/*=========================================================================

  Program:   DICOMParser
  Module:    DICOMAppHelper.cxx
  Language:  C++

  Copyright (c) 2003 Matt Turek
  All rights reserved.
  See Copyright.txt for details.

     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notice for more information.

=========================================================================*/

#ifdef _MSC_VER
#pragma warning(disable : 4514)
#pragma warning(disable : 4786)
#pragma warning(disable : 4503)
#pragma warning(disable : 4710)
#pragma warning(disable : 4702)
#pragma warning(push, 3)
#endif

#include "DICOMAppHelper.h"
#include "DICOMCallback.h"
#include "DICOMConfig.h"

#include <algorithm>
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <string>
#if defined(__BORLANDC__) && (__BORLANDC__ < 0x660)
#include <mem.h> // for memcpy
#endif

//#define DEBUG_DICOM_APP_HELPER

class DICOMAppHelperImplementation
{
public:
  // map from series UID to vector of files in the series
  dicom_stl::map<dicom_stl::string, dicom_stl::vector<dicom_stl::string>, ltstdstr> SeriesUIDMap;

  // map from filename to intraseries sortable tags
  dicom_stl::map<dicom_stl::string, DICOMOrderingElements, ltstdstr> SliceOrderingMap;

  typedef dicom_stl::map<dicom_stl::pair<doublebyte, doublebyte>, DICOMTagInfo> TagMapType;
  TagMapType TagMap;
};

struct lt_pair_int_string
{
  bool operator()(const dicom_stl::pair<int, dicom_stl::string>& s1,
    const dicom_stl::pair<int, dicom_stl::string>& s2) const
  {
    return s1.first < s2.first;
  }
};

struct lt_pair_float_string
{
  bool operator()(const dicom_stl::pair<float, dicom_stl::string>& s1,
    const dicom_stl::pair<float, dicom_stl::string>& s2) const
  {
    return s1.first < s2.first;
  }
};

struct gt_pair_int_string
{
  bool operator()(const dicom_stl::pair<int, dicom_stl::string>& s1,
    const dicom_stl::pair<int, dicom_stl::string>& s2) const
  {
    return s1.first > s2.first;
  }
};

struct gt_pair_float_string
{
  bool operator()(const dicom_stl::pair<float, dicom_stl::string>& s1,
    const dicom_stl::pair<float, dicom_stl::string>& s2) const
  {
    return s1.first > s2.first;
  }
};

DICOMAppHelper::DICOMAppHelper()
{
  this->HeaderFile = new dicom_stream::ofstream();

  this->BitsAllocated = 8;
  this->ByteSwapData = false;
  this->PixelSpacing[0] = this->PixelSpacing[1] = this->PixelSpacing[2] = 1.0;
  this->Dimensions[0] = this->Dimensions[1] = 0;
  this->PhotometricInterpretation = new dicom_stl::string();
  this->TransferSyntaxUID = new dicom_stl::string();
  this->RescaleOffset = 0.0;
  this->RescaleSlope = 1.0;
  this->ImageData = nullptr;
  this->ImageDataLengthInBytes = 0;
  this->PatientName = new dicom_stl::string();
  this->StudyUID = new dicom_stl::string();
  this->StudyID = new dicom_stl::string();
  this->GantryAngle = 0.0;
  this->Width = 0;
  this->Height = 0;
  this->PixelRepresentation = 0;

  this->SeriesUIDCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->SliceNumberCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->SliceLocationCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->ImagePositionPatientCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->ImageOrientationPatientCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->TransferSyntaxCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->ToggleSwapBytesCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->BitsAllocatedCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->PixelSpacingCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->HeightCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->WidthCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->PixelRepresentationCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->PhotometricInterpretationCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->RescaleOffsetCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->RescaleSlopeCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->PixelDataCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->PatientNameCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->StudyUIDCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->StudyIDCB = new DICOMMemberCallback<DICOMAppHelper>;
  this->GantryAngleCB = new DICOMMemberCallback<DICOMAppHelper>;

  this->Implementation = new DICOMAppHelperImplementation;
}

DICOMAppHelper::~DICOMAppHelper()
{
  this->Clear();

  this->HeaderFile->close();
  delete this->HeaderFile;

  //
  // Fix warning here.
  //
  delete[](static_cast<char*>(this->ImageData));

  delete this->TransferSyntaxUID;
  delete this->PhotometricInterpretation;
  delete this->PatientName;
  delete this->StudyUID;
  delete this->StudyID;
  delete this->SeriesUIDCB;
  delete this->SliceNumberCB;
  delete this->SliceLocationCB;
  delete this->ImagePositionPatientCB;
  delete this->ImageOrientationPatientCB;
  delete this->TransferSyntaxCB;
  delete this->ToggleSwapBytesCB;
  delete this->BitsAllocatedCB;
  delete this->PixelSpacingCB;
  delete this->HeightCB;
  delete this->WidthCB;
  delete this->PixelRepresentationCB;
  delete this->PhotometricInterpretationCB;
  delete this->RescaleOffsetCB;
  delete this->RescaleSlopeCB;
  delete this->PixelDataCB;
  delete this->PatientNameCB;
  delete this->StudyUIDCB;
  delete this->StudyIDCB;
  delete this->GantryAngleCB;

  delete this->Implementation;
}

void DICOMAppHelper::RegisterCallbacks(DICOMParser* parser)
{
  if (!parser)
  {
    dicom_stream::cerr << "Null parser!" << dicom_stream::endl;
    return;
  }

