTAAATGCATTCGACTGATTCTATCCGGTTTGGTGCGCTCATCCGCGCCGACCTGGATAACCGTGTGAAACTTCTGACATCTATCTCCCGTTACCATTTCCAGGCTTGTGCCTTGTCTTTCTGAGGGCGTCAGATT	.	PASS	SVTYPE=INS;SVLEN=222	.	1
gi|56160436|ref|AC_000005.1|	2732	sim_sv_indel_6	G	GGGGCGTTACAGACCTCACCAGCGGCAGTACCCCCTCACTGGCTACCCCATTGGGGGGACAAATATAATCAAGGCTAGAGTTGGGATCGGCAGCAATTAAAGGACAGCGGCAAGCCGCGCAGTCCTCGCCCTGGTTAGGGAACTTGCCCGGATACCTGATCCTAGCGCGCCTCGATGTGTGCTCTTGGCTACTTTCGTGCGCAGACAGAGAGCAATATGTAATGGTAAGAATTCTCTTACCGTTAACCAGAGAAGGGT	.	PASS	SVTYPE=INS;SVLEN=257	.	1
gi|56160436|ref|AC_000005.1|	2778	sim_dup_3	C	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=194;END=2972;TARGETPOS=gi|56160436|ref|AC_000005.1|:3196	.	1
gi|56160436|ref|AC_000005.1|	3271	sim_sv_indel_7	G	GTCCCCAACTCGAGTCGGCGGACAACGCCCCGAGTACGCCCGTCATCGTGCACGCCTGTGGGTTTACGGCAGGTATAGTGGTCGAAAGGTACTGTACAGCCGTGGTCAAAGGAGTGAAGCGCTTCCCCTTGACCCGACCGCAACGAGATACACAAACTATAGGACGCAGTCCGAATGCGTGGTAACGTTGGTTGAACCTGCGAAACGCTGTCACAGACGCTCCAGCTACGACCAGTGTGATACATCTTAGGAAGGAGAAAAAACAACGAACGAATCGGGTGCCA	.	PASS	SVTYPE=INS;SVLEN=283	.	1
gi|56160436|ref|AC_000005.1|	3306	sim_sv_indel_8	TGGAGCTAGGTGGGATTATAAAAGGCTGGAAGTCAACTAAAAATTGTTTTTGTTCTTTTAACAGCACGATGAACGGAACTACTCAGAACAACGCTGCGCTTTTTGATGG	T	.	PASS	SVTYPE=DEL;SVLEN=-108	.	1
gi|56160436|ref|AC_000005.1|	3432	sim_inv_6	A	<INV>	.	PASS	SVTYPE=INV;END=3700;SVLEN=268	.	1
gi|56160436|ref|AC_000005.1|	3827	sim_sv_indel_9	GATGGTGTTATGAATCTTTATTGATACTTGTTTTTTCTGACATGGTAAGCTCTTGACCACCGTTCCCTATCATTAAGAACACGGTGAATGTGTTCCAGTATTTTGTAAAGATGAGCCTGTATATTAAGGTACATTGGCATTAGGCCATCTTTGGGATGAAGGTAGGACCATTGAAGGGCTT	G	.	PASS	SVTYPE=DEL;SVLEN=-180	.	1
gi|56160436|ref|AC_000005.1|	4070	sim_sv_indel_10	A	AAGATACGTGATTAGAACGCCCGTACACACATATCTATCCGCAAGGCAGAGAAGACCACTATTCTGAATCTTGTTAGACCTGTTCGCTGTTCGCGTTAGTCCACAGCATACAAGGGA	.	PASS	SVTYPE=INS;SVLEN=116	.	1
gi|56160436|ref|AC_000005.1|	4085	sim_dup_4	A	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=220;END=4305;TARGETPOS=gi|56160436|ref|AC_000005.1|:4395	.	1
gi|56160436|ref|AC_000005.1|	4434	sim_dup_5	G	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=268;END=4702;TARGETPOS=gi|56160436|ref|AC_000005.1|:4845	.	1
gi|56160436|ref|AC_000005.1|	4885	sim_sv_indel_11	G	GTACCAATTCTCACGATCGATACGCCGCTATGTCCCTATAGGAGTTAATTCGCAGCTATATTTCTCCGTGCCAGCGGGATCCTCAATTTACGAGAATACACAAGAAGATCTACACAGACAAATCCAAAGGTAATTAAGCCCTATTGCTGAATCTACGACCTATTGGGTATAGATGCTCGTAGTACCAGAG	.	PASS	SVTYPE=INS;SVLEN=189	.	1
gi|56160436|ref|AC_000005.1|	4944	sim_dup_6	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=224;END=5168;TARGETPOS=gi|56160436|ref|AC_000005.1|:5432	.	1
gi|56160436|ref|AC_000005.1|	5442	sim_inv_7	T	<INV>	.	PASS	SVTYPE=INV;END=5631;SVLEN=189	.	1
gi|56160436|ref|AC_000005.1|	5639	sim_dup_7	G	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=54;END=5693;TARGETPOS=gi|56160436|ref|AC_000005.1|:5814	.	1
gi|56160436|ref|AC_000005.1|	5850	sim_dup_8	C	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=215;END=6065;TARGETPOS=gi|56160436|ref|AC_000005.1|:6330	.	1
