MASON VARIANT MATERIALIZER
==========================

__OPTIONS____________________________________________________________________

MASON MATERIALIZER OPTIONS
--------------------------

VERBOSITY               	NORMAL

SEED                    	0
METHYLATION SEED        	0

OUTPUT FILE             	materializer.random_var2.fasta
BREAKPOINT TSV OUT      	
METHYLATION LEVEL INPUT 	random_meth1.fasta
METHYLATION LEVEL OUTPUT	materializer.random_meth2.fasta

HAPLOTYPE NAME SEP      	/

MATERIALIZER OPTIONS
  VERBOSITY         	NORMAL
  REFERENCE FASTA   	../input/random.fasta
  VARIANTS VCF      	random_var2.vcf

METHYLATION LEVELS OPTIONS
  VERBOSITY      	NORMAL

  ENABLED	YES

  MEDIAN CG	0.6
  STDDEV CG	0.03
  MEDIAN CHG	0.08
  STDDEV CHG	0.008
  MEDIAN CHH	0.05
  STDDEV CHH	0.005

__INITIALIZATION_____________________________________________________________

Opening files... OK

__MATERIALIZING______________________________________________________________

Materializing... 1/1 1/2 2/1 2/2 DONE

Done materializing VCF file.
