Date: 2022-03-04T17:37:52+00:00

Actual source code: sbaij.c

      2: /*
      3:     Defines the basic matrix operations for the SBAIJ (compressed row)
      4:   matrix storage format.
      5: */
      6: #include <../src/mat/impls/baij/seq/baij.h>
      7: #include <../src/mat/impls/sbaij/seq/sbaij.h>
      8: #include <petscblaslapack.h>

     10: #include <../src/mat/impls/sbaij/seq/relax.h>
     11: #define USESHORT
     12: #include <../src/mat/impls/sbaij/seq/relax.h>

     14: #if defined(PETSC_HAVE_ELEMENTAL)
     15: PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
     16: #endif
     17: #if defined(PETSC_HAVE_SCALAPACK)
     18: PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat,MatType,MatReuse,Mat*);
     19: #endif
     20: PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat,MatType,MatReuse,Mat*);

     22: /*
     23:      Checks for missing diagonals
     24: */
     25: PetscErrorCode MatMissingDiagonal_SeqSBAIJ(Mat A,PetscBool  *missing,PetscInt *dd)
     26: {
     27:   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
     29:   PetscInt       *diag,*ii = a->i,i;

     32:   MatMarkDiagonal_SeqSBAIJ(A);
     33:   *missing = PETSC_FALSE;
     34:   if (A->rmap->n > 0 && !ii) {
     35:     *missing = PETSC_TRUE;
     36:     if (dd) *dd = 0;
     37:     PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n");
     38:   } else {
     39:     diag = a->diag;
     40:     for (i=0; i<a->mbs; i++) {
     41:       if (diag[i] >= ii[i+1]) {
     42:         *missing = PETSC_TRUE;
     43:         if (dd) *dd = i;
     44:         break;
     45:       }
     46:     }
     47:   }
     48:   return(0);
     49: }

     51: PetscErrorCode MatMarkDiagonal_SeqSBAIJ(Mat A)
     52: {
     53:   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
     55:   PetscInt       i,j;

     58:   if (!a->diag) {
     59:     PetscMalloc1(a->mbs,&a->diag);
     60:     PetscLogObjectMemory((PetscObject)A,a->mbs*sizeof(PetscInt));
     61:     a->free_diag = PETSC_TRUE;
     62:   }
     63:   for (i=0; i<a->mbs; i++) {
     64:     a->diag[i] = a->i[i+1];
     65:     for (j=a->i[i]; j<a->i[i+1]; j++) {
     66:       if (a->j[j] == i) {
     67:         a->diag[i] = j;
     68:         break;
     69:       }
     70:     }
     71:   }
     72:   return(0);
     73: }

     75: static PetscErrorCode MatGetRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *inia[],const PetscInt *inja[],PetscBool  *done)
     76: {
     77:   Mat_SeqSBAIJ    *a = (Mat_SeqSBAIJ*)A->data;
     79:   PetscInt       i,j,n = a->mbs,nz = a->i[n],*tia,*tja,bs = A->rmap->bs,k,l,cnt;
     80:   PetscInt       **ia = (PetscInt**)inia,**ja = (PetscInt**)inja;

     83:   *nn = n;
     84:   if (!ia) return(0);
     85:   if (symmetric) {
     86:     MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,PETSC_FALSE,0,0,&tia,&tja);
     87:     nz   = tia[n];
     88:   } else {
     89:     tia = a->i; tja = a->j;
     90:   }

     92:   if (!blockcompressed && bs > 1) {
     93:     (*nn) *= bs;
     94:     /* malloc & create the natural set of indices */
     95:     PetscMalloc1((n+1)*bs,ia);
     96:     if (n) {
     97:       (*ia)[0] = oshift;
     98:       for (j=1; j<bs; j++) {
     99:         (*ia)[j] = (tia[1]-tia[0])*bs+(*ia)[j-1];
    100:       }
    101:     }

    103:     for (i=1; i<n; i++) {
    104:       (*ia)[i*bs] = (tia[i]-tia[i-1])*bs + (*ia)[i*bs-1];
    105:       for (j=1; j<bs; j++) {
    106:         (*ia)[i*bs+j] = (tia[i+1]-tia[i])*bs + (*ia)[i*bs+j-1];
    107:       }
    108:     }
    109:     if (n) {
    110:       (*ia)[n*bs] = (tia[n]-tia[n-1])*bs + (*ia)[n*bs-1];
    111:     }

    113:     if (inja) {
    114:       PetscMalloc1(nz*bs*bs,ja);
    115:       cnt = 0;
    116:       for (i=0; i<n; i++) {
    117:         for (j=0; j<bs; j++) {
    118:           for (k=tia[i]; k<tia[i+1]; k++) {
    119:             for (l=0; l<bs; l++) {
    120:               (*ja)[cnt++] = bs*tja[k] + l;
    121:             }
    122:           }
    123:         }
    124:       }
    125:     }

    127:     if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */
    128:       PetscFree(tia);
    129:       PetscFree(tja);
    130:     }
    131:   } else if (oshift == 1) {
    132:     if (symmetric) {
    133:       nz = tia[A->rmap->n/bs];
    134:       /*  add 1 to i and j indices */
    135:       for (i=0; i<A->rmap->n/bs+1; i++) tia[i] = tia[i] + 1;
    136:       *ia = tia;
    137:       if (ja) {
    138:         for (i=0; i<nz; i++) tja[i] = tja[i] + 1;
    139:         *ja = tja;
    140:       }
    141:     } else {
    142:       nz = a->i[A->rmap->n/bs];
    143:       /* malloc space and  add 1 to i and j indices */
    144:       PetscMalloc1(A->rmap->n/bs+1,ia);
    145:       for (i=0; i<A->rmap->n/bs+1; i++) (*ia)[i] = a->i[i] + 1;
    146:       if (ja) {
    147:         PetscMalloc1(nz,ja);
    148:         for (i=0; i<nz; i++) (*ja)[i] = a->j[i] + 1;
    149:       }
    150:     }
    151:   } else {
    152:     *ia = tia;
    153:     if (ja) *ja = tja;
    154:   }
    155:   return(0);
    156: }

    158: static PetscErrorCode MatRestoreRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
    159: {

    163:   if (!ia) return(0);
    164:   if ((!blockcompressed && A->rmap->bs > 1) || (symmetric || oshift == 1)) {
    165:     PetscFree(*ia);
    166:     if (ja) {PetscFree(*ja);}
    167:   }
    168:   return(0);
    169: }

    171: PetscErrorCode MatDestroy_SeqSBAIJ(Mat A)
    172: {
    173:   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;

    177: #if defined(PETSC_USE_LOG)
    178:   PetscLogObjectState((PetscObject)A,"Rows=%D, NZ=%D",A->rmap->N,a->nz);
    179: #endif
    180:   MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);
    181:   if (a->free_diag) {PetscFree(a->diag);}
    182:   ISDestroy(&a->row);
    183:   ISDestroy(&a->col);
    184:   ISDestroy(&a->icol);
    185:   PetscFree(a->idiag);
    186:   PetscFree(a->inode.size);
    187:   if (a->free_imax_ilen) {PetscFree2(a->imax,a->ilen);}
    188:   PetscFree(a->solve_work);
    189:   PetscFree(a->sor_work);
    190:   PetscFree(a->solves_work);
    191:   PetscFree(a->mult_work);
    192:   PetscFree(a->saved_values);
    193:   if (a->free_jshort) {PetscFree(a->jshort);}
    194:   PetscFree(a->inew);
    195:   MatDestroy(&a->parent);
    196:   PetscFree(A->data);

    198:   PetscObjectChangeTypeName((PetscObject)A,NULL);
    199:   PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);
    200:   PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);
    201:   PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetColumnIndices_C",NULL);
    202:   PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqaij_C",NULL);
    203:   PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqbaij_C",NULL);
    204:   PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetPreallocation_C",NULL);
    205:   PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetPreallocationCSR_C",NULL);
    206: #if defined(PETSC_HAVE_ELEMENTAL)
    207:   PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_elemental_C",NULL);
    208: #endif
    209: #if defined(PETSC_HAVE_SCALAPACK)
    210:   PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_scalapack_C",NULL);
    211: #endif
    212:   return(0);
    213: }

    215: PetscErrorCode MatSetOption_SeqSBAIJ(Mat A,MatOption op,PetscBool flg)
    216: {
    217:   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
    218: #if defined(PETSC_USE_COMPLEX)
    219:   PetscInt       bs;
    220: #endif

    224: #if defined(PETSC_USE_COMPLEX)
    225:   MatGetBlockSize(A,&bs);
    226: #endif
    227:   switch (op) {
    228:   case MAT_ROW_ORIENTED:
    229:     a->roworiented = flg;
    230:     break;
    231:   case MAT_KEEP_NONZERO_PATTERN:
    232:     a->keepnonzeropattern = flg;
    233:     break;
    234:   case MAT_NEW_NONZERO_LOCATIONS:
    235:     a->nonew = (flg ? 0 : 1);
    236:     break;
    237:   case MAT_NEW_NONZERO_LOCATION_ERR:
    238:     a->nonew = (flg ? -1 : 0);
    239:     break;
    240:   case MAT_NEW_NONZERO_ALLOCATION_ERR:
    241:     a->nonew = (flg ? -2 : 0);
    242:     break;
    243:   case MAT_UNUSED_NONZERO_LOCATION_ERR:
    244:     a->nounused = (flg ? -1 : 0);
    245:     break;
    246:   case MAT_FORCE_DIAGONAL_ENTRIES:
    247:   case MAT_IGNORE_OFF_PROC_ENTRIES:
    248:   case MAT_USE_HASH_TABLE:
    249:   case MAT_SORTED_FULL:
    250:     PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);
    251:     break;
    252:   case MAT_HERMITIAN:
    253: #if defined(PETSC_USE_COMPLEX)
    254:     if (flg) { /* disable transpose ops */
    255:       if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for Hermitian with block size greater than 1");
    256:       A->ops->multtranspose    = NULL;
    257:       A->ops->multtransposeadd = NULL;
    258:       A->symmetric             = PETSC_FALSE;
    259:     }
    260: #endif
    261:     break;
    262:   case MAT_SYMMETRIC:
    263:   case MAT_SPD:
    264: #if defined(PETSC_USE_COMPLEX)
    265:     if (flg) { /* An hermitian and symmetric matrix has zero imaginary part (restore back transpose ops) */
    266:       A->ops->multtranspose    = A->ops->mult;
    267:       A->ops->multtransposeadd = A->ops->multadd;
    268:     }
    269: #endif
    270:     break;
    271:     /* These options are handled directly by MatSetOption() */
    272:   case MAT_STRUCTURALLY_SYMMETRIC:
    273:   case MAT_SYMMETRY_ETERNAL:
    274:   case MAT_STRUCTURE_ONLY:
    275:     /* These options are handled directly by MatSetOption() */
    276:     break;
    277:   case MAT_IGNORE_LOWER_TRIANGULAR:
    278:     a->ignore_ltriangular = flg;
    279:     break;
    280:   case MAT_ERROR_LOWER_TRIANGULAR:
    281:     a->ignore_ltriangular = flg;
    282:     break;
    283:   case MAT_GETROW_UPPERTRIANGULAR:
    284:     a->getrow_utriangular = flg;
    285:     break;
    286:   case MAT_SUBMAT_SINGLEIS:
    287:     break;
    288:   default:
    289:     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
    290:   }
    291:   return(0);
    292: }

    294: PetscErrorCode MatGetRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
    295: {
    296:   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;

    300:   if (A && !a->getrow_utriangular) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format. Getting the upper triangular part of row, run with -mat_getrow_uppertriangular, call MatSetOption(mat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE) or MatGetRowUpperTriangular()");

    302:   /* Get the upper triangular part of the row */
    303:   MatGetRow_SeqBAIJ_private(A,row,nz,idx,v,a->i,a->j,a->a);
    304:   return(0);
    305: }

    307: PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
    308: {

    312:   if (nz)  *nz = 0;
    313:   if (idx) {PetscFree(*idx);}
    314:   if (v)   {PetscFree(*v);}
    315:   return(0);
    316: }

    318: PetscErrorCode MatGetRowUpperTriangular_SeqSBAIJ(Mat A)
    319: {
    320:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;