gi|56160436|ref|AC_000005.1|	6367	sim_inv_8	A	<INV>	.	PASS	SVTYPE=INV;END=6408;SVLEN=41	.	1
gi|56160436|ref|AC_000005.1|	6468	sim_sv_indel_12	G	GAGATAGCCCACACGGTAACCTACACCAGGTTCACCGTGTCGCTGCGACCGTCATTGAGGGTGACACTATTGGACGTGGGATGACTCTAATACATTGGGTAACTAAGGAGTGTTACGCTGGGGCATGGGGTACCCACCTAAAGCTCAGAGATGATCAGTGATCCCCTGGCCACATCTGCAGTGTCATTAAGGCTAAGTGATCCCGCGAAAAGAATCGAGGGTGCTTAAGCCCGTGATCAACTTGGCACACCCCG	.	PASS	SVTYPE=INS;SVLEN=253	.	1
gi|56160436|ref|AC_000005.1|	6472	sim_sv_indel_13	G	GGTATGCCTTAGTAATCGTATCCAGTTGACGAGAGTCAAATATTTGACTGGTATCCGTATGTATCTAAATTGGGTGGCTCACTTGACTTAGGCGAATACTATAGCCCCGTCCATCCTTGCTTCTGGCTGCT	.	PASS	SVTYPE=INS;SVLEN=130	.	1
gi|56160436|ref|AC_000005.1|	6478	sim_dup_9	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=286;END=6764;TARGETPOS=gi|56160436|ref|AC_000005.1|:6826	.	1
gi|56160436|ref|AC_000005.1|	6836	sim_dup_10	A	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=175;END=7011;TARGETPOS=gi|56160436|ref|AC_000005.1|:7110	.	1
gi|56160436|ref|AC_000005.1|	7164	sim_inv_9	A	<INV>	.	PASS	SVTYPE=INV;END=7384;SVLEN=220	.	1
gi|56160436|ref|AC_000005.1|	7397	sim_inv_10	C	<INV>	.	PASS	SVTYPE=INV;END=7425;SVLEN=28	.	1
gi|56160436|ref|AC_000005.1|	7436	sim_inv_11	T	<INV>	.	PASS	SVTYPE=INV;END=7505;SVLEN=69	.	1
gi|56160436|ref|AC_000005.1|	7516	sim_sv_indel_14	TTCATTTTTTCTGGGGTTAAGCAGTAGAAAGTAGTAGAGTCTTTTTCCCA	T	.	PASS	SVTYPE=DEL;SVLEN=-49	.	1
gi|56160436|ref|AC_000005.1|	7693	sim_inv_12	T	<INV>	.	PASS	SVTYPE=INV;END=7920;SVLEN=227	.	1
gi|56160436|ref|AC_000005.1|	7935	sim_sv_indel_15	A	ACCATAGAGGCTATGAGTTTGGACTGTGATACTCGTGGTATAGAGGGCCTTTGCTTCAGCATGTATGTTGCTGTTCCAATGATGAGAGTATGTGAGTAAACACTGGTCCGTCATTATACCAATGCCACAAACTCTTCCCTAATCCGTGTGGCTCGACAGCCCCAATGTTCAGTATATCGC	.	PASS	SVTYPE=INS;SVLEN=179	.	1
gi|56160436|ref|AC_000005.1|	7956	sim_inv_13	C	<INV>	.	PASS	SVTYPE=INV;END=8049;SVLEN=93	.	1
gi|56160436|ref|AC_000005.1|	8053	sim_inv_14	C	<INV>	.	PASS	SVTYPE=INV;END=8226;SVLEN=173	.	1
gi|56160436|ref|AC_000005.1|	8230	sim_dup_11	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=254;END=8484;TARGETPOS=gi|56160436|ref|AC_000005.1|:8716	.	1
gi|56160436|ref|AC_000005.1|	8722	sim_dup_12	G	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=139;END=8861;TARGETPOS=gi|56160436|ref|AC_000005.1|:9135	.	1
gi|56160436|ref|AC_000005.1|	9137	sim_inv_15	T	<INV>	.	PASS	SVTYPE=INV;END=9340;SVLEN=203	.	1
gi|56160436|ref|AC_000005.1|	9364	sim_dup_13	G	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=137;END=9501;TARGETPOS=gi|56160436|ref|AC_000005.1|:9576	.	1
gi|56160436|ref|AC_000005.1|	9577	sim_dup_14	C	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=186;END=9763;TARGETPOS=gi|56160436|ref|AC_000005.1|:10012	.	1
gi|56160436|ref|AC_000005.1|	10122	sim_inv_16	G	<INV>	.	PASS	SVTYPE=INV;END=10264;SVLEN=142	.	1
gi|56160436|ref|AC_000005.1|	10289	sim_sv_indel_16	C	CTTGAACCGCCTAAGACCCAGCTCCACCAGCCCTGCGGATGCAAGACCGGTT	.	PASS	SVTYPE=INS;SVLEN=51	.	1