  SeriesUIDCB->SetCallbackFunction(this, &DICOMAppHelper::SeriesUIDCallback);
  parser->AddDICOMTagCallback(0x0020, 0x000e, DICOMParser::VR_UI, SeriesUIDCB);

  SliceNumberCB->SetCallbackFunction(this, &DICOMAppHelper::SliceNumberCallback);
  parser->AddDICOMTagCallback(0x0020, 0x0013, DICOMParser::VR_IS, SliceNumberCB);

  SliceLocationCB->SetCallbackFunction(this, &DICOMAppHelper::SliceLocationCallback);
  parser->AddDICOMTagCallback(0x0020, 0x1041, DICOMParser::VR_CS, SliceLocationCB);

  ImagePositionPatientCB->SetCallbackFunction(this, &DICOMAppHelper::ImagePositionPatientCallback);
  parser->AddDICOMTagCallback(0x0020, 0x0032, DICOMParser::VR_SH, ImagePositionPatientCB);

  ImageOrientationPatientCB->SetCallbackFunction(
    this, &DICOMAppHelper::ImageOrientationPatientCallback);
  parser->AddDICOMTagCallback(0x0020, 0x0037, DICOMParser::VR_SH, ImageOrientationPatientCB);

  TransferSyntaxCB->SetCallbackFunction(this, &DICOMAppHelper::TransferSyntaxCallback);
  parser->AddDICOMTagCallback(0x0002, 0x0010, DICOMParser::VR_UI, TransferSyntaxCB);

  ToggleSwapBytesCB->SetCallbackFunction(this, &DICOMAppHelper::ToggleSwapBytesCallback);

  BitsAllocatedCB->SetCallbackFunction(this, &DICOMAppHelper::BitsAllocatedCallback);
  parser->AddDICOMTagCallback(0x0028, 0x0100, DICOMParser::VR_US, BitsAllocatedCB);

  PixelSpacingCB->SetCallbackFunction(this, &DICOMAppHelper::PixelSpacingCallback);
  // Why is 0028,0030 VR:FL, it is VR::DS as per PS 3.6-2008 ...
  parser->AddDICOMTagCallback(0x0028, 0x0030, DICOMParser::VR_FL, PixelSpacingCB);
  parser->AddDICOMTagCallback(0x0018, 0x0050, DICOMParser::VR_FL, PixelSpacingCB);

  WidthCB->SetCallbackFunction(this, &DICOMAppHelper::WidthCallback);
  parser->AddDICOMTagCallback(0x0028, 0x0011, DICOMParser::VR_US, WidthCB);

  HeightCB->SetCallbackFunction(this, &DICOMAppHelper::HeightCallback);
  parser->AddDICOMTagCallback(0x0028, 0x0010, DICOMParser::VR_US, HeightCB);

  PixelRepresentationCB->SetCallbackFunction(this, &DICOMAppHelper::PixelRepresentationCallback);
  parser->AddDICOMTagCallback(0x0028, 0x0103, DICOMParser::VR_US, PixelRepresentationCB);

  PhotometricInterpretationCB->SetCallbackFunction(
    this, &DICOMAppHelper::PhotometricInterpretationCallback);
  parser->AddDICOMTagCallback(0x0028, 0x0004, DICOMParser::VR_CS, PhotometricInterpretationCB);

  RescaleOffsetCB->SetCallbackFunction(this, &DICOMAppHelper::RescaleOffsetCallback);
  parser->AddDICOMTagCallback(0x0028, 0x1052, DICOMParser::VR_CS, RescaleOffsetCB);

  RescaleSlopeCB->SetCallbackFunction(this, &DICOMAppHelper::RescaleSlopeCallback);
  parser->AddDICOMTagCallback(0x0028, 0x1053, DICOMParser::VR_FL, RescaleSlopeCB);

  PatientNameCB->SetCallbackFunction(this, &DICOMAppHelper::PatientNameCallback);
  parser->AddDICOMTagCallback(0x0010, 0x0010, DICOMParser::VR_PN, PatientNameCB);

  StudyUIDCB->SetCallbackFunction(this, &DICOMAppHelper::StudyUIDCallback);
  parser->AddDICOMTagCallback(0x0020, 0x000d, DICOMParser::VR_UI, StudyUIDCB);

  StudyIDCB->SetCallbackFunction(this, &DICOMAppHelper::StudyIDCallback);
  parser->AddDICOMTagCallback(0x0020, 0x0010, DICOMParser::VR_SH, StudyIDCB);

  GantryAngleCB->SetCallbackFunction(this, &DICOMAppHelper::GantryAngleCallback);
  parser->AddDICOMTagCallback(0x0018, 0x1120, DICOMParser::VR_FL, GantryAngleCB);

