SeqCons
=======

__OPTIONS____________________________________________________________________

VERBOSITY              	NORMAL
OPERATION              	global MSA + consensus

INPUT FILE             	seqs2.fa
OUTPUT READS           	seqs2.align_consensus.txt
OUTPUT CONSENSUS       	

OVERLAP MIN LENGTH     	20
OVERLAP MAX ERR-RATE   	5
OVERLAP MIN COUNT      	3
OVERLAP WINDOW SIZE    	20

K-MER SIZE             	20
K-MER MAX OCCURRENCES  	200

REALIGNMENT BANDWIDTH  	10
REALIGNMENT ENVIRONMENT	20

__LOADING DATA_______________________________________________________________

Loading reads from seqs2.fa...OK

__COMPUTATION________________________________________________________________

Performing consensus computation... OK
Performing realignment... OK

__WRITING RESULT_____________________________________________________________

Writing alignments to seqs2.align_consensus.txt ... OK

Overall time: 0.489169 s

Done.  Have a nice day.
