##fileformat=VCFv4.1
##source=mason_variator
##reference=../input/random.fasta
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=TARGETPOS,Number=1,Type=String,Description="Target position for duplications.">
##ALT=<ID=INV,Description="Inversion">
##ALT=<ID=DUP,Description="Duplication">
##contig=<ID=1,length=10000>
##contig=<ID=2,length=1000>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	simulated
1	28	sim_small_indel_0	T	TT	.	PASS	.	.	0|1
1	55	sim_sv_indel_0	T	TATATAACAGGGAAGAGTGTTACCCAATTCTATACGGAGCTTTCGCGTGCGTTAAGCTCGGCAGTAGA	.	PASS	SVTYPE=INS;SVLEN=67	.	0|1
1	289	sim_trans_0	T	T[1:359[	.	PASS	SVTYPE=BND	.	0|1
1	290	sim_trans_0	G	[1:418[G	.	PASS	SVTYPE=BND	.	0|1
1	358	sim_trans_0	G	G[1:419[	.	PASS	SVTYPE=BND	.	0|1
1	359	sim_trans_0	A	[1:289[A	.	PASS	SVTYPE=BND	.	0|1
1	418	sim_trans_0	G	G[1:290[	.	PASS	SVTYPE=BND	.	0|1
1	419	sim_trans_0	T	[1:358[T	.	PASS	SVTYPE=BND	.	0|1
1	529	sim_sv_indel_1	G	GTTAAGGCGAGAGTACCGTACAGAAGCTTTGAGGATGTCCTGATTGTTGTTTCCAAAGGGTGA	.	PASS	SVTYPE=INS;SVLEN=62	.	1|0
1	647	sim_inv_0	C	<INV>	.	PASS	SVTYPE=INV;END=732;SVLEN=85	.	1|0
1	785	sim_trans_1	C	C[1:871[	.	PASS	SVTYPE=BND	.	0|1
1	786	sim_trans_1	G	[1:927[G	.	PASS	SVTYPE=BND	.	0|1
1	870	sim_trans_1	T	T[1:928[	.	PASS	SVTYPE=BND	.	0|1
1	871	sim_trans_1	C	[1:785[C	.	PASS	SVTYPE=BND	.	0|1
1	927	sim_trans_1	G	G[1:786[	.	PASS	SVTYPE=BND	.	0|1
1	928	sim_trans_1	G	[1:870[G	.	PASS	SVTYPE=BND	.	0|1
1	845	sim_snp_0	C	G,T	.	PASS	.	.	2|1
1	1177	sim_inv_1	A	<INV>	.	PASS	SVTYPE=INV;END=1272;SVLEN=95	.	1|0
1	1400	sim_trans_2	G	G[1:1483[	.	PASS	SVTYPE=BND	.	0|1
1	1401	sim_trans_2	C	[1:1535[C	.	PASS	SVTYPE=BND	.	0|1
1	1482	sim_trans_2	G	G[1:1536[	.	PASS	SVTYPE=BND	.	0|1
1	1483	sim_trans_2	T	[1:1400[T	.	PASS	SVTYPE=BND	.	0|1
1	1535	sim_trans_2	C	C[1:1401[	.	PASS	SVTYPE=BND	.	0|1
1	1536	sim_trans_2	T	[1:1482[T	.	PASS	SVTYPE=BND	.	0|1
1	1566	sim_sv_indel_2	ATGATATCAAACCATGCACGTATTGTACTAGCACAAAGTCGCGTGGGTCCGTGTCCGGCCATAAAACA	A	.	PASS	SVTYPE=DEL;SVLEN=-67	.	0|1
1	2017	sim_inv_2	A	<INV>	.	PASS	SVTYPE=INV;END=2101;SVLEN=84	.	1|0
1	2184	sim_sv_indel_3	TTATAACTGAGTTGAGCCCTTCATTTTTTGTAGCCCCATCACCAGCGCAGTACTATC	T	.	PASS	SVTYPE=DEL;SVLEN=-56	.	1|0
1	2601	sim_inv_3	T	<INV>	.	PASS	SVTYPE=INV;END=2659;SVLEN=58	.	1|0