  DICOMTagInfo dicom_tags[] = { { 0x0002, 0x0002, DICOMParser::VR_UI,
                                  "Media storage SOP class uid" },
    { 0x0002, 0x0003, DICOMParser::VR_UI, "Media storage SOP inst uid" },
    { 0x0002, 0x0010, DICOMParser::VR_UI, "Transfer syntax uid" },
    { 0x0002, 0x0012, DICOMParser::VR_UI, "Implementation class uid" },
    { 0x0008, 0x0018, DICOMParser::VR_UI, "Image UID" },
    { 0x0008, 0x0020, DICOMParser::VR_DA, "Series date" },
    { 0x0008, 0x0030, DICOMParser::VR_TM, "Series time" },
    { 0x0008, 0x0060, DICOMParser::VR_SH, "Modality" },
    { 0x0008, 0x0070, DICOMParser::VR_SH, "Manufacturer" },
    { 0x0008, 0x1060, DICOMParser::VR_SH, "Physician" },
    { 0x0018, 0x0050, DICOMParser::VR_FL, "slice thickness" },
    { 0x0018, 0x0060, DICOMParser::VR_FL, "kV" },
    { 0x0018, 0x0088, DICOMParser::VR_FL, "slice spacing" },
    { 0x0018, 0x1100, DICOMParser::VR_SH, "Recon diameter" },
    { 0x0018, 0x1151, DICOMParser::VR_FL, "mA" },
    { 0x0018, 0x1210, DICOMParser::VR_SH, "Recon kernel" },
    { 0x0020, 0x000d, DICOMParser::VR_UI, "Study UID" },
    { 0x0020, 0x000e, DICOMParser::VR_UI, "Series UID" },
    { 0x0020, 0x0013, DICOMParser::VR_IS, "Image number" },
    { 0x0020, 0x0032, DICOMParser::VR_SH, "Patient position" },
    { 0x0020, 0x0037, DICOMParser::VR_SH, "Patient position cosines" },
    { 0x0020, 0x1041, DICOMParser::VR_CS, "Slice location" },
    { 0x0028, 0x0010, DICOMParser::VR_FL, "Num rows" },
    { 0x0028, 0x0011, DICOMParser::VR_FL, "Num cols" },
    { 0x0028, 0x0030, DICOMParser::VR_FL, "pixel spacing" },
    { 0x0028, 0x0100, DICOMParser::VR_US, "Bits allocated" },
    { 0x0028, 0x0120, DICOMParser::VR_UL, "pixel padding" },
    { 0x0028, 0x1052, DICOMParser::VR_FL, "pixel offset" } };

  int num_tags = sizeof(dicom_tags) / sizeof(DICOMTagInfo);

#ifdef DEBUG_DICOM_APP_HELPER
  DICOMMemberCallback<DICOMAppHelper>** callbackArray =
    new DICOMMemberCallback<DICOMAppHelper>*[num_tags];
#endif

  for (int j = 0; j < num_tags; j++)
  {
    //
    // Setup internal map.
    //
    DICOMTagInfo tagStruct = dicom_tags[j];
    doublebyte group = tagStruct.group;
    doublebyte element = tagStruct.element;

    dicom_stl::pair<doublebyte, doublebyte> gePair(group, element);
    dicom_stl::pair<const dicom_stl::pair<doublebyte, doublebyte>, DICOMTagInfo> mapPair(
      gePair, tagStruct);
    this->Implementation->TagMap.insert(mapPair);

#ifdef DEBUG_DICOM_APP_HELPER
    //
    // Make callback
    //
    callbackArray[j] = new DICOMMemberCallback<DICOMAppHelper>;
    callbackArray[j]->SetCallbackFunction(this, &DICOMAppHelper::ArrayCallback);
    //
    // Set callback on parser.
    //
    parser->AddDICOMTagCallback(group, element, datatype, callbackArray[j]);
#endif
  }
}

void DICOMAppHelper::SeriesUIDCallback(
  DICOMParser* parser, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char* val, quadbyte)
{
  char* newString = reinterpret_cast<char*>(val);
  dicom_stl::string newStdString(newString);
  dicom_stl::map<dicom_stl::string, dicom_stl::vector<dicom_stl::string>, ltstdstr>::iterator iter =
    this->Implementation->SeriesUIDMap.find(newStdString);
  if (iter == this->Implementation->SeriesUIDMap.end())
  {
    dicom_stl::vector<dicom_stl::string> newVector;

    newVector.push_back(parser->GetFileName());
    this->Implementation->SeriesUIDMap.insert(
      dicom_stl::pair<const dicom_stl::string, dicom_stl::vector<dicom_stl::string>>(
        newStdString, newVector));
  }
  else
  {
    (*iter).second.push_back(parser->GetFileName());
  }
}

void DICOMAppHelper::OutputSeries()
{
  dicom_stream::cout << dicom_stream::endl << dicom_stream::endl;

  for (dicom_stl::map<dicom_stl::string, dicom_stl::vector<dicom_stl::string>, ltstdstr>::iterator
         iter = this->Implementation->SeriesUIDMap.begin();
       iter != this->Implementation->SeriesUIDMap.end(); ++iter)
  {
    dicom_stream::cout << "SERIES: " << (*iter).first.c_str() << dicom_stream::endl;
    dicom_stl::vector<dicom_stl::string>& v_ref = (*iter).second;

    for (dicom_stl::vector<dicom_stl::string>::iterator v_iter = v_ref.begin();
         v_iter != v_ref.end(); ++v_iter)
    {
      dicom_stl::map<dicom_stl::string, DICOMOrderingElements, ltstdstr>::iterator sn_iter =
        Implementation->SliceOrderingMap.find(*v_iter);

      int slice = -1;
      if (sn_iter != Implementation->SliceOrderingMap.end())
      {
        slice = (*sn_iter).second.SliceNumber;
      }
      dicom_stream::cout << "\t" << (*v_iter).c_str() << " [" << slice << "]" << dicom_stream::endl;
    }
  }
}

void DICOMAppHelper::ArrayCallback(DICOMParser* parser, doublebyte group, doublebyte element,
  DICOMParser::VRTypes datatype, unsigned char* val, quadbyte len)
{
  const char* desc = "No description";

