BLASTN 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Test
         (567 letters)

Database: ecoli.nt 
           400 sequences; 4,662,239 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AE000111.1|AE000111 Escherichia coli K-12 MG1655 section 1 of...   278   5e-75
gb|AE000440.1|AE000440 Escherichia coli K-12 MG1655 section 330 ...    32   0.52 
gb|AE000132.1|AE000132 Escherichia coli K-12 MG1655 section 22 o...    32   0.52 
gb|AE000485.1|AE000485 Escherichia coli K-12 MG1655 section 375 ...    30   2.0  
gb|AE000387.1|AE000387 Escherichia coli K-12 MG1655 section 277 ...    30   2.0  
gb|AE000295.1|AE000295 Escherichia coli K-12 MG1655 section 185 ...    30   2.0  
gb|AE000279.1|AE000279 Escherichia coli K-12 MG1655 section 169 ...    30   2.0  
gb|AE000167.1|AE000167 Escherichia coli K-12 MG1655 section 57 o...    30   2.0  
gb|AE000117.1|AE000117 Escherichia coli K-12 MG1655 section 7 of...    30   2.0  
gb|AE000115.1|AE000115 Escherichia coli K-12 MG1655 section 5 of...    30   2.0  
gb|AE000510.1|AE000510 Escherichia coli K-12 MG1655 section 400 ...    28   8.1  
gb|AE000488.1|AE000488 Escherichia coli K-12 MG1655 section 378 ...    28   8.1  
gb|AE000482.1|AE000482 Escherichia coli K-12 MG1655 section 372 ...    28   8.1  
gb|AE000463.1|AE000463 Escherichia coli K-12 MG1655 section 353 ...    28   8.1  
gb|AE000462.1|AE000462 Escherichia coli K-12 MG1655 section 352 ...    28   8.1  
gb|AE000441.1|AE000441 Escherichia coli K-12 MG1655 section 331 ...    28   8.1  
gb|AE000399.1|AE000399 Escherichia coli K-12 MG1655 section 289 ...    28   8.1  
gb|AE000371.1|AE000371 Escherichia coli K-12 MG1655 section 261 ...    28   8.1  
gb|AE000332.1|AE000332 Escherichia coli K-12 MG1655 section 222 ...    28   8.1  
gb|AE000313.1|AE000313 Escherichia coli K-12 MG1655 section 203 ...    28   8.1  
gb|AE000269.1|AE000269 Escherichia coli K-12 MG1655 section 159 ...    28   8.1  
gb|AE000230.1|AE000230 Escherichia coli K-12 MG1655 section 120 ...    28   8.1  
gb|AE000190.1|AE000190 Escherichia coli K-12 MG1655 section 80 o...    28   8.1  
gb|AE000183.1|AE000183 Escherichia coli K-12 MG1655 section 73 o...    28   8.1  
gb|AE000161.1|AE000161 Escherichia coli K-12 MG1655 section 51 o...    28   8.1  
gb|AE000155.1|AE000155 Escherichia coli K-12 MG1655 section 45 o...    28   8.1  
gb|AE000151.1|AE000151 Escherichia coli K-12 MG1655 section 41 o...    28   8.1  
gb|AE000149.1|AE000149 Escherichia coli K-12 MG1655 section 39 o...    28   8.1  

>gb|AE000111.1|AE000111 Escherichia coli K-12 MG1655 section 1 of 400 of the complete
           genome
          Length = 10596

 Score =  278 bits (140), Expect = 5e-75
 Identities = 140/140 (100%)
 Strand = Plus / Plus

                                                                       
Query: 421 aggcaggggcaggtggccaccgtcctctctgcccccgccaaaatcaccaaccacctggtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aggcaggggcaggtggccaccgtcctctctgcccccgccaaaatcaccaaccacctggtg 480

                                                                       
Query: 481 gcgatgattgaaaaaaccattagcggccaggatgctttacccaatatcagcgatgccgaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcgatgattgaaaaaaccattagcggccaggatgctttacccaatatcagcgatgccgaa 540

                               
Query: 541 cgtatttttgccgaactttt 560
           ||||||||||||||||||||
Sbjct: 541 cgtatttttgccgaactttt 560



 Score =  182 bits (92), Expect = 2e-46
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                       
Query: 210 cattaccaccaccatcaccattaccacaggtaacggtgcgggctgacgcgtacaggaaac 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 cattaccaccaccatcaccattaccacaggtaacggtgcgggctgacgcgtacaggaaac 269

                                           
Query: 270 acagaaaaaagcccgcacctgacagtgcgggc 301
           ||||||||||||||||||||||||||||||||
Sbjct: 270 acagaaaaaagcccgcacctgacagtgcgggc 301



 Score =  119 bits (60), Expect = 3e-27
 Identities = 71/74 (95%), Gaps = 3/74 (4%)
 Strand = Plus / Plus

                                                                       
Query: 94  tataggcatagcgcacagacagataaaaattacagagtaccttacaacatccatgaaacg 153
           ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||
Sbjct: 141 tataggcatagcgcacagacagataaaaattacagagtac---acaacatccatgaaacg 197