1	2751	sim_dup_0	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=85;END=2836;TARGETPOS=1:2901	.	0|1
1	3196	sim_sv_indel_4	A	ACGAAAGGCCCACGACGTAAAAAGCCTCCGGGGTGGTCGCGGGTCTCCGCTTCATACAAGAGTTAACGGTA	.	PASS	SVTYPE=INS;SVLEN=70	.	0|1
1	3244	sim_snp_1	T	C,G	.	PASS	.	.	2|1
1	3639	sim_trans_3	T	T[1:3739[	.	PASS	SVTYPE=BND	.	0|1
1	3640	sim_trans_3	C	[1:3816[C	.	PASS	SVTYPE=BND	.	0|1
1	3738	sim_trans_3	G	G[1:3817[	.	PASS	SVTYPE=BND	.	0|1
1	3739	sim_trans_3	G	[1:3639[G	.	PASS	SVTYPE=BND	.	0|1
1	3816	sim_trans_3	A	A[1:3640[	.	PASS	SVTYPE=BND	.	0|1
1	3817	sim_trans_3	T	[1:3738[T	.	PASS	SVTYPE=BND	.	0|1
1	3895	sim_dup_1	A	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=98;END=3993;TARGETPOS=1:4051	.	1|0
1	4365	sim_snp_2	G	A	.	PASS	.	.	1|1
1	4427	sim_sv_indel_5	G	GTTAATCGGCCCGTTCAGCGCGGAGGGAGTGCGGTCGTTGTGCGTTCTAAATGTGTAGATCATT	.	PASS	SVTYPE=INS;SVLEN=63	.	1|0
1	4537	sim_dup_2	C	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=84;END=4621;TARGETPOS=1:4692	.	1|0
1	4833	sim_trans_4	A	A[1:4924[	.	PASS	SVTYPE=BND	.	1|0
1	4834	sim_trans_4	A	[1:4986[A	.	PASS	SVTYPE=BND	.	1|0
1	4923	sim_trans_4	G	G[1:4987[	.	PASS	SVTYPE=BND	.	1|0
1	4924	sim_trans_4	C	[1:4833[C	.	PASS	SVTYPE=BND	.	1|0
1	4986	sim_trans_4	A	A[1:4834[	.	PASS	SVTYPE=BND	.	1|0
1	4987	sim_trans_4	C	[1:4923[C	.	PASS	SVTYPE=BND	.	1|0
1	5015	sim_dup_3	C	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=74;END=5089;TARGETPOS=1:5172	.	1|0
1	5124	sim_small_indel_1	TACCAG	T	.	PASS	.	.	1|0
1	5237	sim_trans_5	T	T[1:5297[	.	PASS	SVTYPE=BND	.	0|1
1	5238	sim_trans_5	A	[1:5392[A	.	PASS	SVTYPE=BND	.	0|1
1	5296	sim_trans_5	A	A[1:5393[	.	PASS	SVTYPE=BND	.	0|1
1	5297	sim_trans_5	G	[1:5237[G	.	PASS	SVTYPE=BND	.	0|1
1	5392	sim_trans_5	T	T[1:5238[	.	PASS	SVTYPE=BND	.	0|1
1	5393	sim_trans_5	C	[1:5296[C	.	PASS	SVTYPE=BND	.	0|1
1	5401	sim_dup_4	A	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=68;END=5469;TARGETPOS=1:5543	.	1|0
1	5618	sim_dup_5	T	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=86;END=5704;TARGETPOS=1:5780	.	0|1
1	5636	sim_small_indel_2	AGTATTG	A	.	PASS	.	.	1|0
1	5805	sim_snp_3	T	A,G	.	PASS	.	.	2|1
1	5974	sim_inv_4	T	<INV>	.	PASS	SVTYPE=INV;END=6050;SVLEN=76	.	0|1
1	6240	sim_inv_5	C	<INV>	.	PASS	SVTYPE=INV;END=6302;SVLEN=62	.	1|0
1	6333	sim_trans_6	T	T[1:6392[	.	PASS	SVTYPE=BND	.	1|0
