fastq_to_fasta
A template for creation of SeqAn3 apps, with a FASTQ to FASTA example app.
File List
Here is a list of all files with brief descriptions:
[detail level 12345]
  include
  raptor
  argument_parsing
 build_arguments.hpp
 build_parsing.hpp
 init_shared_meta.hpp
 parse_bin_path.hpp
 search_arguments.hpp
 search_parsing.hpp
 upgrade_arguments.hpp
 upgrade_parsing.hpp
 validators.hpp
  build
  hibf
 build_from_files.hpp
 build_from_minimiser.hpp
 call_parallel_on_bins.hpp
 compute_minimiser.hpp
 index_factory.hpp
 raptor_build.hpp
 store_index.hpp
  search
 do_parallel.hpp
 load_index.hpp
 search.hpp
 search_hibf.hpp
 search_ibf.hpp
 search_multiple.hpp
 search_single.hpp
 search_socks.hpp
 sync_out.hpp
  threshold
 forward_strand_minimiser.hpp
 logspace.hpp
 multiple_error_model.hpp
 one_error_model.hpp
 one_indirect_error_model.hpp
 pascal_row.hpp
 precompute_correction.hpp
 precompute_threshold.hpp
 threshold.hpp
 threshold_parameters.hpp
  upgrade
 upgrade.hpp
 upgrade_index.hpp
 adjust_seed.hpp
 dna4_traits.hpp
 hierarchical_interleaved_bloom_filter.hpp
 index.hpp
 raptor.hpp
 strong_types.hpp
  src
  argument_parsing
 build_parsing.cpp
 init_shared_meta.cpp
 parse_bin_path.cpp
 search_parsing.cpp
 upgrade_parsing.cpp
  build
  hibf
 bin_size_in_bits.cpp
 chopper_build.cpp
 compute_kmers.cpp
 construct_ibf.cpp
 create_ibfs_from_chopper_pack.cpp
 hierarchical_build.cpp
 initialise_max_bin_kmers.cpp
 insert_into_ibf.cpp
 loop_over_children.cpp
 parse_chopper_pack_header.cpp
 parse_chopper_pack_line.cpp
 read_chopper_pack_file.cpp
 update_user_bins.cpp
 build_from_minimiser.cpp
 compute_minimiser.cpp
 raptor_build.cpp
  search
 raptor_search.cpp
 search_hibf.cpp
 search_ibf.cpp
 search_multiple.cpp
 search_socks.cpp
  threshold
 multiple_error_model.cpp
 one_error_model.cpp
 one_indirect_error_model.cpp
 pascal_row.cpp
 precompute_correction.cppProvides stuff
 precompute_threshold.cppProvides stuff
  upgrade
 raptor_upgrade.cpp
 raptor.cpp