    323:   a->getrow_utriangular = PETSC_TRUE;
    324:   return(0);
    325: }

    327: PetscErrorCode MatRestoreRowUpperTriangular_SeqSBAIJ(Mat A)
    328: {
    329:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;

    332:   a->getrow_utriangular = PETSC_FALSE;
    333:   return(0);
    334: }

    336: PetscErrorCode MatTranspose_SeqSBAIJ(Mat A,MatReuse reuse,Mat *B)
    337: {

    341:   if (reuse == MAT_INITIAL_MATRIX) {
    342:     MatDuplicate(A,MAT_COPY_VALUES,B);
    343:   } else if (reuse == MAT_REUSE_MATRIX) {
    344:     MatCopy(A,*B,SAME_NONZERO_PATTERN);
    345:   }
    346:   return(0);
    347: }

    349: PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat A,PetscViewer viewer)
    350: {
    351:   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
    352:   PetscErrorCode    ierr;
    353:   PetscInt          i,j,bs = A->rmap->bs,k,l,bs2=a->bs2;
    354:   PetscViewerFormat format;
    355:   PetscInt          *diag;

    358:   PetscViewerGetFormat(viewer,&format);
    359:   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
    360:     PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);
    361:   } else if (format == PETSC_VIEWER_ASCII_MATLAB) {
    362:     Mat        aij;
    363:     const char *matname;

    365:     if (A->factortype && bs>1) {
    366:       PetscPrintf(PETSC_COMM_SELF,"Warning: matrix is factored with bs>1. MatView() with PETSC_VIEWER_ASCII_MATLAB is not supported and ignored!\n");
    367:       return(0);
    368:     }
    369:     MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);
    370:     PetscObjectGetName((PetscObject)A,&matname);
    371:     PetscObjectSetName((PetscObject)aij,matname);
    372:     MatView(aij,viewer);
    373:     MatDestroy(&aij);
    374:   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
    375:     PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);
    376:     for (i=0; i<a->mbs; i++) {
    377:       for (j=0; j<bs; j++) {
    378:         PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);
    379:         for (k=a->i[i]; k<a->i[i+1]; k++) {
    380:           for (l=0; l<bs; l++) {
    381: #if defined(PETSC_USE_COMPLEX)
    382:             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
    383:               PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l,
    384:                                             (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));
    385:             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
    386:               PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l,
    387:                                             (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));
    388:             } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
    389:               PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]));
    390:             }
    391: #else
    392:             if (a->a[bs2*k + l*bs + j] != 0.0) {
    393:               PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]);
    394:             }
    395: #endif
    396:           }
    397:         }
    398:         PetscViewerASCIIPrintf(viewer,"\n");
    399:       }
    400:     }
    401:     PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);
    402:   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
    403:     return(0);
    404:   } else {
    405:     PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);
    406:     if (A->factortype) { /* for factored matrix */
    407:       if (bs>1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"matrix is factored with bs>1. Not implemented yet");

    409:       diag=a->diag;
    410:       for (i=0; i<a->mbs; i++) { /* for row block i */
    411:         PetscViewerASCIIPrintf(viewer,"row %D:",i);
    412:         /* diagonal entry */
    413: #if defined(PETSC_USE_COMPLEX)
    414:         if (PetscImaginaryPart(a->a[diag[i]]) > 0.0) {
    415:           PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]),(double)PetscImaginaryPart(1.0/a->a[diag[i]]));
    416:         } else if (PetscImaginaryPart(a->a[diag[i]]) < 0.0) {
    417:           PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]),-(double)PetscImaginaryPart(1.0/a->a[diag[i]]));
    418:         } else {
    419:           PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]));
    420:         }
    421: #else
    422:         PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->j[diag[i]],(double)(1.0/a->a[diag[i]]));
    423: #endif
    424:         /* off-diagonal entries */
    425:         for (k=a->i[i]; k<a->i[i+1]-1; k++) {
    426: #if defined(PETSC_USE_COMPLEX)
    427:           if (PetscImaginaryPart(a->a[k]) > 0.0) {
    428:             PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k],(double)PetscRealPart(a->a[k]),(double)PetscImaginaryPart(a->a[k]));
    429:           } else if (PetscImaginaryPart(a->a[k]) < 0.0) {
    430:             PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k],(double)PetscRealPart(a->a[k]),-(double)PetscImaginaryPart(a->a[k]));
    431:           } else {
    432:             PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k],(double)PetscRealPart(a->a[k]));
    433:           }
    434: #else
    435:           PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->j[k],(double)a->a[k]);
    436: #endif
    437:         }
    438:         PetscViewerASCIIPrintf(viewer,"\n");
    439:       }

    441:     } else { /* for non-factored matrix */
    442:       for (i=0; i<a->mbs; i++) { /* for row block i */
    443:         for (j=0; j<bs; j++) {   /* for row bs*i + j */
    444:           PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);
    445:           for (k=a->i[i]; k<a->i[i+1]; k++) { /* for column block */
    446:             for (l=0; l<bs; l++) {            /* for column */
    447: #if defined(PETSC_USE_COMPLEX)
    448:               if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) {
    449:                 PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l,
    450:                                               (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));
    451:               } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) {
    452:                 PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l,
    453:                                               (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));
    454:               } else {
    455:                 PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]));
    456:               }
    457: #else
    458:               PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]);
    459: #endif
    460:             }
    461:           }
    462:           PetscViewerASCIIPrintf(viewer,"\n");
    463:         }
    464:       }
    465:     }
    466:     PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);
    467:   }
    468:   PetscViewerFlush(viewer);
    469:   return(0);
    470: }

    472: #include <petscdraw.h>
    473: static PetscErrorCode MatView_SeqSBAIJ_Draw_Zoom(PetscDraw draw,void *Aa)
    474: {
    475:   Mat            A = (Mat) Aa;
    476:   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)A->data;
    478:   PetscInt       row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2;
    479:   PetscReal      xl,yl,xr,yr,x_l,x_r,y_l,y_r;
    480:   MatScalar      *aa;
    481:   PetscViewer    viewer;

    484:   PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);
    485:   PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);

    487:   /* loop over matrix elements drawing boxes */

    489:   PetscDrawCollectiveBegin(draw);
    490:   PetscDrawString(draw, .3*(xl+xr), .3*(yl+yr), PETSC_DRAW_BLACK, "symmetric");
    491:   /* Blue for negative, Cyan for zero and  Red for positive */
    492:   color = PETSC_DRAW_BLUE;
    493:   for (i=0,row=0; i<mbs; i++,row+=bs) {
    494:     for (j=a->i[i]; j<a->i[i+1]; j++) {
    495:       y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
    496:       x_l = a->j[j]*bs; x_r = x_l + 1.0;
    497:       aa  = a->a + j*bs2;
    498:       for (k=0; k<bs; k++) {
    499:         for (l=0; l<bs; l++) {
    500:           if (PetscRealPart(*aa++) >=  0.) continue;
    501:           PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
    502:         }
    503:       }
    504:     }
    505:   }
    506:   color = PETSC_DRAW_CYAN;
    507:   for (i=0,row=0; i<mbs; i++,row+=bs) {
    508:     for (j=a->i[i]; j<a->i[i+1]; j++) {
    509:       y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
    510:       x_l = a->j[j]*bs; x_r = x_l + 1.0;
    511:       aa = a->a + j*bs2;
    512:       for (k=0; k<bs; k++) {
    513:         for (l=0; l<bs; l++) {
    514:           if (PetscRealPart(*aa++) != 0.) continue;
    515:           PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
    516:         }
    517:       }
    518:     }
    519:   }
    520:   color = PETSC_DRAW_RED;
    521:   for (i=0,row=0; i<mbs; i++,row+=bs) {
    522:     for (j=a->i[i]; j<a->i[i+1]; j++) {
    523:       y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
    524:       x_l = a->j[j]*bs; x_r = x_l + 1.0;
    525:       aa = a->a + j*bs2;
    526:       for (k=0; k<bs; k++) {
    527:         for (l=0; l<bs; l++) {
    528:           if (PetscRealPart(*aa++) <= 0.) continue;
    529:           PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
    530:         }
    531:       }
    532:     }
    533:   }
    534:   PetscDrawCollectiveEnd(draw);
    535:   return(0);
    536: }

    538: static PetscErrorCode MatView_SeqSBAIJ_Draw(Mat A,PetscViewer viewer)
    539: {
    541:   PetscReal      xl,yl,xr,yr,w,h;
    542:   PetscDraw      draw;
    543:   PetscBool      isnull;

    546:   PetscViewerDrawGetDraw(viewer,0,&draw);
    547:   PetscDrawIsNull(draw,&isnull);
    548:   if (isnull) return(0);

    550:   xr   = A->rmap->N; yr = A->rmap->N; h = yr/10.0; w = xr/10.0;
    551:   xr  += w;          yr += h;        xl = -w;     yl = -h;
    552:   PetscDrawSetCoordinates(draw,xl,yl,xr,yr);
    553:   PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);
    554:   PetscDrawZoom(draw,MatView_SeqSBAIJ_Draw_Zoom,A);
    555:   PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);
    556:   PetscDrawSave(draw);
    557:   return(0);
    558: }

    560: /* Used for both MPIBAIJ and MPISBAIJ matrices */
    561: #define MatView_SeqSBAIJ_Binary MatView_SeqBAIJ_Binary

    563: PetscErrorCode MatView_SeqSBAIJ(Mat A,PetscViewer viewer)
    564: {
    566:   PetscBool      iascii,isbinary,isdraw;

    569:   PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);
    570:   PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);
    571:   PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);
    572:   if (iascii) {
    573:     MatView_SeqSBAIJ_ASCII(A,viewer);
    574:   } else if (isbinary) {
    575:     MatView_SeqSBAIJ_Binary(A,viewer);
    576:   } else if (isdraw) {
    577:     MatView_SeqSBAIJ_Draw(A,viewer);
    578:   } else {
    579:     Mat        B;
    580:     const char *matname;
    581:     MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);
    582:     PetscObjectGetName((PetscObject)A,&matname);
    583:     PetscObjectSetName((PetscObject)B,matname);
    584:     MatView(B,viewer);
    585:     MatDestroy(&B);
    586:   }
    587:   return(0);
    588: }

    590: PetscErrorCode MatGetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
    591: {
    592:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
    593:   PetscInt     *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j;
    594:   PetscInt     *ai = a->i,*ailen = a->ilen;
    595:   PetscInt     brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2;
    596:   MatScalar    *ap,*aa = a->a;

    599:   for (k=0; k<m; k++) { /* loop over rows */
    600:     row = im[k]; brow = row/bs;
    601:     if (row < 0) {v += n; continue;} /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",row); */
    602:     if (row >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1);
    603:     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow];
    604:     nrow = ailen[brow];
    605:     for (l=0; l<n; l++) { /* loop over columns */
    606:       if (in[l] < 0) {v++; continue;} /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",in[l]); */
    607:       if (in[l] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap->n-1);
    608:       col  = in[l];
    609:       bcol = col/bs;
    610:       cidx = col%bs;
    611:       ridx = row%bs;
    612:       high = nrow;
    613:       low  = 0; /* assume unsorted */
    614:       while (high-low > 5) {
    615:         t = (low+high)/2;
    616:         if (rp[t] > bcol) high = t;
    617:         else              low  = t;
    618:       }
    619:       for (i=low; i<high; i++) {
    620:         if (rp[i] > bcol) break;
    621:         if (rp[i] == bcol) {
    622:           *v++ = ap[bs2*i+bs*cidx+ridx];
    623:           goto finished;
    624:         }
    625:       }
    626:       *v++ = 0.0;
    627: finished:;
    628:     }
    629:   }
    630:   return(0);
    631: }

    633: PetscErrorCode MatPermute_SeqSBAIJ(Mat A,IS rowp,IS colp,Mat *B)
    634: {
    635:   Mat            C;

    639:   MatConvert(A,MATSEQBAIJ,MAT_INITIAL_MATRIX,&C);
    640:   MatPermute(C,rowp,colp,B);
    641:   MatDestroy(&C);
    642:   if (rowp == colp) {
    643:     MatConvert(*B,MATSEQSBAIJ,MAT_INPLACE_MATRIX,B);
    644:   }
    645:   return(0);
    646: }