1	6334	sim_trans_6	A	[1:6475[A	.	PASS	SVTYPE=BND	.	1|0
1	6391	sim_trans_6	T	T[1:6476[	.	PASS	SVTYPE=BND	.	1|0
1	6392	sim_trans_6	C	[1:6333[C	.	PASS	SVTYPE=BND	.	1|0
1	6475	sim_trans_6	G	G[1:6334[	.	PASS	SVTYPE=BND	.	1|0
1	6476	sim_trans_6	C	[1:6391[C	.	PASS	SVTYPE=BND	.	1|0
1	6866	sim_dup_6	G	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=85;END=6951;TARGETPOS=1:7006	.	0|1
1	6980	sim_small_indel_3	G	GTAAT	.	PASS	.	.	1|0
1	7029	sim_dup_7	A	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=52;END=7081;TARGETPOS=1:7173	.	1|0
1	7158	sim_small_indel_4	A	ACGCA	.	PASS	.	.	1|0
1	7615	sim_inv_6	C	<INV>	.	PASS	SVTYPE=INV;END=7697;SVLEN=82	.	0|1
1	7743	sim_sv_indel_6	TTATAGGCTGATCTGGCCGGCATTTCTCGGGGCAACCCAACCTAGTGGATCGATTACGGGATA	T	.	PASS	SVTYPE=DEL;SVLEN=-62	.	0|1
1	7865	sim_small_indel_5	G	GG	.	PASS	.	.	1|0
1	8042	sim_dup_8	A	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=85;END=8127;TARGETPOS=1:8199	.	0|1
1	8070	sim_snp_4	A	G,T	.	PASS	.	.	1|2
1	8537	sim_inv_7	A	<INV>	.	PASS	SVTYPE=INV;END=8631;SVLEN=94	.	1|0
1	8542	sim_small_indel_6	T	TC	.	PASS	.	.	1|0
1	8701	sim_dup_9	A	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=89;END=8790;TARGETPOS=1:8870	.	0|1
1	8857	sim_small_indel_7	CTTAAAT	C	.	PASS	.	.	1|0
1	9183	sim_small_indel_8	CAT	C	.	PASS	.	.	0|1
1	9304	sim_snp_5	T	C,G	.	PASS	.	.	2|1
1	9316	sim_snp_6	G	C,T	.	PASS	.	.	2|1
1	9707	sim_snp_7	G	T	.	PASS	.	.	1|0
1	9707	sim_snp_7	G	T	.	PASS	.	.	0|1
2	139	sim_dup_10	G	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=65;END=204;TARGETPOS=2:299	.	0|1
2	297	sim_snp_8	A	G	.	PASS	.	.	1|0
2	297	sim_snp_8	A	G	.	PASS	.	.	0|1
2	566	sim_trans_7	C	C[2:643[	.	PASS	SVTYPE=BND	.	0|1
2	567	sim_trans_7	T	[2:693[T	.	PASS	SVTYPE=BND	.	0|1
2	642	sim_trans_7	A	A[2:694[	.	PASS	SVTYPE=BND	.	0|1
2	643	sim_trans_7	A	[2:566[A	.	PASS	SVTYPE=BND	.	0|1
2	693	sim_trans_7	C	C[2:567[	.	PASS	SVTYPE=BND	.	0|1
2	694	sim_trans_7	T	[2:642[T	.	PASS	SVTYPE=BND	.	0|1
2	840	sim_trans_8	C	C[2:907[	.	PASS	SVTYPE=BND	.	0|1
2	841	sim_trans_8	T	[2:978[T	.	PASS	SVTYPE=BND	.	0|1
2	906	sim_trans_8	C	C[2:979[	.	PASS	SVTYPE=BND	.	0|1
2	907	sim_trans_8	T	[2:840[T	.	PASS	SVTYPE=BND	.	0|1
2	978	sim_trans_8	G	G[2:841[	.	PASS	SVTYPE=BND	.	0|1
2	979	sim_trans_8	A	[2:906[A	.	PASS	SVTYPE=BND	.	0|1