gi|56160436|ref|AC_000005.1|	10322	sim_sv_indel_17	A	AGTGTACGATCGGTCTTTTTCTGCTGTAGCGGCAAGCTTTGACGAGTGGAGCAGGATAGTGGAGAATAGCACGTCAATGTGCCTCACATGGCATTTCGTGAGAAGAGGAACGAAGGCCGTCTCGGTAGCGAGGTCTTACACTCCTATTCTATCTTAACGAGCCTTAACAAGTAGGATCAGAGAAGCCAGATGGTTATATAGGCACGGGTAGGAGAATAATTAATTTTGG	.	PASS	SVTYPE=INS;SVLEN=228	.	1
gi|56160436|ref|AC_000005.1|	10333	sim_inv_17	A	<INV>	.	PASS	SVTYPE=INV;END=10587;SVLEN=254	.	1
gi|56160436|ref|AC_000005.1|	10705	sim_inv_18	G	<INV>	.	PASS	SVTYPE=INV;END=10767;SVLEN=62	.	1
gi|56160436|ref|AC_000005.1|	10816	sim_inv_19	C	<INV>	.	PASS	SVTYPE=INV;END=11044;SVLEN=228	.	1
gi|56160436|ref|AC_000005.1|	11074	sim_sv_indel_18	GTCGGTGGTTACTCGATTTAATTAACATTCTGCAGAGCATTGTGGTTCAGGAACGCAGTCTTAGTTTGGCAGAC	G	.	PASS	SVTYPE=DEL;SVLEN=-73	.	1
gi|56160436|ref|AC_000005.1|	11180	sim_inv_20	T	<INV>	.	PASS	SVTYPE=INV;END=11279;SVLEN=99	.	1
gi|56160436|ref|AC_000005.1|	11360	sim_sv_indel_19	GCTAAGCGACAAAGAGCTTATGCATAGCTTACAAAGGGCGCTGACGGGAGCAGGAACAGAGGACGAGTCGTTCTTTGATATGGGCGCAGACCTACGGTGGCAGCCAAGCGCTCGCGCTTTGGAGGCAGCTGGAGTGGCGTCTGCTGACGTCACTGGCGATGACGATGACGAAGACCAGTACGAGGACTGATCGGCCGTACC	G	.	PASS	SVTYPE=DEL;SVLEN=-200	.	1
gi|56160436|ref|AC_000005.1|	11562	sim_sv_indel_20	TTTGTTAGATGCAGCGACCGGCGATCATCGCGGAGAGGGCTCCTAACCTGGATCCCGCGGTTT	T	.	PASS	SVTYPE=DEL;SVLEN=-62	.	1
gi|56160436|ref|AC_000005.1|	11650	sim_inv_21	T	<INV>	.	PASS	SVTYPE=INV;END=11897;SVLEN=247	.	1
gi|56160436|ref|AC_000005.1|	11929	sim_inv_22	T	<INV>	.	PASS	SVTYPE=INV;END=12129;SVLEN=200	.	1
gi|56160436|ref|AC_000005.1|	12152	sim_inv_23	T	<INV>	.	PASS	SVTYPE=INV;END=12254;SVLEN=102	.	1
gi|56160436|ref|AC_000005.1|	12351	sim_sv_indel_21	A	ACCCTGAGCTGCCCCGCTTACCTCTTAGCGAGCACGATTTGCACGGGATGCGTGACAAA	.	PASS	SVTYPE=INS;SVLEN=58	.	1
gi|56160436|ref|AC_000005.1|	12356	sim_inv_24	G	<INV>	.	PASS	SVTYPE=INV;END=12376;SVLEN=20	.	1
gi|56160436|ref|AC_000005.1|	12388	sim_inv_25	T	<INV>	.	PASS	SVTYPE=INV;END=12553;SVLEN=165	.	1
gi|56160436|ref|AC_000005.1|	12576	sim_sv_indel_22	C	CGTGGTAATCAAGAATACGCTGATCCTGAATGTAAACATTCACGTCGTTTATAACGCAGAGATCAAGGTAAATATTAATCGGAGAGTCGGATGCGGTGCCCCATAAAGATGGATTTTTCACGGGATACCCAGCCGCGAGTTGGGGCTGATGGTGGCTATGCACACCTATGACATAATCCTGTCGCGACGCTGACAAATATGCAGGAGGGTTCCGTAAGTCGAC	.	PASS	SVTYPE=INS;SVLEN=222	.	1
gi|56160436|ref|AC_000005.1|	12603	sim_dup_15	G	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=135;END=12738;TARGETPOS=gi|56160436|ref|AC_000005.1|:12790	.	1
gi|56160436|ref|AC_000005.1|	12834	sim_inv_26	A	<INV>	.	PASS	SVTYPE=INV;END=12935;SVLEN=101	.	1
gi|56160436|ref|AC_000005.1|	12973	sim_inv_27	C	<INV>	.	PASS	SVTYPE=INV;END=13050;SVLEN=77	.	1
gi|56160436|ref|AC_000005.1|	13076	sim_inv_28	A	<INV>	.	PASS	SVTYPE=INV;END=13325;SVLEN=249	.	1
gi|56160436|ref|AC_000005.1|	13396	sim_sv_indel_23	GAGGCGCGCGGTGGAACTGCAGACAGTGGCTTTTCCTGAGACACCACCTCCCTCTTACGAAACCGTGATGGCAGCGGCGCCACCCTACGTGCCTCCCCGCTATTTGGGTCCTACGGAGGGAAGAAACAGTATCCGTTACTCGGAATTGTCACCGTTGTACGATACCACTCGAGTGTACTTGGTGGACAACAAGTCTTCTGACATTGCTTCATTGAATTACCAGAATGATCACAGCAACTTTTTAACCACTGTA	G	.	PASS	SVTYPE=DEL;SVLEN=-252	.	1