    648: PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
    649: {
    650:   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
    651:   PetscErrorCode    ierr;
    652:   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1;
    653:   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
    654:   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval;
    655:   PetscBool         roworiented=a->roworiented;
    656:   const PetscScalar *value     = v;
    657:   MatScalar         *ap,*aa = a->a,*bap;

    660:   if (roworiented) stepval = (n-1)*bs;
    661:   else stepval = (m-1)*bs;

    663:   for (k=0; k<m; k++) { /* loop over added rows */
    664:     row = im[k];
    665:     if (row < 0) continue;
    666:     if (PetscUnlikelyDebug(row >= a->mbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block index row too large %D max %D",row,a->mbs-1);
    667:     rp   = aj + ai[row];
    668:     ap   = aa + bs2*ai[row];
    669:     rmax = imax[row];
    670:     nrow = ailen[row];
    671:     low  = 0;
    672:     high = nrow;
    673:     for (l=0; l<n; l++) { /* loop over added columns */
    674:       if (in[l] < 0) continue;
    675:       col = in[l];
    676:       if (PetscUnlikelyDebug(col >= a->nbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block index column too large %D max %D",col,a->nbs-1);
    677:       if (col < row) {
    678:         if (a->ignore_ltriangular) continue; /* ignore lower triangular block */
    679:         else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
    680:       }
    681:       if (roworiented) value = v + k*(stepval+bs)*bs + l*bs;
    682:       else value = v + l*(stepval+bs)*bs + k*bs;

    684:       if (col <= lastcol) low = 0;
    685:       else high = nrow;

    687:       lastcol = col;
    688:       while (high-low > 7) {
    689:         t = (low+high)/2;
    690:         if (rp[t] > col) high = t;
    691:         else             low  = t;
    692:       }
    693:       for (i=low; i<high; i++) {
    694:         if (rp[i] > col) break;
    695:         if (rp[i] == col) {
    696:           bap = ap +  bs2*i;
    697:           if (roworiented) {
    698:             if (is == ADD_VALUES) {
    699:               for (ii=0; ii<bs; ii++,value+=stepval) {
    700:                 for (jj=ii; jj<bs2; jj+=bs) {
    701:                   bap[jj] += *value++;
    702:                 }
    703:               }
    704:             } else {
    705:               for (ii=0; ii<bs; ii++,value+=stepval) {
    706:                 for (jj=ii; jj<bs2; jj+=bs) {
    707:                   bap[jj] = *value++;
    708:                 }
    709:                }
    710:             }
    711:           } else {
    712:             if (is == ADD_VALUES) {
    713:               for (ii=0; ii<bs; ii++,value+=stepval) {
    714:                 for (jj=0; jj<bs; jj++) {
    715:                   *bap++ += *value++;
    716:                 }
    717:               }
    718:             } else {
    719:               for (ii=0; ii<bs; ii++,value+=stepval) {
    720:                 for (jj=0; jj<bs; jj++) {
    721:                   *bap++  = *value++;
    722:                 }
    723:               }
    724:             }
    725:           }
    726:           goto noinsert2;
    727:         }
    728:       }
    729:       if (nonew == 1) goto noinsert2;
    730:       if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", row, col);
    731:       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
    732:       N = nrow++ - 1; high++;
    733:       /* shift up all the later entries in this row */
    734:       PetscArraymove(rp+i+1,rp+i,N-i+1);
    735:       PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));
    736:       PetscArrayzero(ap+bs2*i,bs2);
    737:       rp[i] = col;
    738:       bap   = ap +  bs2*i;
    739:       if (roworiented) {
    740:         for (ii=0; ii<bs; ii++,value+=stepval) {
    741:           for (jj=ii; jj<bs2; jj+=bs) {
    742:             bap[jj] = *value++;
    743:           }
    744:         }
    745:       } else {
    746:         for (ii=0; ii<bs; ii++,value+=stepval) {
    747:           for (jj=0; jj<bs; jj++) {
    748:             *bap++ = *value++;
    749:           }
    750:         }
    751:        }
    752:     noinsert2:;
    753:       low = i;
    754:     }
    755:     ailen[row] = nrow;
    756:   }
    757:   return(0);
    758: }

    760: /*
    761:     This is not yet used
    762: */
    763: PetscErrorCode MatAssemblyEnd_SeqSBAIJ_SeqAIJ_Inode(Mat A)
    764: {
    765:   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
    767:   const PetscInt *ai = a->i, *aj = a->j,*cols;
    768:   PetscInt       i   = 0,j,blk_size,m = A->rmap->n,node_count = 0,nzx,nzy,*ns,row,nz,cnt,cnt2,*counts;
    769:   PetscBool      flag;

    772:   PetscMalloc1(m,&ns);
    773:   while (i < m) {
    774:     nzx = ai[i+1] - ai[i];       /* Number of nonzeros */
    775:     /* Limits the number of elements in a node to 'a->inode.limit' */
    776:     for (j=i+1,blk_size=1; j<m && blk_size <a->inode.limit; ++j,++blk_size) {
    777:       nzy = ai[j+1] - ai[j];
    778:       if (nzy != (nzx - j + i)) break;
    779:       PetscArraycmp(aj + ai[i] + j - i,aj + ai[j],nzy,&flag);
    780:       if (!flag) break;
    781:     }
    782:     ns[node_count++] = blk_size;

    784:     i = j;
    785:   }
    786:   if (!a->inode.size && m && node_count > .9*m) {
    787:     PetscFree(ns);
    788:     PetscInfo2(A,"Found %D nodes out of %D rows. Not using Inode routines\n",node_count,m);
    789:   } else {
    790:     a->inode.node_count = node_count;

    792:     PetscMalloc1(node_count,&a->inode.size);
    793:     PetscLogObjectMemory((PetscObject)A,node_count*sizeof(PetscInt));
    794:     PetscArraycpy(a->inode.size,ns,node_count);
    795:     PetscFree(ns);
    796:     PetscInfo3(A,"Found %D nodes of %D. Limit used: %D. Using Inode routines\n",node_count,m,a->inode.limit);

    798:     /* count collections of adjacent columns in each inode */
    799:     row = 0;
    800:     cnt = 0;
    801:     for (i=0; i<node_count; i++) {
    802:       cols = aj + ai[row] + a->inode.size[i];
    803:       nz   = ai[row+1] - ai[row] - a->inode.size[i];
    804:       for (j=1; j<nz; j++) {
    805:         if (cols[j] != cols[j-1]+1) cnt++;
    806:       }
    807:       cnt++;
    808:       row += a->inode.size[i];
    809:     }
    810:     PetscMalloc1(2*cnt,&counts);
    811:     cnt  = 0;
    812:     row  = 0;
    813:     for (i=0; i<node_count; i++) {
    814:       cols = aj + ai[row] + a->inode.size[i];
    815:       counts[2*cnt] = cols[0];
    816:       nz   = ai[row+1] - ai[row] - a->inode.size[i];
    817:       cnt2 = 1;
    818:       for (j=1; j<nz; j++) {
    819:         if (cols[j] != cols[j-1]+1) {
    820:           counts[2*(cnt++)+1] = cnt2;
    821:           counts[2*cnt]       = cols[j];
    822:           cnt2 = 1;
    823:         } else cnt2++;
    824:       }
    825:       counts[2*(cnt++)+1] = cnt2;
    826:       row += a->inode.size[i];
    827:     }
    828:     PetscIntView(2*cnt,counts,NULL);
    829:   }
    830:   return(0);
    831: }

    833: PetscErrorCode MatAssemblyEnd_SeqSBAIJ(Mat A,MatAssemblyType mode)
    834: {
    835:   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
    837:   PetscInt       fshift = 0,i,*ai = a->i,*aj = a->j,*imax = a->imax;
    838:   PetscInt       m      = A->rmap->N,*ip,N,*ailen = a->ilen;
    839:   PetscInt       mbs    = a->mbs,bs2 = a->bs2,rmax = 0;
    840:   MatScalar      *aa    = a->a,*ap;

    843:   if (mode == MAT_FLUSH_ASSEMBLY) return(0);

    845:   if (m) rmax = ailen[0];
    846:   for (i=1; i<mbs; i++) {
    847:     /* move each row back by the amount of empty slots (fshift) before it*/
    848:     fshift += imax[i-1] - ailen[i-1];
    849:     rmax    = PetscMax(rmax,ailen[i]);
    850:     if (fshift) {
    851:       ip = aj + ai[i];
    852:       ap = aa + bs2*ai[i];
    853:       N  = ailen[i];
    854:       PetscArraymove(ip-fshift,ip,N);
    855:       PetscArraymove(ap-bs2*fshift,ap,bs2*N);
    856:     }
    857:     ai[i] = ai[i-1] + ailen[i-1];
    858:   }
    859:   if (mbs) {
    860:     fshift += imax[mbs-1] - ailen[mbs-1];
    861:     ai[mbs] = ai[mbs-1] + ailen[mbs-1];
    862:   }
    863:   /* reset ilen and imax for each row */
    864:   for (i=0; i<mbs; i++) {
    865:     ailen[i] = imax[i] = ai[i+1] - ai[i];
    866:   }
    867:   a->nz = ai[mbs];

    869:   /* diagonals may have moved, reset it */
    870:   if (a->diag) {
    871:     PetscArraycpy(a->diag,ai,mbs);
    872:   }
    873:   if (fshift && a->nounused == -1) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB, "Unused space detected in matrix: %D X %D block size %D, %D unneeded", m, A->cmap->n, A->rmap->bs, fshift*bs2);

    875:   PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->rmap->N,A->rmap->bs,fshift*bs2,a->nz*bs2);
    876:   PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);
    877:   PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);

    879:   A->info.mallocs    += a->reallocs;
    880:   a->reallocs         = 0;
    881:   A->info.nz_unneeded = (PetscReal)fshift*bs2;
    882:   a->idiagvalid       = PETSC_FALSE;
    883:   a->rmax             = rmax;

    885:   if (A->cmap->n < 65536 && A->cmap->bs == 1) {
    886:     if (a->jshort && a->free_jshort) {
    887:       /* when matrix data structure is changed, previous jshort must be replaced */
    888:       PetscFree(a->jshort);
    889:     }
    890:     PetscMalloc1(a->i[A->rmap->n],&a->jshort);
    891:     PetscLogObjectMemory((PetscObject)A,a->i[A->rmap->n]*sizeof(unsigned short));
    892:     for (i=0; i<a->i[A->rmap->n]; i++) a->jshort[i] = a->j[i];
    893:     A->ops->mult   = MatMult_SeqSBAIJ_1_ushort;
    894:     A->ops->sor    = MatSOR_SeqSBAIJ_ushort;
    895:     a->free_jshort = PETSC_TRUE;
    896:   }
    897:   return(0);
    898: }

    900: /*
    901:    This function returns an array of flags which indicate the locations of contiguous
    902:    blocks that should be zeroed. for eg: if bs = 3  and is = [0,1,2,3,5,6,7,8,9]
    903:    then the resulting sizes = [3,1,1,3,1] corresponding to sets [(0,1,2),(3),(5),(6,7,8),(9)]
    904:    Assume: sizes should be long enough to hold all the values.
    905: */
    906: PetscErrorCode MatZeroRows_SeqSBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max)
    907: {
    908:   PetscInt  i,j,k,row;
    909:   PetscBool flg;

    912:   for (i=0,j=0; i<n; j++) {
    913:     row = idx[i];
    914:     if (row%bs!=0) { /* Not the beginning of a block */
    915:       sizes[j] = 1;
    916:       i++;
    917:     } else if (i+bs > n) { /* Beginning of a block, but complete block doesn't exist (at idx end) */
    918:       sizes[j] = 1;         /* Also makes sure atleast 'bs' values exist for next else */
    919:       i++;
    920:     } else { /* Begining of the block, so check if the complete block exists */
    921:       flg = PETSC_TRUE;
    922:       for (k=1; k<bs; k++) {
    923:         if (row+k != idx[i+k]) { /* break in the block */
    924:           flg = PETSC_FALSE;
    925:           break;
    926:         }
    927:       }
    928:       if (flg) { /* No break in the bs */
    929:         sizes[j] = bs;
    930:         i       += bs;
    931:       } else {
    932:         sizes[j] = 1;
    933:         i++;
    934:       }
    935:     }
    936:   }
    937:   *bs_max = j;
    938:   return(0);
    939: }

