Date: 2022-03-04T17:37:34+00:00

Actual source code: petscsf.h

      1: /*
      2:    A star forest (SF) describes a communication pattern
      3: */
      4: #if !defined(PETSCSF_H)
      5: #define PETSCSF_H
      6: #include <petscsys.h>
      7: #include <petscsftypes.h>
      8: #include <petscvec.h>

     10: PETSC_EXTERN PetscClassId PETSCSF_CLASSID;

     12: #define PETSCSFBASIC      "basic"
     13: #define PETSCSFNEIGHBOR   "neighbor"
     14: #define PETSCSFALLGATHERV "allgatherv"
     15: #define PETSCSFALLGATHER  "allgather"
     16: #define PETSCSFGATHERV    "gatherv"
     17: #define PETSCSFGATHER     "gather"
     18: #define PETSCSFALLTOALL   "alltoall"
     19: #define PETSCSFWINDOW     "window"

     21: /*E
     22:    PetscSFPattern - Pattern of the PetscSF graph

     24: $  PETSCSF_PATTERN_GENERAL   - A general graph. One sets the graph with PetscSFSetGraph() and usually does not use this enum directly.
     25: $  PETSCSF_PATTERN_ALLGATHER - A graph that every rank gathers all roots from all ranks (like MPI_Allgather/v). One sets the graph with PetscSFSetGraphWithPattern().
     26: $  PETSCSF_PATTERN_GATHER    - A graph that rank 0 gathers all roots from all ranks (like MPI_Gather/v with root=0). One sets the graph with PetscSFSetGraphWithPattern().
     27: $  PETSCSF_PATTERN_ALLTOALL  - A graph that every rank gathers different roots from all ranks (like MPI_Alltoall). One sets the graph with PetscSFSetGraphWithPattern().
     28:                                In an ALLTOALL graph, we assume each process has <size> leaves and <size> roots, with each leaf connecting to a remote root. Here <size> is
     29:                                the size of the communicator. This does not mean one can not communicate multiple data items between a pair of processes. One just needs to
     30:                                create a new MPI datatype for the multiple data items, e.g., by MPI_Type_contiguous.
     31:    Level: beginner

     33: .seealso: PetscSFSetGraph(), PetscSFSetGraphWithPattern()
     34: E*/
     35: typedef enum {PETSCSF_PATTERN_GENERAL=0,PETSCSF_PATTERN_ALLGATHER,PETSCSF_PATTERN_GATHER,PETSCSF_PATTERN_ALLTOALL} PetscSFPattern;

     37: /*E
     38:     PetscSFWindowSyncType - Type of synchronization for PETSCSFWINDOW

     40: $  PETSCSF_WINDOW_SYNC_FENCE - simplest model, synchronizing across communicator
     41: $  PETSCSF_WINDOW_SYNC_LOCK - passive model, less synchronous, requires less setup than PETSCSF_WINDOW_SYNC_ACTIVE, but may require more handshakes
     42: $  PETSCSF_WINDOW_SYNC_ACTIVE - active model, provides most information to MPI implementation, needs to construct 2-way process groups (more setup than PETSCSF_WINDOW_SYNC_LOCK)

     44:    Level: advanced

     46: .seealso: PetscSFWindowSetSyncType(), PetscSFWindowGetSyncType()
     47: E*/
     48: typedef enum {PETSCSF_WINDOW_SYNC_FENCE,PETSCSF_WINDOW_SYNC_LOCK,PETSCSF_WINDOW_SYNC_ACTIVE} PetscSFWindowSyncType;
     49: PETSC_EXTERN const char *const PetscSFWindowSyncTypes[];

     51: /*E
     52:     PetscSFWindowFlavorType - Flavor for the creation of MPI windows for PETSCSFWINDOW

     54: $  PETSCSF_WINDOW_FLAVOR_CREATE - Use MPI_Win_create, no reusage
     55: $  PETSCSF_WINDOW_FLAVOR_DYNAMIC - Use MPI_Win_create_dynamic and dynamically attach pointers
     56: $  PETSCSF_WINDOW_FLAVOR_ALLOCATE - Use MPI_Win_allocate
     57: $  PETSCSF_WINDOW_FLAVOR_SHARED - Use MPI_Win_allocate_shared