gi|56160436|ref|AC_000005.1|	13697	sim_sv_indel_24	AACTTTGATGAAAGGTCTAGATGGGGTGGAGATTTAAAAACCATCTTACATACCA	A	.	PASS	SVTYPE=DEL;SVLEN=-54	.	1
gi|56160436|ref|AC_000005.1|	13793	sim_inv_29	A	<INV>	.	PASS	SVTYPE=INV;END=13848;SVLEN=55	.	1
gi|56160436|ref|AC_000005.1|	13872	sim_dup_16	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=126;END=13998;TARGETPOS=gi|56160436|ref|AC_000005.1|:14142	.	1
gi|56160436|ref|AC_000005.1|	14150	sim_inv_30	A	<INV>	.	PASS	SVTYPE=INV;END=14302;SVLEN=152	.	1
gi|56160436|ref|AC_000005.1|	14359	sim_inv_31	A	<INV>	.	PASS	SVTYPE=INV;END=14609;SVLEN=250	.	1
gi|56160436|ref|AC_000005.1|	14664	sim_inv_32	G	<INV>	.	PASS	SVTYPE=INV;END=14875;SVLEN=211	.	1
gi|56160436|ref|AC_000005.1|	14909	sim_dup_17	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=68;END=14977;TARGETPOS=gi|56160436|ref|AC_000005.1|:15210	.	1
gi|56160436|ref|AC_000005.1|	15300	sim_sv_indel_25	A	ATAACACCACCCACTTGTCCTCCTAATTCCGGGCTTATCATCTCTGCGGCGCGGAGAACCGGTCGCCTCCCCTCTAATCTAGCTAGAAAGCAGCCCTTGATAGTTAGATAGTTTTCCCAGTGCGCCTCTCATGTTGACCCACGACATATATTTCGCGATATCGACTTTGACAAAGAAGTCTCTCCAGCGGATTAGTTATAGTCTACAACCCCTCTATCGTTAATCGGCCCGTTCAGCGCGGA	.	PASS	SVTYPE=INS;SVLEN=241	.	1
gi|56160436|ref|AC_000005.1|	15314	sim_sv_indel_26	C	CCCGTTCCAGCTGGTCGGAATATCCGGAGTTCTTCCACTACTGGATTGTAGTGGTCCCGTCAAACTCACACATTATTTCATCTACTC	.	PASS	SVTYPE=INS;SVLEN=86	.	1
gi|56160436|ref|AC_000005.1|	15344	sim_dup_18	C	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=227;END=15571;TARGETPOS=gi|56160436|ref|AC_000005.1|:15619	.	1
gi|56160436|ref|AC_000005.1|	15776	sim_inv_33	A	<INV>	.	PASS	SVTYPE=INV;END=15815;SVLEN=39	.	1
gi|56160436|ref|AC_000005.1|	15854	sim_dup_19	G	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=180;END=16034;TARGETPOS=gi|56160436|ref|AC_000005.1|:16119	.	1
gi|56160436|ref|AC_000005.1|	16155	sim_inv_34	T	<INV>	.	PASS	SVTYPE=INV;END=16260;SVLEN=105	.	1
gi|56160436|ref|AC_000005.1|	16276	sim_sv_indel_27	A	AGCCCTAGTAACACACGCTTTGCTAACGGTTTGTTTTGACCCAGTCATGTATCCGGACTCGCGCT	.	PASS	SVTYPE=INS;SVLEN=64	.	1
gi|56160436|ref|AC_000005.1|	16323	sim_inv_35	T	<INV>	.	PASS	SVTYPE=INV;END=16496;SVLEN=173	.	1
gi|56160436|ref|AC_000005.1|	16499	sim_sv_indel_28	A	AACTGATTATACCTCCAAGGTACTCTCAAGCACACTGTAATGCCTACACGATAAGTCGAGTCGAGCCAGGACGGAGCGATTATAGGATTTCAATAATTGATGCCCAATTT	.	PASS	SVTYPE=INS;SVLEN=109	.	1
gi|56160436|ref|AC_000005.1|	16506	sim_inv_36	T	<INV>	.	PASS	SVTYPE=INV;END=16553;SVLEN=47	.	1
gi|56160436|ref|AC_000005.1|	16607	sim_dup_20	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=38;END=16645;TARGETPOS=gi|56160436|ref|AC_000005.1|:16758	.	1
gi|56160436|ref|AC_000005.1|	16763	sim_inv_37	T	<INV>	.	PASS	SVTYPE=INV;END=16866;SVLEN=103	.	1
gi|56160436|ref|AC_000005.1|	16923	sim_dup_21	G	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=118;END=17041;TARGETPOS=gi|56160436|ref|AC_000005.1|:17321	.	1
gi|56160436|ref|AC_000005.1|	17333	sim_dup_22	C	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=223;END=17556;TARGETPOS=gi|56160436|ref|AC_000005.1|:17820	.	1