    941: /* Only add/insert a(i,j) with i<=j (blocks).
    942:    Any a(i,j) with i>j input by user is ingored.
    943: */

    945: PetscErrorCode MatSetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
    946: {
    947:   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
    949:   PetscInt       *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1;
    950:   PetscInt       *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented;
    951:   PetscInt       *aj  =a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol;
    952:   PetscInt       ridx,cidx,bs2=a->bs2;
    953:   MatScalar      *ap,value,*aa=a->a,*bap;

    956:   for (k=0; k<m; k++) { /* loop over added rows */
    957:     row  = im[k];       /* row number */
    958:     brow = row/bs;      /* block row number */
    959:     if (row < 0) continue;
    960:     if (PetscUnlikelyDebug(row >= A->rmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1);
    961:     rp   = aj + ai[brow]; /*ptr to beginning of column value of the row block*/
    962:     ap   = aa + bs2*ai[brow]; /*ptr to beginning of element value of the row block*/
    963:     rmax = imax[brow];  /* maximum space allocated for this row */
    964:     nrow = ailen[brow]; /* actual length of this row */
    965:     low  = 0;
    966:     high = nrow;
    967:     for (l=0; l<n; l++) { /* loop over added columns */
    968:       if (in[l] < 0) continue;
    969:       if (PetscUnlikelyDebug(in[l] >= A->cmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap->N-1);
    970:       col  = in[l];
    971:       bcol = col/bs;              /* block col number */

    973:       if (brow > bcol) {
    974:         if (a->ignore_ltriangular) continue; /* ignore lower triangular values */
    975:         else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
    976:       }

    978:       ridx = row % bs; cidx = col % bs; /*row and col index inside the block */
    979:       if ((brow==bcol && ridx<=cidx) || (brow<bcol)) {
    980:         /* element value a(k,l) */
    981:         if (roworiented) value = v[l + k*n];
    982:         else value = v[k + l*m];

    984:         /* move pointer bap to a(k,l) quickly and add/insert value */
    985:         if (col <= lastcol) low = 0;
    986:         else high = nrow;

    988:         lastcol = col;
    989:         while (high-low > 7) {
    990:           t = (low+high)/2;
    991:           if (rp[t] > bcol) high = t;
    992:           else              low  = t;
    993:         }
    994:         for (i=low; i<high; i++) {
    995:           if (rp[i] > bcol) break;
    996:           if (rp[i] == bcol) {
    997:             bap = ap +  bs2*i + bs*cidx + ridx;
    998:             if (is == ADD_VALUES) *bap += value;
    999:             else                  *bap  = value;
    1000:             /* for diag block, add/insert its symmetric element a(cidx,ridx) */
    1001:             if (brow == bcol && ridx < cidx) {
    1002:               bap = ap +  bs2*i + bs*ridx + cidx;
    1003:               if (is == ADD_VALUES) *bap += value;
    1004:               else                  *bap  = value;
    1005:             }
    1006:             goto noinsert1;
    1007:           }
    1008:         }

    1010:         if (nonew == 1) goto noinsert1;
    1011:         if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
    1012:         MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);

    1014:         N = nrow++ - 1; high++;
    1015:         /* shift up all the later entries in this row */
    1016:         PetscArraymove(rp+i+1,rp+i,N-i+1);
    1017:         PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));
    1018:         PetscArrayzero(ap+bs2*i,bs2);
    1019:         rp[i]                      = bcol;
    1020:         ap[bs2*i + bs*cidx + ridx] = value;
    1021:         /* for diag block, add/insert its symmetric element a(cidx,ridx) */
    1022:         if (brow == bcol && ridx < cidx) {
    1023:           ap[bs2*i + bs*ridx + cidx] = value;
    1024:         }
    1025:         A->nonzerostate++;
    1026: noinsert1:;
    1027:         low = i;
    1028:       }
    1029:     }   /* end of loop over added columns */
    1030:     ailen[brow] = nrow;
    1031:   }   /* end of loop over added rows */
    1032:   return(0);
    1033: }

    1035: PetscErrorCode MatICCFactor_SeqSBAIJ(Mat inA,IS row,const MatFactorInfo *info)
    1036: {
    1037:   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inA->data;
    1038:   Mat            outA;
    1040:   PetscBool      row_identity;

    1043:   if (info->levels != 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only levels=0 is supported for in-place icc");
    1044:   ISIdentity(row,&row_identity);
    1045:   if (!row_identity) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix reordering is not supported");
    1046:   if (inA->rmap->bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix block size %D is not supported",inA->rmap->bs); /* Need to replace MatCholeskyFactorSymbolic_SeqSBAIJ_MSR()! */

    1048:   outA            = inA;
    1049:   inA->factortype = MAT_FACTOR_ICC;
    1050:   PetscFree(inA->solvertype);
    1051:   PetscStrallocpy(MATSOLVERPETSC,&inA->solvertype);

    1053:   MatMarkDiagonal_SeqSBAIJ(inA);
    1054:   MatSeqSBAIJSetNumericFactorization_inplace(inA,row_identity);

    1056:   PetscObjectReference((PetscObject)row);
    1057:   ISDestroy(&a->row);
    1058:   a->row = row;
    1059:   PetscObjectReference((PetscObject)row);
    1060:   ISDestroy(&a->col);
    1061:   a->col = row;

    1063:   /* Create the invert permutation so that it can be used in MatCholeskyFactorNumeric() */
    1064:   if (a->icol) {ISInvertPermutation(row,PETSC_DECIDE, &a->icol);}
    1065:   PetscLogObjectParent((PetscObject)inA,(PetscObject)a->icol);

    1067:   if (!a->solve_work) {
    1068:     PetscMalloc1(inA->rmap->N+inA->rmap->bs,&a->solve_work);
    1069:     PetscLogObjectMemory((PetscObject)inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar));
    1070:   }

    1072:   MatCholeskyFactorNumeric(outA,inA,info);
    1073:   return(0);
    1074: }

    1076: PetscErrorCode  MatSeqSBAIJSetColumnIndices_SeqSBAIJ(Mat mat,PetscInt *indices)
    1077: {
    1078:   Mat_SeqSBAIJ   *baij = (Mat_SeqSBAIJ*)mat->data;
    1079:   PetscInt       i,nz,n;

    1083:   nz = baij->maxnz;
    1084:   n  = mat->cmap->n;
    1085:   for (i=0; i<nz; i++) baij->j[i] = indices[i];

    1087:   baij->nz = nz;
    1088:   for (i=0; i<n; i++) baij->ilen[i] = baij->imax[i];

    1090:   MatSetOption(mat,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);
    1091:   return(0);
    1092: }

    1094: /*@
    1095:   MatSeqSBAIJSetColumnIndices - Set the column indices for all the rows
    1096:   in the matrix.

    1098:   Input Parameters:
    1099:   +  mat     - the SeqSBAIJ matrix
    1100:   -  indices - the column indices

    1102:   Level: advanced

    1104:   Notes:
    1105:   This can be called if you have precomputed the nonzero structure of the
    1106:   matrix and want to provide it to the matrix object to improve the performance
    1107:   of the MatSetValues() operation.

    1109:   You MUST have set the correct numbers of nonzeros per row in the call to
    1110:   MatCreateSeqSBAIJ(), and the columns indices MUST be sorted.

    1112:   MUST be called before any calls to MatSetValues()

    1114:   .seealso: MatCreateSeqSBAIJ
    1115: @*/
    1116: PetscErrorCode  MatSeqSBAIJSetColumnIndices(Mat mat,PetscInt *indices)
    1117: {

    1123:   PetscUseMethod(mat,"MatSeqSBAIJSetColumnIndices_C",(Mat,PetscInt*),(mat,indices));
    1124:   return(0);
    1125: }

    1127: PetscErrorCode MatCopy_SeqSBAIJ(Mat A,Mat B,MatStructure str)
    1128: {
    1130:   PetscBool      isbaij;

    1133:   PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"");
    1134:   if (!isbaij) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name);
    1135:   /* If the two matrices have the same copy implementation and nonzero pattern, use fast copy. */
    1136:   if (str == SAME_NONZERO_PATTERN && A->ops->copy == B->ops->copy) {
    1137:     Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
    1138:     Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ*)B->data;

    1140:     if (a->i[a->mbs] != b->i[b->mbs]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different");
    1141:     if (a->mbs != b->mbs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of rows in two matrices are different");
    1142:     if (a->bs2 != b->bs2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Different block size");
    1143:     PetscArraycpy(b->a,a->a,a->bs2*a->i[a->mbs]);
    1144:     PetscObjectStateIncrease((PetscObject)B);
    1145:   } else {
    1146:     MatGetRowUpperTriangular(A);
    1147:     MatCopy_Basic(A,B,str);
    1148:     MatRestoreRowUpperTriangular(A);
    1149:   }
    1150:   return(0);
    1151: }

    1153: PetscErrorCode MatSetUp_SeqSBAIJ(Mat A)
    1154: {

    1158:   MatSeqSBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,NULL);
    1159:   return(0);
    1160: }

    1162: static PetscErrorCode MatSeqSBAIJGetArray_SeqSBAIJ(Mat A,PetscScalar *array[])
    1163: {
    1164:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;

    1167:   *array = a->a;
    1168:   return(0);
    1169: }

    1171: static PetscErrorCode MatSeqSBAIJRestoreArray_SeqSBAIJ(Mat A,PetscScalar *array[])
    1172: {
    1174:   *array = NULL;
    1175:   return(0);
    1176: }

    1178: PetscErrorCode MatAXPYGetPreallocation_SeqSBAIJ(Mat Y,Mat X,PetscInt *nnz)
    1179: {
    1180:   PetscInt       bs = Y->rmap->bs,mbs = Y->rmap->N/bs;
    1181:   Mat_SeqSBAIJ   *x = (Mat_SeqSBAIJ*)X->data;
    1182:   Mat_SeqSBAIJ   *y = (Mat_SeqSBAIJ*)Y->data;

    1186:   /* Set the number of nonzeros in the new matrix */
    1187:   MatAXPYGetPreallocation_SeqX_private(mbs,x->i,x->j,y->i,y->j,nnz);
    1188:   return(0);
    1189: }

    1191: PetscErrorCode MatAXPY_SeqSBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
    1192: {
    1193:   Mat_SeqSBAIJ   *x=(Mat_SeqSBAIJ*)X->data, *y=(Mat_SeqSBAIJ*)Y->data;
    1195:   PetscInt       bs=Y->rmap->bs,bs2=bs*bs;
    1196:   PetscBLASInt   one = 1;

    1199:   if (str == UNKNOWN_NONZERO_PATTERN || (PetscDefined(USE_DEBUG) && str == SAME_NONZERO_PATTERN)) {
    1200:     PetscBool e = x->nz == y->nz && x->mbs == y->mbs ? PETSC_TRUE : PETSC_FALSE;
    1201:     if (e) {
    1202:       PetscArraycmp(x->i,y->i,x->mbs+1,&e);
    1203:       if (e) {
    1204:         PetscArraycmp(x->j,y->j,x->i[x->mbs],&e);
    1205:         if (e) str = SAME_NONZERO_PATTERN;
    1206:       }
    1207:     }
    1208:     if (!e && str == SAME_NONZERO_PATTERN) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"MatStructure is not SAME_NONZERO_PATTERN");
    1209:   }
    1210:   if (str == SAME_NONZERO_PATTERN) {
    1211:     PetscScalar  alpha = a;
    1212:     PetscBLASInt bnz;
    1213:     PetscBLASIntCast(x->nz*bs2,&bnz);
    1214:     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
    1215:     PetscObjectStateIncrease((PetscObject)Y);
    1216:   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
    1217:     MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);
    1218:     MatAXPY_Basic(Y,a,X,str);
    1219:     MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);
    1220:   } else {
    1221:     Mat      B;
    1222:     PetscInt *nnz;
    1223:     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
    1224:     MatGetRowUpperTriangular(X);
    1225:     MatGetRowUpperTriangular(Y);
    1226:     PetscMalloc1(Y->rmap->N,&nnz);
    1227:     MatCreate(PetscObjectComm((PetscObject)Y),&B);
    1228:     PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);
    1229:     MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);
    1230:     MatSetBlockSizesFromMats(B,Y,Y);
    1231:     MatSetType(B,((PetscObject)Y)->type_name);
    1232:     MatAXPYGetPreallocation_SeqSBAIJ(Y,X,nnz);
    1233:     MatSeqSBAIJSetPreallocation(B,bs,0,nnz);

