fastq_to_fasta
A template for creation of SeqAn3 apps, with a FASTQ to FASTA example app.
hierarchical_build.hpp
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1// --------------------------------------------------------------------------------------------------
2// Copyright (c) 2006-2022, Knut Reinert & Freie Universität Berlin
3// Copyright (c) 2016-2022, Knut Reinert & MPI für molekulare Genetik
4// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5// shipped with this file and also available at: https://github.com/seqan/raptor/blob/main/LICENSE.md
6// --------------------------------------------------------------------------------------------------
7
8#pragma once
9
10#include <robin_hood.h>
11
14
15namespace raptor::hibf
16{
17
18template <seqan3::data_layout data_layout_mode>
19size_t hierarchical_build(robin_hood::unordered_flat_set<size_t> & parent_kmers,
20 lemon::ListDigraph::Node const & current_node,
21 build_data<data_layout_mode> & data,
22 build_arguments const & arguments,
23 bool is_root);
24
25} // namespace raptor::hibf
Must be first include.
Definition: bin_prefixes.hpp:13
size_t hierarchical_build(robin_hood::unordered_flat_set< size_t > &parent_kmers, lemon::ListDigraph::Node const &current_node, build_data< data_layout_mode > &data, build_arguments const &arguments, bool is_root)
Definition: hierarchical_build.cpp:22