gi|56160436|ref|AC_000005.1|	17846	sim_inv_38	A	<INV>	.	PASS	SVTYPE=INV;END=18032;SVLEN=186	.	1
gi|56160436|ref|AC_000005.1|	18034	sim_dup_23	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=149;END=18183;TARGETPOS=gi|56160436|ref|AC_000005.1|:18315	.	1
gi|56160436|ref|AC_000005.1|	18336	sim_inv_39	T	<INV>	.	PASS	SVTYPE=INV;END=18607;SVLEN=271	.	1
gi|56160436|ref|AC_000005.1|	18613	sim_inv_40	G	<INV>	.	PASS	SVTYPE=INV;END=18765;SVLEN=152	.	1
gi|56160436|ref|AC_000005.1|	18801	sim_inv_41	G	<INV>	.	PASS	SVTYPE=INV;END=18959;SVLEN=158	.	1
gi|56160436|ref|AC_000005.1|	19010	sim_sv_indel_29	T	TGTGTGCGTAGCGGCAGCCTCGATACATGCGTTTCCAGATGTCACCCCTAATTCCCCAGATCCTCTAATTTGTATCTCTCGACACCTCGCGTAATGAATCTCAGTGACAAAATAGCGTACGAAAGAATGCGGCCAATAAAAAACAATGTGCAACGTGGAAACTCAACTCGGGGCAGAGTAACGTTTGAGCGTTCTCCACAGTCGAACAGTCGTGTGTTTGCAGTTTCGAGACAAGAATACAAACCTAGGT	.	PASS	SVTYPE=INS;SVLEN=249	.	1
gi|56160436|ref|AC_000005.1|	19031	sim_dup_24	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=134;END=19165;TARGETPOS=gi|56160436|ref|AC_000005.1|:19269	.	1
gi|56160436|ref|AC_000005.1|	19279	sim_dup_25	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=201;END=19480;TARGETPOS=gi|56160436|ref|AC_000005.1|:19750	.	1
gi|56160436|ref|AC_000005.1|	19819	sim_sv_indel_30	TCCTCCGTGAGTTGGCCTGGAAATGACCGTTTGCTAACCCCAAATGAATTTGAAATAAAGCGTTCTGTGGATGGGGAGGGATACAATGTGGCCCAATGCA	T	.	PASS	SVTYPE=DEL;SVLEN=-99	.	1
gi|56160436|ref|AC_000005.1|	19956	sim_dup_26	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=280;END=20236;TARGETPOS=gi|56160436|ref|AC_000005.1|:20333	.	1
gi|56160436|ref|AC_000005.1|	20339	sim_inv_42	C	<INV>	.	PASS	SVTYPE=INV;END=20613;SVLEN=274	.	1
gi|56160436|ref|AC_000005.1|	20674	sim_sv_indel_31	TGGGGGCGTACACTGGCTGGCTTTTGGATGGAACCCCAAATCGCACACTTGCTATTTATTCGATCCATTTGGATTTTCTGATCAACGACT	T	.	PASS	SVTYPE=DEL;SVLEN=-89	.	1
gi|56160436|ref|AC_000005.1|	20800	sim_sv_indel_32	GCGCCGTAGTGCGCTAGCGGCCACTAAAGACCGATGCGTTACCCTAGAAAAGTCAACCCAAACTGTACAAGGACCGTTTTCTGCAGCGTGCGGCCTGTTTTGTTGTATGTTCTTACACGCTTTTACTCACTGGCCTGACCATCCAATGGATAAAAATCCCACTATGGACCTACTTACTGGGGTGCCTAATTGT	G	.	PASS	SVTYPE=DEL;SVLEN=-192	.	1
gi|56160436|ref|AC_000005.1|	21003	sim_sv_indel_33	G	GCAGAATAGCCATTGGATGAGCGACATACAGAACATCGACGTGGCCTTCCGGTCTCTGGACTACGGTTTGTGCGGTTAGGATCTCCCCCCCACGTGAGGTCTTGTACTATGGCGGTTGAATCACACCAGTTATAACAGCCGGTGTCACTAGATAACGCGGCTACGTAACTAATAAGGCACGCCTAGCCGCTTAGCCCGCA	.	PASS	SVTYPE=INS;SVLEN=199	.	1
gi|56160436|ref|AC_000005.1|	21157	sim_dup_27	A	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=228;END=21385;TARGETPOS=gi|56160436|ref|AC_000005.1|:21599	.	1
gi|56160436|ref|AC_000005.1|	21339	sim_snp_0	T	A	.	PASS	.	.	1
gi|56160436|ref|AC_000005.1|	21602	sim_dup_28	C	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=172;END=21774;TARGETPOS=gi|56160436|ref|AC_000005.1|:21968	.	1
gi|56160436|ref|AC_000005.1|	21975	sim_dup_29	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=45;END=22020;TARGETPOS=gi|56160436|ref|AC_000005.1|:22309	.	1