    1235:     MatAXPY_BasicWithPreallocation(B,Y,a,X,str);

    1237:     MatHeaderReplace(Y,&B);
    1238:     PetscFree(nnz);
    1239:     MatRestoreRowUpperTriangular(X);
    1240:     MatRestoreRowUpperTriangular(Y);
    1241:   }
    1242:   return(0);
    1243: }

    1245: PetscErrorCode MatIsSymmetric_SeqSBAIJ(Mat A,PetscReal tol,PetscBool  *flg)
    1246: {
    1248:   *flg = PETSC_TRUE;
    1249:   return(0);
    1250: }

    1252: PetscErrorCode MatIsStructurallySymmetric_SeqSBAIJ(Mat A,PetscBool  *flg)
    1253: {
    1255:   *flg = PETSC_TRUE;
    1256:   return(0);
    1257: }

    1259: PetscErrorCode MatIsHermitian_SeqSBAIJ(Mat A,PetscReal tol,PetscBool  *flg)
    1260: {
    1262:   *flg = PETSC_FALSE;
    1263:   return(0);
    1264: }

    1266: PetscErrorCode MatConjugate_SeqSBAIJ(Mat A)
    1267: {
    1268: #if defined(PETSC_USE_COMPLEX)
    1269:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
    1270:   PetscInt     i,nz = a->bs2*a->i[a->mbs];
    1271:   MatScalar    *aa = a->a;

    1274:   for (i=0; i<nz; i++) aa[i] = PetscConj(aa[i]);
    1275: #else
    1277: #endif
    1278:   return(0);
    1279: }

    1281: PetscErrorCode MatRealPart_SeqSBAIJ(Mat A)
    1282: {
    1283:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
    1284:   PetscInt     i,nz = a->bs2*a->i[a->mbs];
    1285:   MatScalar    *aa = a->a;

    1288:   for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]);
    1289:   return(0);
    1290: }

    1292: PetscErrorCode MatImaginaryPart_SeqSBAIJ(Mat A)
    1293: {
    1294:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
    1295:   PetscInt     i,nz = a->bs2*a->i[a->mbs];
    1296:   MatScalar    *aa = a->a;

    1299:   for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
    1300:   return(0);
    1301: }

    1303: PetscErrorCode MatZeroRowsColumns_SeqSBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b)
    1304: {
    1305:   Mat_SeqSBAIJ      *baij=(Mat_SeqSBAIJ*)A->data;
    1306:   PetscErrorCode    ierr;
    1307:   PetscInt          i,j,k,count;
    1308:   PetscInt          bs   =A->rmap->bs,bs2=baij->bs2,row,col;
    1309:   PetscScalar       zero = 0.0;
    1310:   MatScalar         *aa;
    1311:   const PetscScalar *xx;
    1312:   PetscScalar       *bb;
    1313:   PetscBool         *zeroed,vecs = PETSC_FALSE;

    1316:   /* fix right hand side if needed */
    1317:   if (x && b) {
    1318:     VecGetArrayRead(x,&xx);
    1319:     VecGetArray(b,&bb);
    1320:     vecs = PETSC_TRUE;
    1321:   }

    1323:   /* zero the columns */
    1324:   PetscCalloc1(A->rmap->n,&zeroed);
    1325:   for (i=0; i<is_n; i++) {
    1326:     if (is_idx[i] < 0 || is_idx[i] >= A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",is_idx[i]);
    1327:     zeroed[is_idx[i]] = PETSC_TRUE;
    1328:   }
    1329:   if (vecs) {
    1330:     for (i=0; i<A->rmap->N; i++) {
    1331:       row = i/bs;
    1332:       for (j=baij->i[row]; j<baij->i[row+1]; j++) {
    1333:         for (k=0; k<bs; k++) {
    1334:           col = bs*baij->j[j] + k;
    1335:           if (col <= i) continue;
    1336:           aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k;
    1337:           if (!zeroed[i] && zeroed[col]) bb[i]   -= aa[0]*xx[col];
    1338:           if (zeroed[i] && !zeroed[col]) bb[col] -= aa[0]*xx[i];
    1339:         }
    1340:       }
    1341:     }
    1342:     for (i=0; i<is_n; i++) bb[is_idx[i]] = diag*xx[is_idx[i]];
    1343:   }

    1345:   for (i=0; i<A->rmap->N; i++) {
    1346:     if (!zeroed[i]) {
    1347:       row = i/bs;
    1348:       for (j=baij->i[row]; j<baij->i[row+1]; j++) {
    1349:         for (k=0; k<bs; k++) {
    1350:           col = bs*baij->j[j] + k;
    1351:           if (zeroed[col]) {
    1352:             aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k;
    1353:             aa[0] = 0.0;
    1354:           }
    1355:         }
    1356:       }
    1357:     }
    1358:   }
    1359:   PetscFree(zeroed);
    1360:   if (vecs) {
    1361:     VecRestoreArrayRead(x,&xx);
    1362:     VecRestoreArray(b,&bb);
    1363:   }

    1365:   /* zero the rows */
    1366:   for (i=0; i<is_n; i++) {
    1367:     row   = is_idx[i];
    1368:     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
    1369:     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
    1370:     for (k=0; k<count; k++) {
    1371:       aa[0] =  zero;
    1372:       aa   += bs;
    1373:     }
    1374:     if (diag != 0.0) {
    1375:       (*A->ops->setvalues)(A,1,&row,1,&row,&diag,INSERT_VALUES);
    1376:     }
    1377:   }
    1378:   MatAssemblyEnd_SeqSBAIJ(A,MAT_FINAL_ASSEMBLY);
    1379:   return(0);
    1380: }

    1382: PetscErrorCode MatShift_SeqSBAIJ(Mat Y,PetscScalar a)
    1383: {
    1385:   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)Y->data;

    1388:   if (!Y->preallocated || !aij->nz) {
    1389:     MatSeqSBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL);
    1390:   }
    1391:   MatShift_Basic(Y,a);
    1392:   return(0);
    1393: }

    1395: /* -------------------------------------------------------------------*/
    1396: static struct _MatOps MatOps_Values = {MatSetValues_SeqSBAIJ,
    1397:                                        MatGetRow_SeqSBAIJ,
    1398:                                        MatRestoreRow_SeqSBAIJ,
    1399:                                        MatMult_SeqSBAIJ_N,
    1400:                                /*  4*/ MatMultAdd_SeqSBAIJ_N,
    1401:                                        MatMult_SeqSBAIJ_N,       /* transpose versions are same as non-transpose versions */
    1402:                                        MatMultAdd_SeqSBAIJ_N,
    1403:                                        NULL,
    1404:                                        NULL,
    1405:                                        NULL,
    1406:                                /* 10*/ NULL,
    1407:                                        NULL,
    1408:                                        MatCholeskyFactor_SeqSBAIJ,
    1409:                                        MatSOR_SeqSBAIJ,
    1410:                                        MatTranspose_SeqSBAIJ,
    1411:                                /* 15*/ MatGetInfo_SeqSBAIJ,
    1412:                                        MatEqual_SeqSBAIJ,
    1413:                                        MatGetDiagonal_SeqSBAIJ,
    1414:                                        MatDiagonalScale_SeqSBAIJ,
    1415:                                        MatNorm_SeqSBAIJ,
    1416:                                /* 20*/ NULL,
    1417:                                        MatAssemblyEnd_SeqSBAIJ,
    1418:                                        MatSetOption_SeqSBAIJ,
    1419:                                        MatZeroEntries_SeqSBAIJ,
    1420:                                /* 24*/ NULL,
    1421:                                        NULL,
    1422:                                        NULL,
    1423:                                        NULL,
    1424:                                        NULL,
    1425:                                /* 29*/ MatSetUp_SeqSBAIJ,
    1426:                                        NULL,
    1427:                                        NULL,
    1428:                                        NULL,
    1429:                                        NULL,
    1430:                                /* 34*/ MatDuplicate_SeqSBAIJ,
    1431:                                        NULL,
    1432:                                        NULL,
    1433:                                        NULL,
    1434:                                        MatICCFactor_SeqSBAIJ,
    1435:                                /* 39*/ MatAXPY_SeqSBAIJ,
    1436:                                        MatCreateSubMatrices_SeqSBAIJ,
    1437:                                        MatIncreaseOverlap_SeqSBAIJ,
    1438:                                        MatGetValues_SeqSBAIJ,
    1439:                                        MatCopy_SeqSBAIJ,
    1440:                                /* 44*/ NULL,
    1441:                                        MatScale_SeqSBAIJ,
    1442:                                        MatShift_SeqSBAIJ,
    1443:                                        NULL,
    1444:                                        MatZeroRowsColumns_SeqSBAIJ,
    1445:                                /* 49*/ NULL,
    1446:                                        MatGetRowIJ_SeqSBAIJ,
    1447:                                        MatRestoreRowIJ_SeqSBAIJ,
    1448:                                        NULL,
    1449:                                        NULL,
    1450:                                /* 54*/ NULL,
    1451:                                        NULL,
    1452:                                        NULL,
    1453:                                        MatPermute_SeqSBAIJ,
    1454:                                        MatSetValuesBlocked_SeqSBAIJ,
    1455:                                /* 59*/ MatCreateSubMatrix_SeqSBAIJ,
    1456:                                        NULL,
    1457:                                        NULL,
    1458:                                        NULL,
    1459:                                        NULL,
    1460:                                /* 64*/ NULL,
    1461:                                        NULL,
    1462:                                        NULL,
    1463:                                        NULL,
    1464:                                        NULL,
    1465:                                /* 69*/ MatGetRowMaxAbs_SeqSBAIJ,
    1466:                                        NULL,
    1467:                                        MatConvert_MPISBAIJ_Basic,
    1468:                                        NULL,
    1469:                                        NULL,
    1470:                                /* 74*/ NULL,
    1471:                                        NULL,
    1472:                                        NULL,
    1473:                                        NULL,
    1474:                                        NULL,
    1475:                                /* 79*/ NULL,
    1476:                                        NULL,
    1477:                                        NULL,
    1478:                                        MatGetInertia_SeqSBAIJ,
    1479:                                        MatLoad_SeqSBAIJ,
    1480:                                /* 84*/ MatIsSymmetric_SeqSBAIJ,
    1481:                                        MatIsHermitian_SeqSBAIJ,
    1482:                                        MatIsStructurallySymmetric_SeqSBAIJ,
    1483:                                        NULL,
    1484:                                        NULL,
    1485:                                /* 89*/ NULL,
    1486:                                        NULL,
    1487:                                        NULL,
    1488:                                        NULL,
    1489:                                        NULL,
    1490:                                /* 94*/ NULL,
    1491:                                        NULL,
    1492:                                        NULL,
    1493:                                        NULL,
    1494:                                        NULL,
    1495:                                /* 99*/ NULL,
    1496:                                        NULL,
    1497:                                        NULL,
    1498:                                        MatConjugate_SeqSBAIJ,
    1499:                                        NULL,
    1500:                                /*104*/ NULL,
    1501:                                        MatRealPart_SeqSBAIJ,
    1502:                                        MatImaginaryPart_SeqSBAIJ,
    1503:                                        MatGetRowUpperTriangular_SeqSBAIJ,
    1504:                                        MatRestoreRowUpperTriangular_SeqSBAIJ,
    1505:                                /*109*/ NULL,
    1506:                                        NULL,
    1507:                                        NULL,
    1508:                                        NULL,
    1509:                                        MatMissingDiagonal_SeqSBAIJ,
    1510:                                /*114*/ NULL,
    1511:                                        NULL,
    1512:                                        NULL,
    1513:                                        NULL,
    1514:                                        NULL,
    1515:                                /*119*/ NULL,
    1516:                                        NULL,
    1517:                                        NULL,
    1518:                                        NULL,
    1519:                                        NULL,
    1520:                                /*124*/ NULL,
    1521:                                        NULL,
    1522:                                        NULL,
    1523:                                        NULL,
    1524:                                        NULL,
    1525:                                /*129*/ NULL,
    1526:                                        NULL,
    1527:                                        NULL,
    1528:                                        NULL,
    1529:                                        NULL,
    1530:                                /*134*/ NULL,
    1531:                                        NULL,
    1532:                                        NULL,
    1533:                                        NULL,
    1534:                                        NULL,
    1535:                                /*139*/ MatSetBlockSizes_Default,
    1536:                                        NULL,
    1537:                                        NULL,
    1538:                                        NULL,
    1539:                                        NULL,
    1540:                                 /*144*/MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ
    1541: };

