// ==========================================================================
//                 SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2024, Knut Reinert, FU Berlin
// All rights reserved.
//
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// modification, are permitted provided that the following conditions are met:
//
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// ==========================================================================
// Author: Manuel Holtgrewe <manuel.holtgrewe@fu-berlin.de>
// ==========================================================================
// Tests for the SeqAn module store.
// ==========================================================================

#include <seqan/basic.h>
#include "test_store_io.h"

SEQAN_BEGIN_TESTSUITE(test_store)
{
    // the UCSC knownGene format
    SEQAN_CALL_TEST(test_store_io_read_ucsc_known_genes);
    SEQAN_CALL_TEST(test_store_io_read_ucsc_known_genes_and_isoforms);
    SEQAN_CALL_TEST(test_store_io_write_ucsc_known_genes);

    // the gff format
    SEQAN_CALL_TEST(test_store_io_read_gff);
    SEQAN_CALL_TEST(test_store_io_write_gff);

    // the gtf format
    SEQAN_CALL_TEST(test_store_io_read_gtf);
    SEQAN_CALL_TEST(test_store_io_write_gtf);

    // Tests for the AMOS format.
    SEQAN_CALL_TEST(test_store_io_readwrite_amos);
    SEQAN_CALL_TEST(test_store_io_read_amos);
    SEQAN_CALL_TEST(test_store_io_write_amos);

    // Tests for the SAM/BAM format.
    SEQAN_CALL_TEST(test_store_io_sam);
    SEQAN_CALL_TEST(test_store_io_sam2);
    SEQAN_CALL_TEST(test_store_io_split_sam);
#if SEQAN_HAS_ZLIB
    SEQAN_CALL_TEST(test_store_io_read_bam);
#endif  // #if SEQAN_HAS_ZLIB
}
SEQAN_END_TESTSUITE