gi|56160436|ref|AC_000005.1|	22326	sim_dup_30	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=177;END=22503;TARGETPOS=gi|56160436|ref|AC_000005.1|:22566	.	1
gi|56160436|ref|AC_000005.1|	22582	sim_inv_43	C	<INV>	.	PASS	SVTYPE=INV;END=22783;SVLEN=201	.	1
gi|56160436|ref|AC_000005.1|	22861	sim_dup_31	A	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=70;END=22931;TARGETPOS=gi|56160436|ref|AC_000005.1|:23181	.	1
gi|56160436|ref|AC_000005.1|	23193	sim_inv_44	G	<INV>	.	PASS	SVTYPE=INV;END=23231;SVLEN=38	.	1
gi|56160436|ref|AC_000005.1|	23263	sim_sv_indel_34	TGGAAGAGGTGCCTAAAATTTTTGAAGGTTTAGGTCG	T	.	PASS	SVTYPE=DEL;SVLEN=-36	.	1
gi|56160436|ref|AC_000005.1|	23348	sim_sv_indel_35	T	TTGACCTATCTCACGGTGTCTGTAGTAATCGGGTCGCTTCAGAGATGGGACTCG	.	PASS	SVTYPE=INS;SVLEN=53	.	1
gi|56160436|ref|AC_000005.1|	23375	sim_sv_indel_36	ACTGGAAGGTGACAATGCCCGCCTGGCAGTTTTAAAGCGCAATAT	A	.	PASS	SVTYPE=DEL;SVLEN=-44	.	1
gi|56160436|ref|AC_000005.1|	23434	sim_inv_45	T	<INV>	.	PASS	SVTYPE=INV;END=23490;SVLEN=56	.	1
gi|56160436|ref|AC_000005.1|	23638	sim_inv_46	A	<INV>	.	PASS	SVTYPE=INV;END=23902;SVLEN=264	.	1
gi|56160436|ref|AC_000005.1|	23946	sim_dup_32	G	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=72;END=24018;TARGETPOS=gi|56160436|ref|AC_000005.1|:24066	.	1
gi|56160436|ref|AC_000005.1|	24078	sim_snp_1	G	C	.	PASS	.	.	1
gi|56160436|ref|AC_000005.1|	24132	sim_dup_33	A	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=36;END=24168;TARGETPOS=gi|56160436|ref|AC_000005.1|:24407	.	1
gi|56160436|ref|AC_000005.1|	24349	sim_snp_2	G	T	.	PASS	.	.	1
gi|56160436|ref|AC_000005.1|	24422	sim_dup_34	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=103;END=24525;TARGETPOS=gi|56160436|ref|AC_000005.1|:24635	.	1
gi|56160436|ref|AC_000005.1|	24638	sim_dup_35	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=50;END=24688;TARGETPOS=gi|56160436|ref|AC_000005.1|:24900	.	1
gi|56160436|ref|AC_000005.1|	24922	sim_sv_indel_37	G	GCTGTTAGCGGTCCCAACCTCGTACGTCGTGTCAACTCGCTCGGTTCGCATCCAGTCAGTGCCTTTTCTACTGCGAAAGACTTATTCCACGCAACGTTGGAAGTCTACTGATTAGTAGGAATAGTGGCATGCTCCAGGGTTCGCTATAGCAGTATATTCACCATGGTTTCAAAGGGCACGCACCTGTTAACTCGAACCCGTGCAGTCGGGTAAACATCCGAGCCGCGCCCCGACGTA	.	PASS	SVTYPE=INS;SVLEN=236	.	1
gi|56160436|ref|AC_000005.1|	24923	sim_dup_36	A	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=281;END=25204;TARGETPOS=gi|56160436|ref|AC_000005.1|:25255	.	1
gi|56160436|ref|AC_000005.1|	25261	sim_inv_47	T	<INV>	.	PASS	SVTYPE=INV;END=25422;SVLEN=161	.	1
gi|56160436|ref|AC_000005.1|	25442	sim_inv_48	C	<INV>	.	PASS	SVTYPE=INV;END=25701;SVLEN=259	.	1
gi|56160436|ref|AC_000005.1|	25710	sim_dup_37	G	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=208;END=25918;TARGETPOS=gi|56160436|ref|AC_000005.1|:26201	.	1
gi|56160436|ref|AC_000005.1|	26212	sim_sv_indel_38	TCTGTTTACTTCAATCCTTTTTCGGGCTCGCCTGGACACTATCCTGACGCCTTCATACCCAACTTTGACGCAGTGAGTGAATCTGTGGATGGCTATGATTAATGTCTAATGGAGCGGCTGACAGAGCGCGGCTGCGACATTTAGACCACTGTCGCCAACCTCACTGCTTTGCTCGAGACATCTGTGTCTTTACCTACTTTGAGCTTCCAGAGGAGCACCCCCAGGGGCCAGCTCACGGTGTCAGAATAACAGTTGAAAAAGGAATTGA	T	.	PASS	SVTYPE=DEL;SVLEN=-267	.	1