    1543: PetscErrorCode  MatStoreValues_SeqSBAIJ(Mat mat)
    1544: {
    1545:   Mat_SeqSBAIJ   *aij = (Mat_SeqSBAIJ*)mat->data;
    1546:   PetscInt       nz   = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2;

    1550:   if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");

    1552:   /* allocate space for values if not already there */
    1553:   if (!aij->saved_values) {
    1554:     PetscMalloc1(nz+1,&aij->saved_values);
    1555:   }

    1557:   /* copy values over */
    1558:   PetscArraycpy(aij->saved_values,aij->a,nz);
    1559:   return(0);
    1560: }

    1562: PetscErrorCode  MatRetrieveValues_SeqSBAIJ(Mat mat)
    1563: {
    1564:   Mat_SeqSBAIJ   *aij = (Mat_SeqSBAIJ*)mat->data;
    1566:   PetscInt       nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2;

    1569:   if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
    1570:   if (!aij->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");

    1572:   /* copy values over */
    1573:   PetscArraycpy(aij->a,aij->saved_values,nz);
    1574:   return(0);
    1575: }

    1577: static PetscErrorCode  MatSeqSBAIJSetPreallocation_SeqSBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz)
    1578: {
    1579:   Mat_SeqSBAIJ   *b = (Mat_SeqSBAIJ*)B->data;
    1581:   PetscInt       i,mbs,nbs,bs2;
    1582:   PetscBool      skipallocation = PETSC_FALSE,flg = PETSC_FALSE,realalloc = PETSC_FALSE;

    1585:   if (nz >= 0 || nnz) realalloc = PETSC_TRUE;

    1587:   MatSetBlockSize(B,PetscAbs(bs));
    1588:   PetscLayoutSetUp(B->rmap);
    1589:   PetscLayoutSetUp(B->cmap);
    1590:   if (B->rmap->N > B->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"SEQSBAIJ matrix cannot have more rows %D than columns %D",B->rmap->N,B->cmap->N);
    1591:   PetscLayoutGetBlockSize(B->rmap,&bs);

    1593:   B->preallocated = PETSC_TRUE;

    1595:   mbs = B->rmap->N/bs;
    1596:   nbs = B->cmap->n/bs;
    1597:   bs2 = bs*bs;

    1599:   if (mbs*bs != B->rmap->N || nbs*bs!=B->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number rows, cols must be divisible by blocksize");

    1601:   if (nz == MAT_SKIP_ALLOCATION) {
    1602:     skipallocation = PETSC_TRUE;
    1603:     nz             = 0;
    1604:   }

    1606:   if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 3;
    1607:   if (nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz);
    1608:   if (nnz) {
    1609:     for (i=0; i<mbs; i++) {
    1610:       if (nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]);
    1611:       if (nnz[i] > nbs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D block rowlength %D",i,nnz[i],nbs);
    1612:     }
    1613:   }

    1615:   B->ops->mult             = MatMult_SeqSBAIJ_N;
    1616:   B->ops->multadd          = MatMultAdd_SeqSBAIJ_N;
    1617:   B->ops->multtranspose    = MatMult_SeqSBAIJ_N;
    1618:   B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_N;

    1620:   PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_no_unroll",&flg,NULL);
    1621:   if (!flg) {
    1622:     switch (bs) {
    1623:     case 1:
    1624:       B->ops->mult             = MatMult_SeqSBAIJ_1;
    1625:       B->ops->multadd          = MatMultAdd_SeqSBAIJ_1;
    1626:       B->ops->multtranspose    = MatMult_SeqSBAIJ_1;
    1627:       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_1;
    1628:       break;
    1629:     case 2:
    1630:       B->ops->mult             = MatMult_SeqSBAIJ_2;
    1631:       B->ops->multadd          = MatMultAdd_SeqSBAIJ_2;
    1632:       B->ops->multtranspose    = MatMult_SeqSBAIJ_2;
    1633:       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_2;
    1634:       break;
    1635:     case 3:
    1636:       B->ops->mult             = MatMult_SeqSBAIJ_3;
    1637:       B->ops->multadd          = MatMultAdd_SeqSBAIJ_3;
    1638:       B->ops->multtranspose    = MatMult_SeqSBAIJ_3;
    1639:       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_3;
    1640:       break;
    1641:     case 4:
    1642:       B->ops->mult             = MatMult_SeqSBAIJ_4;
    1643:       B->ops->multadd          = MatMultAdd_SeqSBAIJ_4;
    1644:       B->ops->multtranspose    = MatMult_SeqSBAIJ_4;
    1645:       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_4;
    1646:       break;
    1647:     case 5:
    1648:       B->ops->mult             = MatMult_SeqSBAIJ_5;
    1649:       B->ops->multadd          = MatMultAdd_SeqSBAIJ_5;
    1650:       B->ops->multtranspose    = MatMult_SeqSBAIJ_5;
    1651:       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_5;
    1652:       break;
    1653:     case 6:
    1654:       B->ops->mult             = MatMult_SeqSBAIJ_6;
    1655:       B->ops->multadd          = MatMultAdd_SeqSBAIJ_6;
    1656:       B->ops->multtranspose    = MatMult_SeqSBAIJ_6;
    1657:       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_6;
    1658:       break;
    1659:     case 7:
    1660:       B->ops->mult             = MatMult_SeqSBAIJ_7;
    1661:       B->ops->multadd          = MatMultAdd_SeqSBAIJ_7;
    1662:       B->ops->multtranspose    = MatMult_SeqSBAIJ_7;
    1663:       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_7;
    1664:       break;
    1665:     }
    1666:   }

    1668:   b->mbs = mbs;
    1669:   b->nbs = nbs;
    1670:   if (!skipallocation) {
    1671:     if (!b->imax) {
    1672:       PetscMalloc2(mbs,&b->imax,mbs,&b->ilen);

    1674:       b->free_imax_ilen = PETSC_TRUE;

    1676:       PetscLogObjectMemory((PetscObject)B,2*mbs*sizeof(PetscInt));
    1677:     }
    1678:     if (!nnz) {
    1679:       if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
    1680:       else if (nz <= 0) nz = 1;
    1681:       nz = PetscMin(nbs,nz);
    1682:       for (i=0; i<mbs; i++) b->imax[i] = nz;
    1683:       PetscIntMultError(nz,mbs,&nz);
    1684:     } else {
    1685:       PetscInt64 nz64 = 0;
    1686:       for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz64 += nnz[i];}
    1687:       PetscIntCast(nz64,&nz);
    1688:     }
    1689:     /* b->ilen will count nonzeros in each block row so far. */
    1690:     for (i=0; i<mbs; i++) b->ilen[i] = 0;
    1691:     /* nz=(nz+mbs)/2; */ /* total diagonal and superdiagonal nonzero blocks */

    1693:     /* allocate the matrix space */
    1694:     MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);
    1695:     PetscMalloc3(bs2*nz,&b->a,nz,&b->j,B->rmap->N+1,&b->i);
    1696:     PetscLogObjectMemory((PetscObject)B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));
    1697:     PetscArrayzero(b->a,nz*bs2);
    1698:     PetscArrayzero(b->j,nz);

    1700:     b->singlemalloc = PETSC_TRUE;

    1702:     /* pointer to beginning of each row */
    1703:     b->i[0] = 0;
    1704:     for (i=1; i<mbs+1; i++) b->i[i] = b->i[i-1] + b->imax[i-1];

    1706:     b->free_a  = PETSC_TRUE;
    1707:     b->free_ij = PETSC_TRUE;
    1708:   } else {
    1709:     b->free_a  = PETSC_FALSE;
    1710:     b->free_ij = PETSC_FALSE;
    1711:   }

    1713:   b->bs2     = bs2;
    1714:   b->nz      = 0;
    1715:   b->maxnz   = nz;
    1716:   b->inew    = NULL;
    1717:   b->jnew    = NULL;
    1718:   b->anew    = NULL;
    1719:   b->a2anew  = NULL;
    1720:   b->permute = PETSC_FALSE;

    1722:   B->was_assembled = PETSC_FALSE;
    1723:   B->assembled     = PETSC_FALSE;
    1724:   if (realalloc) {MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);}
    1725:   return(0);
    1726: }

    1728: PetscErrorCode MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[], const PetscScalar V[])
    1729: {
    1730:   PetscInt       i,j,m,nz,anz, nz_max=0,*nnz;
    1731:   PetscScalar    *values=NULL;
    1732:   PetscBool      roworiented = ((Mat_SeqSBAIJ*)B->data)->roworiented;

    1736:   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
    1737:   PetscLayoutSetBlockSize(B->rmap,bs);
    1738:   PetscLayoutSetBlockSize(B->cmap,bs);
    1739:   PetscLayoutSetUp(B->rmap);
    1740:   PetscLayoutSetUp(B->cmap);
    1741:   PetscLayoutGetBlockSize(B->rmap,&bs);
    1742:   m      = B->rmap->n/bs;

    1744:   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
    1745:   PetscMalloc1(m+1,&nnz);
    1746:   for (i=0; i<m; i++) {
    1747:     nz = ii[i+1] - ii[i];
    1748:     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D has a negative number of columns %D",i,nz);
    1749:     anz = 0;
    1750:     for (j=0; j<nz; j++) {
    1751:       /* count only values on the diagonal or above */
    1752:       if (jj[ii[i] + j] >= i) {
    1753:         anz = nz - j;
    1754:         break;
    1755:       }
    1756:     }
    1757:     nz_max = PetscMax(nz_max,anz);
    1758:     nnz[i] = anz;
    1759:   }
    1760:   MatSeqSBAIJSetPreallocation(B,bs,0,nnz);
    1761:   PetscFree(nnz);

    1763:   values = (PetscScalar*)V;
    1764:   if (!values) {
    1765:     PetscCalloc1(bs*bs*nz_max,&values);
    1766:   }
    1767:   for (i=0; i<m; i++) {
    1768:     PetscInt          ncols  = ii[i+1] - ii[i];
    1769:     const PetscInt    *icols = jj + ii[i];
    1770:     if (!roworiented || bs == 1) {
    1771:       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
    1772:       MatSetValuesBlocked_SeqSBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES);
    1773:     } else {
    1774:       for (j=0; j<ncols; j++) {
    1775:         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
    1776:         MatSetValuesBlocked_SeqSBAIJ(B,1,&i,1,&icols[j],svals,INSERT_VALUES);
    1777:       }
    1778:     }
    1779:   }
    1780:   if (!V) { PetscFree(values); }
    1781:   MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);
    1782:   MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);
    1783:   MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);
    1784:   return(0);
    1785: }

    1787: /*
    1788:    This is used to set the numeric factorization for both Cholesky and ICC symbolic factorization
    1789: */
    1790: PetscErrorCode MatSeqSBAIJSetNumericFactorization_inplace(Mat B,PetscBool natural)
    1791: {
    1793:   PetscBool      flg = PETSC_FALSE;
    1794:   PetscInt       bs  = B->rmap->bs;

    1797:   PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_no_unroll",&flg,NULL);
    1798:   if (flg) bs = 8;

    1800:   if (!natural) {
    1801:     switch (bs) {
    1802:     case 1:
    1803:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1_inplace;
    1804:       break;
    1805:     case 2:
    1806:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2;
    1807:       break;
    1808:     case 3:
    1809:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3;
    1810:       break;
    1811:     case 4:
    1812:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4;
    1813:       break;
    1814:     case 5:
    1815:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5;
    1816:       break;
    1817:     case 6:
    1818:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6;
    1819:       break;
    1820:     case 7:
    1821:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7;
    1822:       break;
    1823:     default:
    1824:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_N;
    1825:       break;
    1826:     }
    1827:   } else {
    1828:     switch (bs) {
    1829:     case 1:
    1830:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1_NaturalOrdering_inplace;
    1831:       break;
    1832:     case 2:
    1833:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering;
    1834:       break;
    1835:     case 3:
    1836:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering;
    1837:       break;
    1838:     case 4:
    1839:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4_NaturalOrdering;
    1840:       break;
    1841:     case 5:
    1842:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering;
    1843:       break;
    1844:     case 6:
    1845:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6_NaturalOrdering;
    1846:       break;
    1847:     case 7:
    1848:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7_NaturalOrdering;
    1849:       break;
    1850:     default:
    1851:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_N_NaturalOrdering;
    1852:       break;
    1853:     }
    1854:   }
    1855:   return(0);
    1856: }

