##fileformat=VCFv4.1
##source=GUSTAF
##reference=adeno.fa
##reads=adeno_modified_reads.fa
##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record (for DUP last position of duplicated sequence)">
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=EVENT,Number=1,Type=String,Description="Event identifier for breakends.">
##INFO=<ID=TARGETPOS,Number=1,Type=String,Description="Target position for duplications (position before inserted sequence).">
##INFO=<ID=BM,Number=1,Type=Integer,Description="Breakpoint Mate: similar breakpoints have same ID">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Number of Supporting Reads/Read Depth for Variant">
##ALT=<ID=INV,Description="Inversion">
##ALT=<ID=DUP,Description="Duplication">
##ALT=<ID=DUP:TANDEM,Description="Tandem Duplication">
##contig=<ID=gi|9632547|ref|NC_002077.1|,length=4718>
##contig=<ID=gi|1234567|,length=1148>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT
gi|9632547|ref|NC_002077.1|	210	.	G	<INV>	.	PASS	SVTYPE=INV;END=280;SVLEN=70;BM=5;DP=1	.	1
gi|9632547|ref|NC_002077.1|	420	.	G	<DEL>	.	PASS	SVTYPE=DEL;END=490;SVLEN=-70;BM=0;DP=1	.	1
gi|9632547|ref|NC_002077.1|	909	.	A	<INS>	.	PASS	SVTYPE=INS;SVLEN=70;BM=1;DP=1	.	1
gi|9632547|ref|NC_002077.1|	1193	.	C	<DEL>	.	PASS	SVTYPE=DEL;END=1262;SVLEN=-69;BM=2;DP=1	.	1
gi|9632547|ref|NC_002077.1|	1468	BND_4_1	G	G[gi|9632547|ref|NC_002077.1|:1821[	.	PASS	SVTYPE=BND;EVENT=Trans4;BM=3;DP=3	.	1
gi|9632547|ref|NC_002077.1|	1469	BND_4_2	G	]gi|9632547|ref|NC_002077.1|:1888]G	.	PASS	SVTYPE=BND;EVENT=Trans4;BM=3;DP=3	.	1
gi|9632547|ref|NC_002077.1|	1820	BND_4_3	G	G[gi|9632547|ref|NC_002077.1|:1889[	.	PASS	SVTYPE=BND;EVENT=Trans4;BM=3;DP=3	.	1
gi|9632547|ref|NC_002077.1|	1821	BND_4_4	C	]gi|9632547|ref|NC_002077.1|:1468]C	.	PASS	SVTYPE=BND;EVENT=Trans4;BM=3;DP=3	.	1
gi|9632547|ref|NC_002077.1|	1888	BND_4_5	A	A[gi|9632547|ref|NC_002077.1|:1469[	.	PASS	SVTYPE=BND;EVENT=Trans4;BM=3;DP=3	.	1
gi|9632547|ref|NC_002077.1|	1889	BND_4_6	G	[gi|9632547|ref|NC_002077.1|:1820[G	.	PASS	SVTYPE=BND;EVENT=Trans4;BM=3;DP=3	.	1