  TagMapType::iterator iter =
    this->Implementation->TagMap.find(dicom_stl::pair<doublebyte, doublebyte>(group, element));
  if (iter != this->Implementation->TagMap.end())
  {
    desc = (*iter).second.description;
  }

  int t2 = int((0x0000FF00 & datatype) >> 8);
  int t1 = int((0x000000FF & datatype));

  char ct2 = static_cast<char>(t2);
  char ct1 = static_cast<char>(t1);

  *this->HeaderFile << "(0x";

  this->HeaderFile->width(4);
  char prev = this->HeaderFile->fill('0');

  *this->HeaderFile << dicom_stream::hex << group;
  *this->HeaderFile << ",0x";

  this->HeaderFile->width(4);
  this->HeaderFile->fill('0');

  *this->HeaderFile << dicom_stream::hex << element;
  *this->HeaderFile << ") ";

  this->HeaderFile->fill(prev);
  *this->HeaderFile << dicom_stream::dec;
  *this->HeaderFile << " " << ct1 << ct2 << " ";
  *this->HeaderFile << "[" << len << " bytes] ";

  *this->HeaderFile << desc << " : ";

  unsigned int uival = 0;
  float fval = 0;
  double dval = 0;
  int ival = 0;

  if (val)
  {
    switch (datatype)
    {
      case DICOMParser::VR_AE:
      case DICOMParser::VR_AS:
      case DICOMParser::VR_CS:
      case DICOMParser::VR_UI:
      case DICOMParser::VR_DA:
      case DICOMParser::VR_DS:
      case DICOMParser::VR_DT:
      case DICOMParser::VR_LO:
      case DICOMParser::VR_LT:
      case DICOMParser::VR_OB: // ordered bytes
      case DICOMParser::VR_OW: // ordered words
      case DICOMParser::VR_PN:
      case DICOMParser::VR_ST:
      case DICOMParser::VR_TM:
      case DICOMParser::VR_UN:
      case DICOMParser::VR_UT:
      case DICOMParser::VR_SQ: // sequence
      case DICOMParser::VR_SH: // strings
      case DICOMParser::VR_IS:
        *this->HeaderFile << val;
        break;
      case DICOMParser::VR_FL: // float
        fval = static_cast<float>(atof(reinterpret_cast<char*>(val)));
        *this->HeaderFile << fval;
        break;
      case DICOMParser::VR_FD: // float double
        dval = static_cast<double>(atof(reinterpret_cast<char*>(val)));
        *this->HeaderFile << dval;
        break;
      case DICOMParser::VR_UL: // unsigned long
      case DICOMParser::VR_SL: // signed long
      case DICOMParser::VR_AT:
        *this->HeaderFile << uival;
        break;
      // case DICOMParser::VR_IS:
      //  ival = DICOMFile::ReturnAsSignedLong(val,
      //  parser->GetDICOMFile()->GetPlatformIsBigEndian()); this->HeaderFile << ival; break;
      case DICOMParser::VR_SS:
        ival =
          DICOMFile::ReturnAsSignedShort(val, parser->GetDICOMFile()->GetPlatformIsBigEndian());
        *this->HeaderFile << ival;
        break;
      case DICOMParser::VR_US: // unsigned short
        uival =
          DICOMFile::ReturnAsUnsignedShort(val, parser->GetDICOMFile()->GetPlatformIsBigEndian());
        *this->HeaderFile << uival;
        break;
      case DICOMParser::VR_UNKNOWN:
      case DICOMParser::VR_AW:
      default:
        *this->HeaderFile << val << dicom_stream::endl;
        break;
    }
  }
  else
  {
    *this->HeaderFile << "NULL";
  }

  *this->HeaderFile << dicom_stream::dec << dicom_stream::endl;
  this->HeaderFile->fill(prev);

  delete[] val;
}

void DICOMAppHelper::SliceNumberCallback(
  DICOMParser* parser, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char* val, quadbyte)
{
  // Look for the current file in the map of slice ordering data
  dicom_stl::map<dicom_stl::string, DICOMOrderingElements, ltstdstr>::iterator it;
  it = this->Implementation->SliceOrderingMap.find(parser->GetFileName());
  if (it == Implementation->SliceOrderingMap.end())
  {
    // file not found, create a new entry
    DICOMOrderingElements ord;
    if (val)
    {
      ord.SliceNumber = atoi(reinterpret_cast<char*>(val));
    }
    else // Slice Number present but empty
    {
      ord.SliceNumber = 0;
    }

    // insert into the map
    this->Implementation->SliceOrderingMap.insert(
      dicom_stl::pair<const dicom_stl::string, DICOMOrderingElements>(parser->GetFileName(), ord));
  }
  else
  {
    // file found, add new values
    if (val)
    {
      (*it).second.SliceNumber = atoi(reinterpret_cast<char*>(val));
    }
    else // Slice Number present but empty
    {
      (*it).second.SliceNumber = 0;
    }
  }

  // cache the slice number
  if (val)
  {
    this->SliceNumber = atoi(reinterpret_cast<char*>(val));
  }
  else // Slice Number present but empty
  {
    this->SliceNumber = 0;
  }
}

void DICOMAppHelper::SliceLocationCallback(
  DICOMParser* parser, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char* val, quadbyte)
{
  // Look for the current file in the map of slice ordering data
  dicom_stl::map<dicom_stl::string, DICOMOrderingElements, ltstdstr>::iterator it;
  it = this->Implementation->SliceOrderingMap.find(parser->GetFileName());
  if (it == Implementation->SliceOrderingMap.end())
  {
    // file not found, create a new entry
    DICOMOrderingElements ord;
    ord.SliceLocation = static_cast<float>(atof(reinterpret_cast<char*>(val)));