    1858: PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*);
    1859: PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqBAIJ(Mat,MatType,MatReuse,Mat*);
    1860: static PetscErrorCode MatFactorGetSolverType_petsc(Mat A,MatSolverType *type)
    1861: {
    1863:   *type = MATSOLVERPETSC;
    1864:   return(0);
    1865: }

    1867: PETSC_INTERN PetscErrorCode MatGetFactor_seqsbaij_petsc(Mat A,MatFactorType ftype,Mat *B)
    1868: {
    1869:   PetscInt       n = A->rmap->n;

    1873: #if defined(PETSC_USE_COMPLEX)
    1874:   if (A->hermitian && !A->symmetric && (ftype == MAT_FACTOR_CHOLESKY||ftype == MAT_FACTOR_ICC)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Hermitian CHOLESKY or ICC Factor is not supported");
    1875: #endif

    1877:   MatCreate(PetscObjectComm((PetscObject)A),B);
    1878:   MatSetSizes(*B,n,n,n,n);
    1879:   if (ftype == MAT_FACTOR_CHOLESKY || ftype == MAT_FACTOR_ICC) {
    1880:     MatSetType(*B,MATSEQSBAIJ);
    1881:     MatSeqSBAIJSetPreallocation(*B,A->rmap->bs,MAT_SKIP_ALLOCATION,NULL);

    1883:     (*B)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqSBAIJ;
    1884:     (*B)->ops->iccfactorsymbolic      = MatICCFactorSymbolic_SeqSBAIJ;
    1885:     PetscStrallocpy(MATORDERINGNATURAL,(char**)&(*B)->preferredordering[MAT_FACTOR_CHOLESKY]);
    1886:     PetscStrallocpy(MATORDERINGNATURAL,(char**)&(*B)->preferredordering[MAT_FACTOR_ICC]);
    1887:   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Factor type not supported");

    1889:   (*B)->factortype = ftype;
    1890:   (*B)->canuseordering = PETSC_TRUE;
    1891:   PetscFree((*B)->solvertype);
    1892:   PetscStrallocpy(MATSOLVERPETSC,&(*B)->solvertype);
    1893:   PetscObjectComposeFunction((PetscObject)*B,"MatFactorGetSolverType_C",MatFactorGetSolverType_petsc);
    1894:   return(0);
    1895: }

    1897: /*@C
    1898:    MatSeqSBAIJGetArray - gives access to the array where the data for a MATSEQSBAIJ matrix is stored

    1900:    Not Collective

    1902:    Input Parameter:
    1903: .  mat - a MATSEQSBAIJ matrix

    1905:    Output Parameter:
    1906: .   array - pointer to the data

    1908:    Level: intermediate

    1910: .seealso: MatSeqSBAIJRestoreArray(), MatSeqAIJGetArray(), MatSeqAIJRestoreArray()
    1911: @*/
    1912: PetscErrorCode  MatSeqSBAIJGetArray(Mat A,PetscScalar **array)
    1913: {

    1917:   PetscUseMethod(A,"MatSeqSBAIJGetArray_C",(Mat,PetscScalar**),(A,array));
    1918:   return(0);
    1919: }

    1921: /*@C
    1922:    MatSeqSBAIJRestoreArray - returns access to the array where the data for a MATSEQSBAIJ matrix is stored obtained by MatSeqSBAIJGetArray()

    1924:    Not Collective

    1926:    Input Parameters:
    1927: +  mat - a MATSEQSBAIJ matrix
    1928: -  array - pointer to the data

    1930:    Level: intermediate

    1932: .seealso: MatSeqSBAIJGetArray(), MatSeqAIJGetArray(), MatSeqAIJRestoreArray()
    1933: @*/
    1934: PetscErrorCode  MatSeqSBAIJRestoreArray(Mat A,PetscScalar **array)
    1935: {

    1939:   PetscUseMethod(A,"MatSeqSBAIJRestoreArray_C",(Mat,PetscScalar**),(A,array));
    1940:   return(0);
    1941: }

    1943: /*MC
    1944:   MATSEQSBAIJ - MATSEQSBAIJ = "seqsbaij" - A matrix type to be used for sequential symmetric block sparse matrices,
    1945:   based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.

    1947:   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
    1948:   can call MatSetOption(Mat, MAT_HERMITIAN).

    1950:   Options Database Keys:
    1951:   . -mat_type seqsbaij - sets the matrix type to "seqsbaij" during a call to MatSetFromOptions()

    1953:   Notes:
    1954:     By default if you insert values into the lower triangular part of the matrix they are simply ignored (since they are not
    1955:      stored and it is assumed they symmetric to the upper triangular). If you call MatSetOption(Mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_FALSE) or use
    1956:      the options database -mat_ignore_lower_triangular false it will generate an error if you try to set a value in the lower triangular portion.

    1958:     The number of rows in the matrix must be less than or equal to the number of columns

    1960:   Level: beginner

    1962:   .seealso: MatCreateSeqSBAIJ(), MatType, MATMPISBAIJ
    1963: M*/
    1964: PETSC_EXTERN PetscErrorCode MatCreate_SeqSBAIJ(Mat B)
    1965: {
    1966:   Mat_SeqSBAIJ   *b;
    1968:   PetscMPIInt    size;
    1969:   PetscBool      no_unroll = PETSC_FALSE,no_inode = PETSC_FALSE;

    1972:   MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);
    1973:   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1");

    1975:   PetscNewLog(B,&b);
    1976:   B->data = (void*)b;
    1977:   PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));

    1979:   B->ops->destroy    = MatDestroy_SeqSBAIJ;
    1980:   B->ops->view       = MatView_SeqSBAIJ;
    1981:   b->row             = NULL;
    1982:   b->icol            = NULL;
    1983:   b->reallocs        = 0;
    1984:   b->saved_values    = NULL;
    1985:   b->inode.limit     = 5;
    1986:   b->inode.max_limit = 5;

    1988:   b->roworiented        = PETSC_TRUE;
    1989:   b->nonew              = 0;
    1990:   b->diag               = NULL;
    1991:   b->solve_work         = NULL;
    1992:   b->mult_work          = NULL;
    1993:   B->spptr              = NULL;
    1994:   B->info.nz_unneeded   = (PetscReal)b->maxnz*b->bs2;
    1995:   b->keepnonzeropattern = PETSC_FALSE;

    1997:   b->inew    = NULL;
    1998:   b->jnew    = NULL;
    1999:   b->anew    = NULL;
    2000:   b->a2anew  = NULL;
    2001:   b->permute = PETSC_FALSE;

    2003:   b->ignore_ltriangular = PETSC_TRUE;

    2005:   PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_ignore_lower_triangular",&b->ignore_ltriangular,NULL);

    2007:   b->getrow_utriangular = PETSC_FALSE;

    2009:   PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_getrow_uppertriangular",&b->getrow_utriangular,NULL);

    2011:   PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJGetArray_C",MatSeqSBAIJGetArray_SeqSBAIJ);
    2012:   PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJRestoreArray_C",MatSeqSBAIJRestoreArray_SeqSBAIJ);
    2013:   PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSBAIJ);
    2014:   PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSBAIJ);
    2015:   PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetColumnIndices_C",MatSeqSBAIJSetColumnIndices_SeqSBAIJ);
    2016:   PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqaij_C",MatConvert_SeqSBAIJ_SeqAIJ);
    2017:   PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqbaij_C",MatConvert_SeqSBAIJ_SeqBAIJ);
    2018:   PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetPreallocation_C",MatSeqSBAIJSetPreallocation_SeqSBAIJ);
    2019:   PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetPreallocationCSR_C",MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ);
    2020: #if defined(PETSC_HAVE_ELEMENTAL)
    2021:   PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_elemental_C",MatConvert_SeqSBAIJ_Elemental);
    2022: #endif
    2023: #if defined(PETSC_HAVE_SCALAPACK)
    2024:   PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_scalapack_C",MatConvert_SBAIJ_ScaLAPACK);
    2025: #endif

    2027:   B->symmetric                  = PETSC_TRUE;
    2028:   B->structurally_symmetric     = PETSC_TRUE;
    2029:   B->symmetric_set              = PETSC_TRUE;
    2030:   B->structurally_symmetric_set = PETSC_TRUE;
    2031:   B->symmetric_eternal          = PETSC_TRUE;
    2032: #if defined(PETSC_USE_COMPLEX)
    2033:   B->hermitian                  = PETSC_FALSE;
    2034:   B->hermitian_set              = PETSC_FALSE;
    2035: #else
    2036:   B->hermitian                  = PETSC_TRUE;
    2037:   B->hermitian_set              = PETSC_TRUE;
    2038: #endif

    2040:   PetscObjectChangeTypeName((PetscObject)B,MATSEQSBAIJ);

    2042:   PetscOptionsBegin(PetscObjectComm((PetscObject)B),((PetscObject)B)->prefix,"Options for SEQSBAIJ matrix","Mat");
    2043:   PetscOptionsBool("-mat_no_unroll","Do not optimize for inodes (slower)",NULL,no_unroll,&no_unroll,NULL);
    2044:   if (no_unroll) {
    2045:     PetscInfo(B,"Not using Inode routines due to -mat_no_unroll\n");
    2046:   }
    2047:   PetscOptionsBool("-mat_no_inode","Do not optimize for inodes (slower)",NULL,no_inode,&no_inode,NULL);
    2048:   if (no_inode) {
    2049:     PetscInfo(B,"Not using Inode routines due to -mat_no_inode\n");
    2050:   }
    2051:   PetscOptionsInt("-mat_inode_limit","Do not use inodes larger then this value",NULL,b->inode.limit,&b->inode.limit,NULL);
    2052:   PetscOptionsEnd();
    2053:   b->inode.use = (PetscBool)(!(no_unroll || no_inode));
    2054:   if (b->inode.limit > b->inode.max_limit) b->inode.limit = b->inode.max_limit;
    2055:   return(0);
    2056: }

    2058: /*@C
    2059:    MatSeqSBAIJSetPreallocation - Creates a sparse symmetric matrix in block AIJ (block
    2060:    compressed row) format.  For good matrix assembly performance the
    2061:    user should preallocate the matrix storage by setting the parameter nz
    2062:    (or the array nnz).  By setting these parameters accurately, performance
    2063:    during matrix assembly can be increased by more than a factor of 50.

    2065:    Collective on Mat

    2067:    Input Parameters:
    2068: +  B - the symmetric matrix
    2069: .  bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
    2070:           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
    2071: .  nz - number of block nonzeros per block row (same for all rows)
    2072: -  nnz - array containing the number of block nonzeros in the upper triangular plus
    2073:          diagonal portion of each block (possibly different for each block row) or NULL

    2075:    Options Database Keys:
    2076: +   -mat_no_unroll - uses code that does not unroll the loops in the
    2077:                      block calculations (much slower)
    2078: -   -mat_block_size - size of the blocks to use (only works if a negative bs is passed in

    2080:    Level: intermediate

    2082:    Notes:
    2083:    Specify the preallocated storage with either nz or nnz (not both).
    2084:    Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
    2085:    allocation.  See Users-Manual: ch_mat for details.

    2087:    You can call MatGetInfo() to get information on how effective the preallocation was;
    2088:    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
    2089:    You can also run with the option -info and look for messages with the string
    2090:    malloc in them to see if additional memory allocation was needed.

