##fileformat=VCFv4.1
##source=GUSTAF
##reference=adeno.fa
##reads=adeno_modified_reads_mates1.fa
##reads=adeno_modified_reads_mates2.fa
##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record (for DUP last position of duplicated sequence)">
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=EVENT,Number=1,Type=String,Description="Event identifier for breakends.">
##INFO=<ID=TARGETPOS,Number=1,Type=String,Description="Target position for duplications (position before inserted sequence).">
##INFO=<ID=BM,Number=1,Type=Integer,Description="Breakpoint Mate: similar breakpoints have same ID">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Number of Supporting Reads/Read Depth for Variant">
##ALT=<ID=INV,Description="Inversion">
##ALT=<ID=DUP,Description="Duplication">
##ALT=<ID=DUP:TANDEM,Description="Tandem Duplication">
##contig=<ID=gi|9632547|ref|NC_002077.1|,length=4718>
##contig=<ID=gi|1234567|,length=1148>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT
gi|9632547|ref|NC_002077.1|	3569	.	T	<DEL>	.	PASS	SVTYPE=DEL;END=3709;SVLEN=-140;BM=0;DP=1	.	1