    // insert into the map
    this->Implementation->SliceOrderingMap.insert(
      dicom_stl::pair<const dicom_stl::string, DICOMOrderingElements>(parser->GetFileName(), ord));
  }
  else if (val)
  {
    // file found, add new values
    (*it).second.SliceLocation = static_cast<float>(atof(reinterpret_cast<char*>(val)));
  }
}

void DICOMAppHelper::ImagePositionPatientCallback(
  DICOMParser* parser, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char* val, quadbyte)
{
  // Look for the current file in the map of slice ordering data
  dicom_stl::map<dicom_stl::string, DICOMOrderingElements, ltstdstr>::iterator it;
  it = this->Implementation->SliceOrderingMap.find(parser->GetFileName());
  if (it == Implementation->SliceOrderingMap.end())
  {
    // file not found, create a new entry
    DICOMOrderingElements ord;

    if (val)
    {
      sscanf(reinterpret_cast<char*>(val), "%f\\%f\\%f", &ord.ImagePositionPatient[0],
        &ord.ImagePositionPatient[1], &ord.ImagePositionPatient[2]);
    }
    else
    {
      // no actual position specified, default to the origin
      ord.ImagePositionPatient[0] = 0.0;
      ord.ImagePositionPatient[1] = 0.0;
      ord.ImagePositionPatient[2] = 0.0;
    }

    // insert into the map
    this->Implementation->SliceOrderingMap.insert(
      dicom_stl::pair<const dicom_stl::string, DICOMOrderingElements>(parser->GetFileName(), ord));

    // cache the value
    memcpy(this->ImagePositionPatient, ord.ImagePositionPatient, 3 * sizeof(float));
  }
  else
  {
    if (val)
    {
      // file found, add new values
      sscanf(reinterpret_cast<char*>(val), "%f\\%f\\%f", &(*it).second.ImagePositionPatient[0],
        &(*it).second.ImagePositionPatient[1], &(*it).second.ImagePositionPatient[2]);
    }
    else
    {
      // no actual position specified, default to the origin
      (*it).second.ImagePositionPatient[0] = 0.0;
      (*it).second.ImagePositionPatient[1] = 0.0;
      (*it).second.ImagePositionPatient[2] = 0.0;
    }

    // cache the value
    memcpy(this->ImagePositionPatient, (*it).second.ImagePositionPatient, 3 * sizeof(float));
  }
}

void DICOMAppHelper::ImageOrientationPatientCallback(
  DICOMParser* parser, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char* val, quadbyte)
{
  // Look for the current file in the map of slice ordering data
  dicom_stl::map<dicom_stl::string, DICOMOrderingElements, ltstdstr>::iterator it;
  it = this->Implementation->SliceOrderingMap.find(parser->GetFileName());
  if (it == Implementation->SliceOrderingMap.end())
  {
    // file not found, create a new entry
    DICOMOrderingElements ord;
    if (val)
    {
      sscanf(reinterpret_cast<char*>(val), "%f\\%f\\%f\\%f\\%f\\%f",
        &ord.ImageOrientationPatient[0], &ord.ImageOrientationPatient[1],
        &ord.ImageOrientationPatient[2], &ord.ImageOrientationPatient[3],
        &ord.ImageOrientationPatient[4], &ord.ImageOrientationPatient[5]);
    }
    else
    {
      // no orientation defined, default to an standard axial orientation
      ord.ImageOrientationPatient[0] = 1.0;
      ord.ImageOrientationPatient[1] = 0.0;
      ord.ImageOrientationPatient[2] = 0.0;
      ord.ImageOrientationPatient[3] = 0.0;
      ord.ImageOrientationPatient[4] = 1.0;
      ord.ImageOrientationPatient[5] = 0.0;
    }

    // insert into the map
    this->Implementation->SliceOrderingMap.insert(
      dicom_stl::pair<const dicom_stl::string, DICOMOrderingElements>(parser->GetFileName(), ord));

    // cache the value
    memcpy(this->ImageOrientationPatient, ord.ImageOrientationPatient, 6 * sizeof(float));
  }
  else
  {
    // file found, add new values
    if (val)
    {
      sscanf(reinterpret_cast<char*>(val), "%f\\%f\\%f\\%f\\%f\\%f",
        &(*it).second.ImageOrientationPatient[0], &(*it).second.ImageOrientationPatient[1],
        &(*it).second.ImageOrientationPatient[2], &(*it).second.ImageOrientationPatient[3],
        &(*it).second.ImageOrientationPatient[4], &(*it).second.ImageOrientationPatient[5]);
    }
    else
    {
      // no orientation defined, default to an standard axial orientation
      (*it).second.ImageOrientationPatient[0] = 1.0;
      (*it).second.ImageOrientationPatient[1] = 0.0;
      (*it).second.ImageOrientationPatient[2] = 0.0;
      (*it).second.ImageOrientationPatient[3] = 0.0;
      (*it).second.ImageOrientationPatient[4] = 1.0;
      (*it).second.ImageOrientationPatient[5] = 0.0;
    }