     59:    Level: advanced

     61: .seealso: PetscSFWindowSetFlavorType(), PetscSFWindowGetFlavorType()
     62: E*/
     63: typedef enum {PETSCSF_WINDOW_FLAVOR_CREATE,PETSCSF_WINDOW_FLAVOR_DYNAMIC,PETSCSF_WINDOW_FLAVOR_ALLOCATE,PETSCSF_WINDOW_FLAVOR_SHARED} PetscSFWindowFlavorType;
     64: PETSC_EXTERN const char *const PetscSFWindowFlavorTypes[];

     66: /*E
     67:     PetscSFDuplicateOption - Aspects to preserve when duplicating a PetscSF

     69: $  PETSCSF_DUPLICATE_CONFONLY - configuration only, user must call PetscSFSetGraph()
     70: $  PETSCSF_DUPLICATE_RANKS - communication ranks preserved, but different graph (allows simpler setup after calling PetscSFSetGraph())
     71: $  PETSCSF_DUPLICATE_GRAPH - entire graph duplicated

     73:    Level: beginner

     75: .seealso: PetscSFDuplicate()
     76: E*/
     77: typedef enum {PETSCSF_DUPLICATE_CONFONLY,PETSCSF_DUPLICATE_RANKS,PETSCSF_DUPLICATE_GRAPH} PetscSFDuplicateOption;
     78: PETSC_EXTERN const char *const PetscSFDuplicateOptions[];

     80: PETSC_EXTERN PetscFunctionList PetscSFList;
     81: PETSC_EXTERN PetscErrorCode PetscSFRegister(const char[],PetscErrorCode (*)(PetscSF));

     83: PETSC_EXTERN PetscErrorCode PetscSFInitializePackage(void);
     84: PETSC_EXTERN PetscErrorCode PetscSFFinalizePackage(void);
     85: PETSC_EXTERN PetscErrorCode PetscSFCreate(MPI_Comm,PetscSF*);
     86: PETSC_EXTERN PetscErrorCode PetscSFDestroy(PetscSF*);
     87: PETSC_EXTERN PetscErrorCode PetscSFSetType(PetscSF,PetscSFType);
     88: PETSC_EXTERN PetscErrorCode PetscSFGetType(PetscSF,PetscSFType*);
     89: PETSC_EXTERN PetscErrorCode PetscSFView(PetscSF,PetscViewer);
     90: PETSC_EXTERN PetscErrorCode PetscSFViewFromOptions(PetscSF,PetscObject,const char[]);
     91: PETSC_EXTERN PetscErrorCode PetscSFSetUp(PetscSF);
     92: PETSC_EXTERN PetscErrorCode PetscSFSetFromOptions(PetscSF);
     93: PETSC_EXTERN PetscErrorCode PetscSFDuplicate(PetscSF,PetscSFDuplicateOption,PetscSF*);
     94: PETSC_EXTERN PetscErrorCode PetscSFWindowSetSyncType(PetscSF,PetscSFWindowSyncType);
     95: PETSC_EXTERN PetscErrorCode PetscSFWindowGetSyncType(PetscSF,PetscSFWindowSyncType*);
     96: PETSC_EXTERN PetscErrorCode PetscSFWindowSetFlavorType(PetscSF,PetscSFWindowFlavorType);
     97: PETSC_EXTERN PetscErrorCode PetscSFWindowGetFlavorType(PetscSF,PetscSFWindowFlavorType*);
     98: PETSC_EXTERN PetscErrorCode PetscSFWindowSetInfo(PetscSF,MPI_Info);
     99: PETSC_EXTERN PetscErrorCode PetscSFWindowGetInfo(PetscSF,MPI_Info*);
    100: PETSC_EXTERN PetscErrorCode PetscSFSetRankOrder(PetscSF,PetscBool);
    101: PETSC_EXTERN PetscErrorCode PetscSFSetGraph(PetscSF,PetscInt,PetscInt,const PetscInt*,PetscCopyMode,const PetscSFNode*,PetscCopyMode);
    102: PETSC_EXTERN PetscErrorCode PetscSFSetGraphWithPattern(PetscSF,PetscLayout,PetscSFPattern);
    103: PETSC_EXTERN PetscErrorCode PetscSFGetGraph(PetscSF,PetscInt*,PetscInt*,const PetscInt**,const PetscSFNode**);
    104: PETSC_EXTERN PetscErrorCode PetscSFGetLeafRange(PetscSF,PetscInt*,PetscInt*);
    105: PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedRootSF(PetscSF,PetscInt,const PetscInt*,PetscSF*);
    106: PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF,PetscInt,const PetscInt*,PetscSF*);
    107: PETSC_EXTERN PetscErrorCode PetscSFReset(PetscSF);
    108: PETSC_EXTERN PetscErrorCode PetscSFSetUpRanks(PetscSF,MPI_Group);
    109: PETSC_EXTERN PetscErrorCode PetscSFGetRootRanks(PetscSF,PetscInt*,const PetscMPIInt**,const PetscInt**,const PetscInt**,const PetscInt**);
    110: PETSC_EXTERN PetscErrorCode PetscSFGetLeafRanks(PetscSF,PetscInt*,const PetscMPIInt**,const PetscInt**,const PetscInt**);
    111: PETSC_EXTERN PetscErrorCode PetscSFGetGroups(PetscSF,MPI_Group*,MPI_Group*);
    112: PETSC_EXTERN PetscErrorCode PetscSFGetMultiSF(PetscSF,PetscSF*);
    113: PETSC_EXTERN PetscErrorCode PetscSFCreateInverseSF(PetscSF,PetscSF*);