    2092:    If the nnz parameter is given then the nz parameter is ignored

    2094: .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateSBAIJ()
    2095: @*/
    2096: PetscErrorCode  MatSeqSBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[])
    2097: {

    2104:   PetscTryMethod(B,"MatSeqSBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[]),(B,bs,nz,nnz));
    2105:   return(0);
    2106: }

    2108: /*@C
    2109:    MatSeqSBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values

    2111:    Input Parameters:
    2112: +  B - the matrix
    2113: .  bs - size of block, the blocks are ALWAYS square.
    2114: .  i - the indices into j for the start of each local row (starts with zero)
    2115: .  j - the column indices for each local row (starts with zero) these must be sorted for each row
    2116: -  v - optional values in the matrix

    2118:    Level: advanced

    2120:    Notes:
    2121:    The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED.  For example, C programs
    2122:    may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is
    2123:    over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
    2124:    MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
    2125:    block column and the second index is over columns within a block.

    2127:    Any entries below the diagonal are ignored

    2129:    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
    2130:    and usually the numerical values as well

    2132: .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValuesBlocked(), MatSeqSBAIJSetPreallocation(), MATSEQSBAIJ
    2133: @*/
    2134: PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
    2135: {

    2142:   PetscTryMethod(B,"MatSeqSBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));
    2143:   return(0);
    2144: }

    2146: /*@C
    2147:    MatCreateSeqSBAIJ - Creates a sparse symmetric matrix in block AIJ (block
    2148:    compressed row) format.  For good matrix assembly performance the
    2149:    user should preallocate the matrix storage by setting the parameter nz
    2150:    (or the array nnz).  By setting these parameters accurately, performance
    2151:    during matrix assembly can be increased by more than a factor of 50.

    2153:    Collective

    2155:    Input Parameters:
    2156: +  comm - MPI communicator, set to PETSC_COMM_SELF
    2157: .  bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
    2158:           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
    2159: .  m - number of rows, or number of columns
    2160: .  nz - number of block nonzeros per block row (same for all rows)
    2161: -  nnz - array containing the number of block nonzeros in the upper triangular plus
    2162:          diagonal portion of each block (possibly different for each block row) or NULL

    2164:    Output Parameter:
    2165: .  A - the symmetric matrix

    2167:    Options Database Keys:
    2168: +   -mat_no_unroll - uses code that does not unroll the loops in the
    2169:                      block calculations (much slower)
    2170: -   -mat_block_size - size of the blocks to use

    2172:    Level: intermediate

    2174:    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
    2175:    MatXXXXSetPreallocation() paradigm instead of this routine directly.
    2176:    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]

    2178:    Notes:
    2179:    The number of rows and columns must be divisible by blocksize.
    2180:    This matrix type does not support complex Hermitian operation.

    2182:    Specify the preallocated storage with either nz or nnz (not both).
    2183:    Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
    2184:    allocation.  See Users-Manual: ch_mat for details.

    2186:    If the nnz parameter is given then the nz parameter is ignored

    2188: .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateSBAIJ()
    2189: @*/
    2190: PetscErrorCode  MatCreateSeqSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A)
    2191: {

    2195:   MatCreate(comm,A);
    2196:   MatSetSizes(*A,m,n,m,n);
    2197:   MatSetType(*A,MATSEQSBAIJ);
    2198:   MatSeqSBAIJSetPreallocation(*A,bs,nz,(PetscInt*)nnz);
    2199:   return(0);
    2200: }

    2202: PetscErrorCode MatDuplicate_SeqSBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B)
    2203: {
    2204:   Mat            C;
    2205:   Mat_SeqSBAIJ   *c,*a = (Mat_SeqSBAIJ*)A->data;
    2207:   PetscInt       i,mbs = a->mbs,nz = a->nz,bs2 =a->bs2;

    2210:   if (a->i[mbs] != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupt matrix");

    2212:   *B   = NULL;
    2213:   MatCreate(PetscObjectComm((PetscObject)A),&C);
    2214:   MatSetSizes(C,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n);
    2215:   MatSetBlockSizesFromMats(C,A,A);
    2216:   MatSetType(C,MATSEQSBAIJ);
    2217:   c    = (Mat_SeqSBAIJ*)C->data;

    2219:   C->preallocated       = PETSC_TRUE;
    2220:   C->factortype         = A->factortype;
    2221:   c->row                = NULL;
    2222:   c->icol               = NULL;
    2223:   c->saved_values       = NULL;
    2224:   c->keepnonzeropattern = a->keepnonzeropattern;
    2225:   C->assembled          = PETSC_TRUE;

    2227:   PetscLayoutReference(A->rmap,&C->rmap);
    2228:   PetscLayoutReference(A->cmap,&C->cmap);
    2229:   c->bs2 = a->bs2;
    2230:   c->mbs = a->mbs;
    2231:   c->nbs = a->nbs;

    2233:   if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
    2234:     c->imax           = a->imax;
    2235:     c->ilen           = a->ilen;
    2236:     c->free_imax_ilen = PETSC_FALSE;
    2237:   } else {
    2238:     PetscMalloc2((mbs+1),&c->imax,(mbs+1),&c->ilen);
    2239:     PetscLogObjectMemory((PetscObject)C,2*(mbs+1)*sizeof(PetscInt));
    2240:     for (i=0; i<mbs; i++) {
    2241:       c->imax[i] = a->imax[i];
    2242:       c->ilen[i] = a->ilen[i];
    2243:     }
    2244:     c->free_imax_ilen = PETSC_TRUE;
    2245:   }

    2247:   /* allocate the matrix space */
    2248:   if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
    2249:     PetscMalloc1(bs2*nz,&c->a);
    2250:     PetscLogObjectMemory((PetscObject)C,nz*bs2*sizeof(MatScalar));
    2251:     c->i            = a->i;
    2252:     c->j            = a->j;
    2253:     c->singlemalloc = PETSC_FALSE;
    2254:     c->free_a       = PETSC_TRUE;
    2255:     c->free_ij      = PETSC_FALSE;
    2256:     c->parent       = A;
    2257:     PetscObjectReference((PetscObject)A);
    2258:     MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);
    2259:     MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);
    2260:   } else {
    2261:     PetscMalloc3(bs2*nz,&c->a,nz,&c->j,mbs+1,&c->i);
    2262:     PetscArraycpy(c->i,a->i,mbs+1);
    2263:     PetscLogObjectMemory((PetscObject)C,(mbs+1)*sizeof(PetscInt) + nz*(bs2*sizeof(MatScalar) + sizeof(PetscInt)));
    2264:     c->singlemalloc = PETSC_TRUE;
    2265:     c->free_a       = PETSC_TRUE;
    2266:     c->free_ij      = PETSC_TRUE;
    2267:   }
    2268:   if (mbs > 0) {
    2269:     if (cpvalues != MAT_SHARE_NONZERO_PATTERN) {
    2270:       PetscArraycpy(c->j,a->j,nz);
    2271:     }
    2272:     if (cpvalues == MAT_COPY_VALUES) {
    2273:       PetscArraycpy(c->a,a->a,bs2*nz);
    2274:     } else {
    2275:       PetscArrayzero(c->a,bs2*nz);
    2276:     }
    2277:     if (a->jshort) {
    2278:       /* cannot share jshort, it is reallocated in MatAssemblyEnd_SeqSBAIJ() */
    2279:       /* if the parent matrix is reassembled, this child matrix will never notice */
    2280:       PetscMalloc1(nz,&c->jshort);
    2281:       PetscLogObjectMemory((PetscObject)C,nz*sizeof(unsigned short));
    2282:       PetscArraycpy(c->jshort,a->jshort,nz);

    2284:       c->free_jshort = PETSC_TRUE;
    2285:     }
    2286:   }

    2288:   c->roworiented = a->roworiented;
    2289:   c->nonew       = a->nonew;

    2291:   if (a->diag) {
    2292:     if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
    2293:       c->diag      = a->diag;
    2294:       c->free_diag = PETSC_FALSE;
    2295:     } else {
    2296:       PetscMalloc1(mbs,&c->diag);
    2297:       PetscLogObjectMemory((PetscObject)C,mbs*sizeof(PetscInt));
    2298:       for (i=0; i<mbs; i++) c->diag[i] = a->diag[i];
    2299:       c->free_diag = PETSC_TRUE;
    2300:     }
    2301:   }
    2302:   c->nz         = a->nz;
    2303:   c->maxnz      = a->nz; /* Since we allocate exactly the right amount */
    2304:   c->solve_work = NULL;
    2305:   c->mult_work  = NULL;

    2307:   *B   = C;
    2308:   PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);
    2309:   return(0);
    2310: }

    2312: /* Used for both SeqBAIJ and SeqSBAIJ matrices */
    2313: #define MatLoad_SeqSBAIJ_Binary MatLoad_SeqBAIJ_Binary

    2315: PetscErrorCode MatLoad_SeqSBAIJ(Mat mat,PetscViewer viewer)
    2316: {
    2318:   PetscBool      isbinary;

    2321:   PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);
    2322:   if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name);
    2323:   MatLoad_SeqSBAIJ_Binary(mat,viewer);
    2324:   return(0);
    2325: }

    2327: /*@
    2328:      MatCreateSeqSBAIJWithArrays - Creates an sequential SBAIJ matrix using matrix elements
    2329:               (upper triangular entries in CSR format) provided by the user.

    2331:      Collective

    2333:    Input Parameters:
    2334: +  comm - must be an MPI communicator of size 1
    2335: .  bs - size of block
    2336: .  m - number of rows
    2337: .  n - number of columns
    2338: .  i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
    2339: .  j - column indices
    2340: -  a - matrix values

    2342:    Output Parameter:
    2343: .  mat - the matrix

    2345:    Level: advanced

    2347:    Notes:
    2348:        The i, j, and a arrays are not copied by this routine, the user must free these arrays
    2349:     once the matrix is destroyed

    2351:        You cannot set new nonzero locations into this matrix, that will generate an error.

    2353:        The i and j indices are 0 based

    2355:        When block size is greater than 1 the matrix values must be stored using the SBAIJ storage format (see the SBAIJ code to determine this). For block size of 1
    2356:        it is the regular CSR format excluding the lower triangular elements.

    2358: .seealso: MatCreate(), MatCreateSBAIJ(), MatCreateSeqSBAIJ()

    2360: @*/
    2361: PetscErrorCode  MatCreateSeqSBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt i[],PetscInt j[],PetscScalar a[],Mat *mat)
    2362: {
    2364:   PetscInt       ii;
    2365:   Mat_SeqSBAIJ   *sbaij;

    2368:   if (bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs);
    2369:   if (m > 0 && i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");

    2371:   MatCreate(comm,mat);
    2372:   MatSetSizes(*mat,m,n,m,n);
    2373:   MatSetType(*mat,MATSEQSBAIJ);
    2374:   MatSeqSBAIJSetPreallocation(*mat,bs,MAT_SKIP_ALLOCATION,NULL);
    2375:   sbaij = (Mat_SeqSBAIJ*)(*mat)->data;
    2376:   PetscMalloc2(m,&sbaij->imax,m,&sbaij->ilen);
    2377:   PetscLogObjectMemory((PetscObject)*mat,2*m*sizeof(PetscInt));

    2379:   sbaij->i = i;
    2380:   sbaij->j = j;
    2381:   sbaij->a = a;

    2383:   sbaij->singlemalloc   = PETSC_FALSE;
    2384:   sbaij->nonew          = -1;             /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/
    2385:   sbaij->free_a         = PETSC_FALSE;
    2386:   sbaij->free_ij        = PETSC_FALSE;
    2387:   sbaij->free_imax_ilen = PETSC_TRUE;

    2389:   for (ii=0; ii<m; ii++) {
    2390:     sbaij->ilen[ii] = sbaij->imax[ii] = i[ii+1] - i[ii];
    2391:     if (PetscUnlikelyDebug(i[ii+1] - i[ii] < 0)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]);
    2392:   }
    2393:   if (PetscDefined(USE_DEBUG)) {
    2394:     for (ii=0; ii<sbaij->i[m]; ii++) {
    2395:       if (j[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]);
    2396:       if (j[ii] > n - 1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]);
    2397:     }
    2398:   }

    2400:   MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);
    2401:   MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);
    2402:   return(0);
    2403: }

    2405: PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
    2406: {
    2408:   PetscMPIInt    size;

    2411:   MPI_Comm_size(comm,&size);
    2412:   if (size == 1 && scall == MAT_REUSE_MATRIX) {
    2413:     MatCopy(inmat,*outmat,SAME_NONZERO_PATTERN);
    2414:   } else {
    2415:     MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(comm,inmat,n,scall,outmat);
    2416:   }
    2417:   return(0);
    2418: }