    // cache the value
    memcpy(this->ImageOrientationPatient, (*it).second.ImageOrientationPatient, 6 * sizeof(float));
  }
}

void DICOMAppHelper::TransferSyntaxCallback(
  DICOMParser* parser, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char* val, quadbyte)
{

#ifdef DEBUG_DICOM_APP_HELPER
#ifdef _WIN32
  char platformByteOrder = 'L';
#else
  char platformByteOrder = 'B';
#endif
  dicom_stream::cout << "Platform byte order: " << platformByteOrder << dicom_stream::endl;
#endif

  static const char* TRANSFER_UID_EXPLICIT_BIG_ENDIAN = "1.2.840.10008.1.2.2";

  // Only add the ToggleSwapBytes callback when we need it.
  if (strcmp(TRANSFER_UID_EXPLICIT_BIG_ENDIAN, reinterpret_cast<char*>(val)) == 0)
  {
    this->ByteSwapData = true;
    parser->AddDICOMTagCallback(0x0800, 0x0000, DICOMParser::VR_UNKNOWN, ToggleSwapBytesCB);
#ifdef DEBUG_DICOM_APP_HELPER
    dicom_stream::cerr << "Registering callback for swapping bytes." << dicom_stream::endl;
#endif
  }

  delete this->TransferSyntaxUID;
  this->TransferSyntaxUID = new dicom_stl::string(reinterpret_cast<char*>(val));

#ifdef DEBUG_DICOM_APP_HELPER
  dicom_stream::cout << "Transfer Syntax UID: " << *this->TransferSyntaxUID;
  dicom_stream::cout << " " << this->TransferSyntaxUIDDescription(this->TransferSyntaxUID->c_str())
                     << dicom_stream::endl;
#endif
}

void DICOMAppHelper::BitsAllocatedCallback(
  DICOMParser* parser, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char* val, quadbyte)
{
  this->BitsAllocated =
    DICOMFile::ReturnAsUnsignedShort(val, parser->GetDICOMFile()->GetPlatformIsBigEndian());
#ifdef DEBUG_DICOM_APP_HELPER
  dicom_stream::cout << "Bits allocated: " << this->BitsAllocated << dicom_stream::endl;
#endif
}

void DICOMAppHelper::ToggleSwapBytesCallback(
  DICOMParser* parser, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char*, quadbyte len)
{
#ifdef DEBUG_DICOM_APP_HELPER
  dicom_stream::cout << "ToggleSwapBytesCallback" << dicom_stream::endl;
#endif
  bool bs = parser->GetDICOMFile()->GetPlatformIsBigEndian();
  parser->GetDICOMFile()->SetPlatformIsBigEndian(!bs);

#ifdef DEBUG_DICOM_APP_HELPER
  dicom_stream::cout << "Set byte swap to: " << parser->GetDICOMFile()->GetPlatformIsBigEndian()
                     << dicom_stream::endl;
#endif

  long pos = parser->GetDICOMFile()->Tell();

  //
  // The +4 is probably a hack, but it's a guess at the length of the previous field.
  //
  parser->GetDICOMFile()->SkipToPos(pos - len + 4);
}

//
// 0028,0030 is Pixel Spacing, which is NOT the pixel spacing for modality such as US, or X-ray
// see Imager Pixel Spacing and Pixel Ratio instead
//
void DICOMAppHelper::PixelSpacingCallback(DICOMParser* parser, doublebyte group, doublebyte element,
  DICOMParser::VRTypes, unsigned char* val, quadbyte)
{
  if (group == 0x0028 && element == 0x0030)
  {
    if (!val ||
      sscanf(reinterpret_cast<char*>(val), "%f\\%f", &this->PixelSpacing[0],
        &this->PixelSpacing[1]) != 2)
    {
      this->PixelSpacing[0] = this->PixelSpacing[1] = 0.0;
    }
  }
  else if (group == 0x0018 && element == 0x0050)
  {
    if (!val)
    {
      this->PixelSpacing[2] = 0.0;
    }
    else
    {
      this->PixelSpacing[2] =
        DICOMFile::ReturnAsFloat(val, parser->GetDICOMFile()->GetPlatformIsBigEndian());
    }
  }
}

void DICOMAppHelper::WidthCallback(
  DICOMParser* parser, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char* val, quadbyte)
{
  unsigned short uival =
    DICOMFile::ReturnAsUnsignedShort(val, parser->GetDICOMFile()->GetPlatformIsBigEndian());
#ifdef DEBUG_DICOM_APP_HELPER
  dicom_stream::cout << "Width: " << uival << dicom_stream::endl;
#endif

  this->Width = uival;
  this->Dimensions[0] = this->Width;
}

void DICOMAppHelper::HeightCallback(
  DICOMParser* parser, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char* val, quadbyte)
{
  unsigned short uival =
    DICOMFile::ReturnAsUnsignedShort(val, parser->GetDICOMFile()->GetPlatformIsBigEndian());
#ifdef DEBUG_DICOM_APP_HELPER
  dicom_stream::cout << "Height: " << uival << dicom_stream::endl;
#endif
  this->Height = uival;
  this->Dimensions[1] = this->Height;
}

void DICOMAppHelper::PixelRepresentationCallback(
  DICOMParser* parser, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char* val, quadbyte)
{
  unsigned short uival =
    DICOMFile::ReturnAsUnsignedShort(val, parser->GetDICOMFile()->GetPlatformIsBigEndian());
#ifdef DEBUG_DICOM_APP_HELPER
  dicom_stream::cout << "Pixel Representation: " << (uival ? "Signed" : "Unsigned")
                     << dicom_stream::endl;
#endif
  this->PixelRepresentation = uival;
}