    115: /* Build PetscSF from PetscLayout */
    116: PETSC_EXTERN PetscErrorCode PetscSFSetGraphLayout(PetscSF,PetscLayout,PetscInt,const PetscInt*,PetscCopyMode,const PetscInt*);
    117: PETSC_EXTERN PetscErrorCode PetscSFCreateFromLayouts(PetscLayout,PetscLayout,PetscSF*);
    118: PETSC_DEPRECATED_FUNCTION("Use PetscSFCreateFromLayouts (since v3.15)")
    119: PETSC_STATIC_INLINE PetscErrorCode PetscLayoutsCreateSF(PetscLayout rmap, PetscLayout lmap, PetscSF* sf) { return PetscSFCreateFromLayouts(rmap, lmap, sf); }
    120: PETSC_EXTERN PetscErrorCode PetscSFCreateByMatchingIndices(PetscLayout,PetscInt,const PetscInt*,const PetscInt*,PetscInt,PetscInt,const PetscInt*,const PetscInt*,PetscInt,PetscSF*,PetscSF*);

    122: /* PetscSection interoperability */
    123: PETSC_EXTERN PetscErrorCode PetscSFSetGraphSection(PetscSF,PetscSection,PetscSection);
    124: PETSC_EXTERN PetscErrorCode PetscSFCreateRemoteOffsets(PetscSF, PetscSection, PetscSection, PetscInt **);
    125: PETSC_EXTERN PetscErrorCode PetscSFDistributeSection(PetscSF, PetscSection, PetscInt **, PetscSection);
    126: PETSC_EXTERN PetscErrorCode PetscSFCreateSectionSF(PetscSF, PetscSection, PetscInt [], PetscSection, PetscSF *);

    128: /* Reduce rootdata to leafdata using provided operation */
    129: PETSC_EXTERN PetscErrorCode PetscSFBcastBegin(PetscSF,MPI_Datatype,const void*,void*,MPI_Op)
    130:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
    131: PETSC_EXTERN PetscErrorCode PetscSFBcastEnd(PetscSF,MPI_Datatype,const void*,void*,MPI_Op)
    132:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
    133: PETSC_EXTERN PetscErrorCode PetscSFBcastWithMemTypeBegin(PetscSF,MPI_Datatype,PetscMemType,const void*,PetscMemType,void*,MPI_Op)
    134:   PetscAttrMPIPointerWithType(4,2) PetscAttrMPIPointerWithType(6,2);