                         
Query: 154 cattagcaccacca 167
           ||||||||||||||
Sbjct: 198 cattagcaccacca 211



 Score = 97.6 bits (49), Expect = 1e-20
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                      
Query: 1  agcttttcattctgactgcaacgggcaatatgtctctgtgtggattnnnnnnngagtgtc 60
          ||||||||||||||||||||||||||||||||||||||||||||||       |||||||
Sbjct: 1  agcttttcattctgactgcaacgggcaatatgtctctgtgtggattaaaaaaagagtgtc 60

                    
Query: 61 tgatagcagc 70
          ||||||||||
Sbjct: 61 tgatagcagc 70



 Score = 56.0 bits (28), Expect = 4e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 350 acgaggtaacaaccatgcgagtgttgaa 377
           ||||||||||||||||||||||||||||
Sbjct: 323 acgaggtaacaaccatgcgagtgttgaa 350



 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 274 aaaaaagcccgcac 287
           ||||||||||||||
Sbjct: 307 aaaaaagcccgcac 294


>gb|AE000440.1|AE000440 Escherichia coli K-12 MG1655 section 330 of 400 of the complete
            genome
          Length = 15529

 Score = 32.2 bits (16), Expect = 0.52
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                            
Query: 496  accattagcggccagg 511
            ||||||||||||||||
Sbjct: 2689 accattagcggccagg 2674


>gb|AE000132.1|AE000132 Escherichia coli K-12 MG1655 section 22 of 400 of the complete genome
          Length = 10167

 Score = 32.2 bits (16), Expect = 0.52
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 529  agcgatgccgaacgta 544
            ||||||||||||||||
Sbjct: 3468 agcgatgccgaacgta 3483


>gb|AE000485.1|AE000485 Escherichia coli K-12 MG1655 section 375 of 400 of the complete genome
          Length = 13096

 Score = 30.2 bits (15), Expect = 2.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                            
Query: 186   tttcgatcagtttta 200
             |||||||||||||||
Sbjct: 12887 tttcgatcagtttta 12901


>gb|AE000387.1|AE000387 Escherichia coli K-12 MG1655 section 277 of 400 of the complete genome
          Length = 11307

 Score = 30.2 bits (15), Expect = 2.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                            
Query: 519   acccaatatcagcga 533
             |||||||||||||||
Sbjct: 10945 acccaatatcagcga 10931


>gb|AE000295.1|AE000295 Escherichia coli K-12 MG1655 section 185 of 400 of the complete
            genome
          Length = 20254

 Score = 30.2 bits (15), Expect = 2.0
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                               
Query: 489  tgaaaaaaccattagcggc 507
            |||||||||||| ||||||
Sbjct: 6930 tgaaaaaaccatcagcggc 6912


>gb|AE000279.1|AE000279 Escherichia coli K-12 MG1655 section 169 of 400 of the complete
            genome
          Length = 10855

 Score = 30.2 bits (15), Expect = 2.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                           
Query: 472  cacctggtggcgatg 486
            |||||||||||||||
Sbjct: 2905 cacctggtggcgatg 2891


>gb|AE000167.1|AE000167 Escherichia coli K-12 MG1655 section 57 of 400 of the complete genome
          Length = 10264

 Score = 30.2 bits (15), Expect = 2.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                           
Query: 9    attctgactgcaacg 23
            |||||||||||||||
Sbjct: 7614 attctgactgcaacg 7600



 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                          
Query: 273  gaaaaaagcccgca 286
            ||||||||||||||
Sbjct: 7686 gaaaaaagcccgca 7673


>gb|AE000117.1|AE000117 Escherichia coli K-12 MG1655 section 7 of 400 of the complete genome
          Length = 13416

 Score = 30.2 bits (15), Expect = 2.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 456  cgccaaaatcaccaa 470
            |||||||||||||||
Sbjct: 2900 cgccaaaatcaccaa 2914


>gb|AE000115.1|AE000115 Escherichia coli K-12 MG1655 section 5 of 400 of the complete genome
          Length = 10102

 Score = 30.2 bits (15), Expect = 2.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 475  ctggtggcgatgatt 489
            |||||||||||||||
Sbjct: 1090 ctggtggcgatgatt 1104


>gb|AE000510.1|AE000510 Escherichia coli K-12 MG1655 section 400 of 400 of the complete
            genome
          Length = 6309

 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 476  tggtggcgatgatt 489
            ||||||||||||||
Sbjct: 4291 tggtggcgatgatt 4304


>gb|AE000488.1|AE000488 Escherichia coli K-12 MG1655 section 378 of 400 of the complete
            genome
          Length = 10003

 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                          
Query: 216  caccaccatcacca 229
            ||||||||||||||
Sbjct: 4411 caccaccatcacca 4398


>gb|AE000482.1|AE000482 Escherichia coli K-12 MG1655 section 372 of 400 of the complete genome
          Length = 20906