void DICOMAppHelper::PhotometricInterpretationCallback(
  DICOMParser*, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char* val, quadbyte)
{
#ifdef DEBUG_DICOM_APP_HELPER
  dicom_stream::cout << "Photometric Interpretation: " << (char*)val << dicom_stream::endl;
#endif
  delete this->PhotometricInterpretation;

  this->PhotometricInterpretation = new dicom_stl::string(reinterpret_cast<char*>(val));
}

void DICOMAppHelper::PixelDataCallback(
  DICOMParser*, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char* data, quadbyte len)
{
  int numPixels = this->Dimensions[0] * this->Dimensions[1] * this->GetNumberOfComponents();
  if (len < numPixels)
  {
    numPixels = len;
  }
  if (numPixels < 0)
  {
    numPixels = 0;
  }

#ifdef DEBUG_DICOM_APP_HELPER
  dicom_stream::cout << "numPixels : " << numPixels << dicom_stream::endl;
#endif

  int ptrIncr = int(this->BitsAllocated / 8.0);

  unsigned short* ushortInputData = reinterpret_cast<unsigned short*>(data);
  unsigned char* ucharInputData = data;
  short* shortInputData = reinterpret_cast<short*>(data);

  float* floatOutputData; // = nullptr;

  bool isFloat = this->RescaledImageDataIsFloat();

  if (isFloat)
  {
#ifdef DEBUG_DICOM_APP_HELPER
    dicom_stream::cout << "Slope and offset are not integer valued : ";
    dicom_stream::cout << this->RescaleSlope << ", " << this->RescaleOffset << dicom_stream::endl;
#endif
    delete[](static_cast<char*>(this->ImageData));
    this->ImageData = new float[numPixels];
    floatOutputData = static_cast<float*>(this->ImageData);

    this->ImageDataType = DICOMParser::VR_FL;
    unsigned long uNumPixels = static_cast<unsigned long>(numPixels);
    this->ImageDataLengthInBytes = uNumPixels * sizeof(float);
    float newFloatPixel;

    if (ptrIncr == 1)
    {
      for (int i = 0; i < numPixels; i++)
      {
        newFloatPixel = float(static_cast<double>(this->RescaleSlope) * ucharInputData[i] +
          static_cast<double>(this->RescaleOffset));
        floatOutputData[i] = newFloatPixel;
      }
#ifdef DEBUG_DICOM_APP_HELPER
      dicom_stream::cout << "Did rescale, offset to float from char." << dicom_stream::endl;
      dicom_stream::cout << numPixels << " pixels." << dicom_stream::endl;
#endif
    }
    else if (ptrIncr == 2)
    {
      for (int i = 0; i < numPixels; i++)
      {
        newFloatPixel = float(static_cast<double>(this->RescaleSlope) * ushortInputData[i] +
          static_cast<double>(this->RescaleOffset));
        floatOutputData[i] = newFloatPixel;
      }
#ifdef DEBUG_DICOM_APP_HELPER
      dicom_stream::cout << "Did rescale, offset to float from short." << dicom_stream::endl;
      dicom_stream::cout << numPixels << " pixels." << dicom_stream::endl;
#endif
    }
  }
  else
  {
#ifdef DEBUG_DICOM_APP_HELPER
    dicom_stream::cout << "Slope and offset are integer valued : ";
    dicom_stream::cout << this->RescaleSlope << ", " << this->RescaleOffset << dicom_stream::endl;
#endif

    if (ptrIncr == 1)
    {
      delete[](static_cast<char*>(this->ImageData));
      this->ImageData = new char[numPixels];

      char* charOutputData = static_cast<char*>(this->ImageData);

      this->ImageDataType = DICOMParser::VR_OB;
      unsigned long uNumPixels = static_cast<unsigned long>(numPixels);
      this->ImageDataLengthInBytes = uNumPixels * sizeof(char);
      char newCharPixel;

      for (int i = 0; i < numPixels; i++)
      {
        newCharPixel = char(static_cast<double>(this->RescaleSlope) * ucharInputData[i] +
          static_cast<double>(this->RescaleOffset));
        charOutputData[i] = newCharPixel;
      }
#ifdef DEBUG_DICOM_APP_HELPER
      dicom_stream::cout << "Did rescale, offset to char from char." << dicom_stream::endl;
      dicom_stream::cout << numPixels << " pixels." << dicom_stream::endl;
#endif
    }
    else if (ptrIncr == 2)
    {
      delete[](static_cast<char*>(this->ImageData));
      this->ImageData = new short[numPixels];
      short* shortOutputData = static_cast<short*>(this->ImageData);

      this->ImageDataType = DICOMParser::VR_OW;
      unsigned long uNumPixels = static_cast<unsigned long>(numPixels);
      this->ImageDataLengthInBytes = uNumPixels * sizeof(short);
      short newShortPixel;
      for (int i = 0; i < numPixels; i++)
      {
        newShortPixel = short(static_cast<double>(this->RescaleSlope) * shortInputData[i] +
          static_cast<double>(this->RescaleOffset));
        shortOutputData[i] = newShortPixel;
      }
#ifdef DEBUG_DICOM_APP_HELPER
      dicom_stream::cout << "Did rescale, offset to short from short." << dicom_stream::endl;
      dicom_stream::cout << numPixels << " pixels." << dicom_stream::endl;
#endif
    }
  }
}