    136: /* Reduce leafdata into rootdata using provided operation */
    137: PETSC_EXTERN PetscErrorCode PetscSFReduceBegin(PetscSF,MPI_Datatype,const void*,void *,MPI_Op)
    138:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
    139: PETSC_EXTERN PetscErrorCode PetscSFReduceEnd(PetscSF,MPI_Datatype,const void*,void*,MPI_Op)
    140:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
    141: PETSC_EXTERN PetscErrorCode PetscSFReduceWithMemTypeBegin(PetscSF,MPI_Datatype,PetscMemType,const void*,PetscMemType,void *,MPI_Op)
    142:   PetscAttrMPIPointerWithType(4,2) PetscAttrMPIPointerWithType(6,2);
    143: /* Atomically modifies (using provided operation) rootdata using leafdata from each leaf, value at root at time of modification is returned in leafupdate. */
    144: PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpBegin(PetscSF,MPI_Datatype,void*,const void*,void*,MPI_Op)
    145:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2) PetscAttrMPIPointerWithType(5,2);
    146: PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpEnd(PetscSF,MPI_Datatype,void*,const void*,void*,MPI_Op)
    147:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2) PetscAttrMPIPointerWithType(5,2);
    148: /* Compute the degree of every root vertex (number of leaves in its star) */
    149: PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeBegin(PetscSF,const PetscInt**);
    150: PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeEnd(PetscSF,const PetscInt**);
    151: PETSC_EXTERN PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF,const PetscInt[],PetscInt*,PetscInt*[]);
    152: /* Concatenate data from all leaves into roots */
    153: PETSC_EXTERN PetscErrorCode PetscSFGatherBegin(PetscSF,MPI_Datatype,const void*,void*)
    154:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
    155: PETSC_EXTERN PetscErrorCode PetscSFGatherEnd(PetscSF,MPI_Datatype,const void*,void*)
    156:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
    157: /* Distribute distinct values to each leaf from roots */
    158: PETSC_EXTERN PetscErrorCode PetscSFScatterBegin(PetscSF,MPI_Datatype,const void*,void*)
    159:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
    160: PETSC_EXTERN PetscErrorCode PetscSFScatterEnd(PetscSF,MPI_Datatype,const void*,void*)
    161:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);

    163: PETSC_EXTERN PetscErrorCode PetscSFCompose(PetscSF,PetscSF,PetscSF*);
    164: PETSC_EXTERN PetscErrorCode PetscSFComposeInverse(PetscSF,PetscSF,PetscSF*);

    166: #define MPIU_REPLACE MPI_REPLACE PETSC_DEPRECATED_MACRO("GCC warning \"MPIU_REPLACE macro is deprecated use MPI_REPLACE (since version 3.15)\"")

    168: PETSC_DEPRECATED_FUNCTION("Use PetscSFGetRootRanks (since v3.12)")
    169: PETSC_STATIC_INLINE PetscErrorCode PetscSFGetRanks(PetscSF sf,PetscInt *nranks,const PetscMPIInt **ranks,const PetscInt **roffset,const PetscInt **rmine,const PetscInt **rremote)
    170: { return PetscSFGetRootRanks(sf,nranks,ranks,roffset,rmine,rremote); }

    172: PETSC_DEPRECATED_FUNCTION("Use PetscSFCreateEmbeddedRootSF (since v3.15)")
    173: PETSC_STATIC_INLINE PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF sf,PetscInt nselected,const PetscInt *selected,PetscSF *esf)
    174: { return PetscSFCreateEmbeddedRootSF(sf,nselected,selected,esf); }

    176: PETSC_DEPRECATED_FUNCTION("Use PetscSFBcastBegin (since v3.15)")
    177: PETSC_STATIC_INLINE PetscErrorCode PetscSFBcastAndOpBegin(PetscSF sf,MPI_Datatype unit,const void* rootdata,void* leafdata,MPI_Op op)
    178: { return PetscSFBcastBegin(sf,unit,rootdata,leafdata,op); }

    180: PETSC_DEPRECATED_FUNCTION("Use PetscSFBcastEnd (since v3.15)")
    181: PETSC_STATIC_INLINE PetscErrorCode PetscSFBcastAndOpEnd(PetscSF sf,MPI_Datatype unit,const void* rootdata,void* leafdata,MPI_Op op)
    182: { return PetscSFBcastEnd(sf,unit,rootdata,leafdata,op); }

    184: PETSC_DEPRECATED_FUNCTION("Use PetscSFBcastWithMemTypeBegin (since v3.15)")
    185: PETSC_STATIC_INLINE PetscErrorCode PetscSFBcastAndOpWithMemtypeBegin(PetscSF sf,MPI_Datatype unit,PetscMemType rootmtype,const void *rootdata,PetscMemType leafmtype,void *leafdata,MPI_Op op)
    186: { return PetscSFBcastWithMemTypeBegin(sf,unit,rootmtype,rootdata,leafmtype,leafdata,op); }

    188: #endif