 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                           
Query: 221   ccatcaccattacc 234
             ||||||||||||||
Sbjct: 10191 ccatcaccattacc 10204


>gb|AE000463.1|AE000463 Escherichia coli K-12 MG1655 section 353 of 400 of the complete
            genome
          Length = 10159

 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                          
Query: 270  acagaaaaaagccc 283
            ||||||||||||||
Sbjct: 2092 acagaaaaaagccc 2079


>gb|AE000462.1|AE000462 Escherichia coli K-12 MG1655 section 352 of 400 of the complete
           genome
          Length = 10331

 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 154 cattagcaccacca 167
           ||||||||||||||
Sbjct: 351 cattagcaccacca 364


>gb|AE000441.1|AE000441 Escherichia coli K-12 MG1655 section 331 of 400 of the complete genome
          Length = 10562

 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                           
Query: 117   taaaaattacagag 130
             ||||||||||||||
Sbjct: 10457 taaaaattacagag 10470


>gb|AE000399.1|AE000399 Escherichia coli K-12 MG1655 section 289 of 400 of the complete
            genome
          Length = 17801

 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                          
Query: 335  tatcgatccgattg 348
            ||||||||||||||
Sbjct: 2290 tatcgatccgattg 2277


>gb|AE000371.1|AE000371 Escherichia coli K-12 MG1655 section 261 of 400 of the complete
            genome
          Length = 11795

 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 20   aacgggcaatatgt 33
            ||||||||||||||
Sbjct: 1100 aacgggcaatatgt 1113


>gb|AE000332.1|AE000332 Escherichia coli K-12 MG1655 section 222 of 400 of the complete
            genome
          Length = 12698

 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                          
Query: 248  cgggctgacgcgta 261
            ||||||||||||||
Sbjct: 5994 cgggctgacgcgta 5981


>gb|AE000313.1|AE000313 Escherichia coli K-12 MG1655 section 203 of 400 of the complete
            genome
          Length = 10144

 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                          
Query: 205  cagatcattaccac 218
            ||||||||||||||
Sbjct: 1405 cagatcattaccac 1392


>gb|AE000269.1|AE000269 Escherichia coli K-12 MG1655 section 159 of 400 of the complete genome
          Length = 11007

 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                           
Query: 144   ccatgaaacgcatt 157
             ||||||||||||||
Sbjct: 10338 ccatgaaacgcatt 10351


>gb|AE000230.1|AE000230 Escherichia coli K-12 MG1655 section 120 of 400 of the complete
            genome
          Length = 10118

 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 142  atccatgaaacgca 155
            ||||||||||||||
Sbjct: 4204 atccatgaaacgca 4217


>gb|AE000190.1|AE000190 Escherichia coli K-12 MG1655 section 80 of 400 of the complete genome
          Length = 10051

 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 108  acagacagataaaa 121
            ||||||||||||||
Sbjct: 3526 acagacagataaaa 3539


>gb|AE000183.1|AE000183 Escherichia coli K-12 MG1655 section 73 of 400 of the complete genome
          Length = 11029

 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                          
Query: 274  aaaaaagcccgcac 287
            ||||||||||||||
Sbjct: 3997 aaaaaagcccgcac 3984


>gb|AE000161.1|AE000161 Escherichia coli K-12 MG1655 section 51 of 400 of the complete genome
          Length = 16170

 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                           
Query: 16    ctgcaacgggcaat 29
             ||||||||||||||
Sbjct: 13270 ctgcaacgggcaat 13257


>gb|AE000155.1|AE000155 Escherichia coli K-12 MG1655 section 45 of 400 of the complete genome
          Length = 11593

 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                          
Query: 352  gaggtaacaaccat 365
            ||||||||||||||
Sbjct: 9581 gaggtaacaaccat 9568


>gb|AE000151.1|AE000151 Escherichia coli K-12 MG1655 section 41 of 400 of the complete genome
          Length = 11095

 Score = 28.2 bits (14), Expect = 8.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                          
Query: 223  atcaccattaccac 236
            ||||||||||||||
Sbjct: 5637 atcaccattaccac 5624


>gb|AE000149.1|AE000149 Escherichia coli K-12 MG1655 section 39 of 400 of the complete genome
          Length = 10429

 Score = 28.2 bits (14), Expect = 8.1
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                              
Query: 199  tacgatcagatcattacc 216
            |||||||||||| |||||
Sbjct: 5787 tacgatcagatctttacc 5770


  Database: ecoli.nt
    Posted date:  Jul 5, 2007 12:36 PM
  Number of letters in database: 4,662,239
  Number of sequences in database:  400
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 400
Number of Hits to DB: 25,352
Number of extensions: 1480
Number of successful extensions: 37
Number of sequences better than 10.0: 28
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 35
Length of query: 567
Length of database: 4,662,239
Length adjustment: 16
Effective length of query: 551
Effective length of database: 4,655,839
Effective search space: 2565367289
Effective search space used: 2565367289
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
S2: 14 (28.2 bits)
