I/O options:
  database file   : 512_simSeq1_75e-3.fa
  query file      : 512_simSeq2_75e-3.fa
  alphabet        : dna5
  output file     : 75e-3.gff
  output format   : gff

User specified parameters:
  minimal match length             : 50
  maximal error rate (epsilon)     : 0.075
  maximal x-drop                   : 10
  k-mer (q-gram) length            : 7
  search forward strand            : yes
  search reverse complement        : no

  verification strategy            : exact
  maximal number of matches        : 5000
  duplicate removal every          : 10000

Calculated parameters:
  s^min        : 10
  threshold    : 20
  distance cut : 68
  delta        : 16
  overlap      : 6

Loaded 1 query sequence.
Loaded 1 database sequence.

All matches matches resulting from your search have an E-value of: 
        2.19897e-10 or smaller  (match score = 1, error penalty = -2)

Constructing index...

Aligning all query sequences to database sequence...
  seq1 length=1000000 numMatches=500 errorRate=0.075 matchMinLength=50 matchMaxLength=200
    # SWIFT hits      : 712
    Longest hit       : 242
    Avg hit length    : 118

# Eps-matches     : 500
Longest eps-match : 219
Avg match length  : 131