gi|56160436|ref|AC_000005.1|	26497	sim_sv_indel_39	T	TCGTCAGACAGTACATTTGAGAACTCTTACTAGTTGAGAGTCCACACGAGCTCGAGCGAATTGCAAAAGCCGAAACCTAAAAGAGGGGCAGGCGGATTAATGGATCGAGATTATCGCCGTAATGCATTTTTACCAGCCCGTTCGGCTGGTT	.	PASS	SVTYPE=INS;SVLEN=150	.	1
gi|56160436|ref|AC_000005.1|	26524	sim_sv_indel_40	A	AGAGAGCGGGCCGCGTTTCTTACTAATCACTCCATCTGGACCAGACTAAAATCGCGTCCTTATAGTTCCGCATCGCGCGCAATCGG	.	PASS	SVTYPE=INS;SVLEN=85	.	1
gi|56160436|ref|AC_000005.1|	26536	sim_sv_indel_41	GAAATACTATATTAACTTTATATTGCATTTGTCCTGTTCCCGGATTACATGAAGATTTCTGCTGTCATTTGTGTGCTGAATTTAATCATCTGTAGTGGCGCTGTACCGCCTGAAGAAGA	G	.	PASS	SVTYPE=DEL;SVLEN=-118	.	1
gi|56160436|ref|AC_000005.1|	26780	sim_dup_38	C	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=70;END=26850;TARGETPOS=gi|56160436|ref|AC_000005.1|:27038	.	1
gi|56160436|ref|AC_000005.1|	27123	sim_inv_49	T	<INV>	.	PASS	SVTYPE=INV;END=27172;SVLEN=49	.	1
gi|56160436|ref|AC_000005.1|	27179	sim_sv_indel_42	ACTTTTGCATAGGAGCTGCACGTACTAGCCCCTGTCAACAGCATTGGAATTTAACTTACTGTCCCCCACCAGTGTCGCCCTTTGTGATCAATACTGAATATTTAGACTATAATCCCTTGCTTGCTTACGGCGGTCTCGCAGCTCTTATTTTATTCCTGATTTCTAACTTGTTTCTAGTGCAACATTTGTATTCATACTAACAATGCTTTCCATTTTTCTTTTATTTCTCTTTTCTTTACCTTCTGGCTTGTATGCTCAAACAGCCGAAAGACCACTAA	A	.	PASS	SVTYPE=DEL;SVLEN=-277	.	1
gi|56160436|ref|AC_000005.1|	27484	sim_sv_indel_43	T	TAATGTAGTCCCATACGTCATCGGCAGACGTCACTACCTCACGGGCGTGACCTATTGAACGATGGTCGGAATACGCTGCCGACGAAGTGGGATACGAGCCTTTCTCTAGCGGAGTCTGGTCTTTG	.	PASS	SVTYPE=INS;SVLEN=124	.	1
gi|56160436|ref|AC_000005.1|	27488	sim_inv_50	C	<INV>	.	PASS	SVTYPE=INV;END=27509;SVLEN=21	.	1
gi|56160436|ref|AC_000005.1|	27577	sim_sv_indel_44	T	TCTATAATACATCAATGATAGGGCAACGACAGATTACCTCTCTTCGGGACTGGGAGTATTCAATGCGGCAAGTACACCCCGAATACGGTCCAGTAGGTGTTTTGTA	.	PASS	SVTYPE=INS;SVLEN=105	.	1
gi|56160436|ref|AC_000005.1|	27633	sim_dup_39	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=278;END=27911;TARGETPOS=gi|56160436|ref|AC_000005.1|:28180	.	1
gi|56160436|ref|AC_000005.1|	28209	sim_inv_51	G	<INV>	.	PASS	SVTYPE=INV;END=28505;SVLEN=296	.	1
gi|56160436|ref|AC_000005.1|	28557	sim_dup_40	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=280;END=28837;TARGETPOS=gi|56160436|ref|AC_000005.1|:29012	.	1
gi|56160436|ref|AC_000005.1|	29021	sim_dup_41	C	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=230;END=29251;TARGETPOS=gi|56160436|ref|AC_000005.1|:29412	.	1
gi|56160436|ref|AC_000005.1|	29414	sim_sv_indel_45	A	ACGTATACCCGGTTTTTGCTGCGTTACCGATCCATGGACGCATAGTTTTCAGCGTGGCGGATACACCCCTTAATATTTTAAGTAGGTAAAG	.	PASS	SVTYPE=INS;SVLEN=90	.	1
gi|56160436|ref|AC_000005.1|	29427	sim_inv_52	C	<INV>	.	PASS	SVTYPE=INV;END=29476;SVLEN=49	.	1
gi|56160436|ref|AC_000005.1|	29524	sim_sv_indel_46	T	TCTAAACTTACCTGCGTTTCACATCGGACAGCTCGGATGAGTAGACGTTAGGCACGAAAGCTCCCCTCCGTACATGCACTCAGAGACCGTCATTGCTCCAGACCGGGGGTTCCAAACGTCATATTACTCAATTAGAGACGCGTGGGGATGCAGTTATCGGTACGCTCTGCACTGCATGCCTTCCTTGGATTCCCGTCACCACTGTTATTAAGCGTCCATCTCGCCAACTAGACCGACCGCCTTGACTCGCGGCGGAGAACGGAGGCGCT	.	PASS	SVTYPE=INS;SVLEN=268	.	1
gi|56160436|ref|AC_000005.1|	29558	sim_sv_indel_47	AAAATGGAACCCTTACACTCAAGCTAGGGGACGGAATAAAACTTAATGCCCAAGGTCAACTTACAGCTAGT	A	.	PASS	SVTYPE=DEL;SVLEN=-70	.	1
gi|56160436|ref|AC_000005.1|	29634	sim_dup_42	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=79;END=29713;TARGETPOS=gi|56160436|ref|AC_000005.1|:29824	.	1
gi|56160436|ref|AC_000005.1|	29836	sim_inv_53	A	<INV>	.	PASS	SVTYPE=INV;END=30091;SVLEN=255	.	1
gi|56160436|ref|AC_000005.1|	30098	sim_dup_43	C	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=184;END=30282;TARGETPOS=gi|56160436|ref|AC_000005.1|:30574	.	1
gi|56160436|ref|AC_000005.1|	30609	sim_dup_44	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=36;END=30645;TARGETPOS=gi|56160436|ref|AC_000005.1|:30872	.	1
gi|56160436|ref|AC_000005.1|	30881	sim_inv_54	A	<INV>	.	PASS	SVTYPE=INV;END=31090;SVLEN=209	.	1
gi|56160436|ref|AC_000005.1|	31106	sim_dup_45	C	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=40;END=31146;TARGETPOS=gi|56160436|ref|AC_000005.1|:31376	.	1
gi|56160436|ref|AC_000005.1|	31387	sim_sv_indel_48	C	CGGACGGCGTGCAGGTATGGATGTTTGTGACTGACCCGGAAACCAATGTGAGATACAGCATCTCGGAGCCACATATCGAAGAGCCTGACTAGCACTGAGAATACTTGGGGCGTTAAACGCGCTATTGACATACGGACCTTTAAACA	.	PASS	SVTYPE=INS;SVLEN=145	.	1
gi|56160436|ref|AC_000005.1|	31414	sim_inv_55	A	<INV>	.	PASS	SVTYPE=INV;END=31516;SVLEN=102	.	1
gi|56160436|ref|AC_000005.1|	31520	sim_dup_46	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=84;END=31604;TARGETPOS=gi|56160436|ref|AC_000005.1|:31818	.	1
gi|56160436|ref|AC_000005.1|	31834	sim_inv_56	G	<INV>	.	PASS	SVTYPE=INV;END=31990;SVLEN=156	.	1
gi|56160436|ref|AC_000005.1|	32040	sim_dup_47	A	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=269;END=32309;TARGETPOS=gi|56160436|ref|AC_000005.1|:32396	.	1
gi|56160436|ref|AC_000005.1|	32407	sim_dup_48	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=68;END=32475;TARGETPOS=gi|56160436|ref|AC_000005.1|:32650	.	1
gi|56160436|ref|AC_000005.1|	32784	sim_sv_indel_49	AGCAAATGCATTATCATGAAACTCTTCTATCATCAAACTGCCTGACTGAACCATTCCCAGGTAATTTTCATTCTTCCACTGTTGTATTATTTGAACACACTGATTTTGCAGGTTTAAACCGTGAATATTAAAAAGCTCTGTAAGGGCGCCCTCCACCGCCATCCGCAGGCAGTACTTCATATTTGCTGAAAAAAGTCTGGATCTTCAAACACCTGCAGTAAATTCAGTAGATTTACATTAGGCTCCA	A	.	PASS	SVTYPE=DEL;SVLEN=-246	.	1
gi|56160436|ref|AC_000005.1|	33038	sim_sv_indel_50	GTCTCGCAGCTGACATCTTAATGCCAGTTGTATAAAATCATACAAATCAGAAGCCAGCAGCAAAGAAAGTTCACCTCCAGGTACAAGTTCCGGAGTTCCCACAGAACATACAACTTGCACAAATGGACCCATATTAGTAAGCGTGGCGCCAACGTAGACATCGCGCATAGGAGGAGTTAAATAATGCATTACCAGCAGCCAAAACTCAGG	G	.	PASS	SVTYPE=DEL;SVLEN=-209	.	1
gi|56160436|ref|AC_000005.1|	33318	sim_inv_57	A	<INV>	.	PASS	SVTYPE=INV;END=33541;SVLEN=223	.	1
gi|56160436|ref|AC_000005.1|	33549	sim_dup_49	A	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=170;END=33719;TARGETPOS=gi|56160436|ref|AC_000005.1|:33851	.	1
gi|56160436|ref|AC_000005.1|	33973	sim_inv_58	G	<INV>	.	PASS	SVTYPE=INV;END=34026;SVLEN=53	.	1