void DICOMAppHelper::RegisterPixelDataCallback(DICOMParser* parser)
{
  this->PixelDataCB->SetCallbackFunction(this, &DICOMAppHelper::PixelDataCallback);
  parser->AddDICOMTagCallback(0x7FE0, 0x0010, DICOMParser::VR_OW, this->PixelDataCB);
}

void DICOMAppHelper::RescaleOffsetCallback(
  DICOMParser* parser, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char* val, quadbyte)
{
  float fval = DICOMFile::ReturnAsFloat(val, parser->GetDICOMFile()->GetPlatformIsBigEndian());
  this->RescaleOffset = fval;
#ifdef DEBUG_DICOM_APP_HELPER
  dicom_stream::cout << "Pixel offset: " << this->RescaleOffset << dicom_stream::endl;
#endif
}

const char* DICOMAppHelper::TransferSyntaxUIDDescription(const char* uid)
{
  static const char* DICOM_IMPLICIT_VR_LITTLE_ENDIAN = "1.2.840.10008.1.2";
  static const char* DICOM_LOSSLESS_JPEG = "1.2.840.10008.1.2.4.70";
  static const char* DICOM_LOSSY_JPEG_8BIT = "1.2.840.10008.1.2.4.50";
  static const char* DICOM_LOSSY_JPEG_16BIT = "1.2.840.10008.1.2.4.51";
  static const char* DICOM_EXPLICIT_VR_LITTLE_ENDIAN = "1.2.840.10008.1.2.1";
  static const char* DICOM_EXPLICIT_VR_BIG_ENDIAN = "1.2.840.10008.1.2.2";
  static const char* DICOM_GE_PRIVATE_IMPLICIT_BIG_ENDIAN = "1.2.840.113619.5.2";

  if (!strcmp(DICOM_IMPLICIT_VR_LITTLE_ENDIAN, uid))
  {
    return "Implicit VR, Little Endian";
  }
  else if (!strcmp(DICOM_LOSSLESS_JPEG, uid))
  {
    return "Lossless JPEG";
  }
  else if (!strcmp(DICOM_LOSSY_JPEG_8BIT, uid))
  {
    return "Lossy JPEG 8 bit";
  }
  else if (!strcmp(DICOM_LOSSY_JPEG_16BIT, uid))
  {
    return "Lossy JPEG 16 bit.";
  }
  else if (!strcmp(DICOM_EXPLICIT_VR_LITTLE_ENDIAN, uid))
  {
    return "Explicit VR, Little Endian.";
  }
  else if (!strcmp(DICOM_EXPLICIT_VR_BIG_ENDIAN, uid))
  {
    return "Explicit VR, Big Endian.";
  }
  else if (!strcmp(DICOM_GE_PRIVATE_IMPLICIT_BIG_ENDIAN, uid))
  {
    return "GE Private, Implicit VR, Big Endian Image Data.";
  }
  else
  {
    return "Unknown.";
  }
}

void DICOMAppHelper::RescaleSlopeCallback(
  DICOMParser* parser, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char* val, quadbyte)
{
  float fval = DICOMFile::ReturnAsFloat(val, parser->GetDICOMFile()->GetPlatformIsBigEndian());
#ifdef DEBUG_DICOM_APP_HELPER
  dicom_stream::cout << "Rescale slope: " << fval << dicom_stream::endl;
#endif
  this->RescaleSlope = fval;
}

bool DICOMAppHelper::RescaledImageDataIsFloat()
{
  int s = int(this->RescaleSlope);
  int o = int(this->RescaleOffset);

  float sf = float(s);
  float of = float(o);

  double d1 = fabs(sf - this->RescaleSlope);
  double d2 = fabs(of - this->RescaleOffset);

  return d1 > 0.0 || d2 > 0.0;
}

void DICOMAppHelper::GetImageData(void*& data, DICOMParser::VRTypes& dataType, unsigned long& len)
{
  data = this->ImageData;
  dataType = this->ImageDataType;
  len = this->ImageDataLengthInBytes;
}

bool DICOMAppHelper::RescaledImageDataIsSigned()
{
  bool rescaleSigned = (this->RescaleSlope < 0.0);
  bool pixelRepSigned = (this->PixelRepresentation == 1);
  bool offsetSigned = (this->RescaleOffset < 0.0);

  return (rescaleSigned || pixelRepSigned || offsetSigned);
}

void DICOMAppHelper::GetSliceNumberFilenamePairs(const dicom_stl::string& seriesUID,
  dicom_stl::vector<dicom_stl::pair<int, dicom_stl::string>>& v, bool ascending)
{
  v.clear();

  dicom_stl::map<dicom_stl::string, dicom_stl::vector<dicom_stl::string>, ltstdstr>::iterator
    miter = this->Implementation->SeriesUIDMap.find(seriesUID);

  if (miter == this->Implementation->SeriesUIDMap.end())
  {
    return;
  }

  // grab the filenames for the specified series
  dicom_stl::vector<dicom_stl::string> files = (*miter).second;

  for (dicom_stl::vector<dicom_stl::string>::iterator fileIter = files.begin();
       fileIter != files.end(); ++fileIter)
  {
    dicom_stl::pair<int, dicom_stl::string> p;
    p.second = dicom_stl::string(*fileIter);
    int slice_number;
    dicom_stl::map<dicom_stl::string, DICOMOrderingElements, ltstdstr>::iterator sn_iter =
      Implementation->SliceOrderingMap.find(*fileIter);
    // Only store files that have a valid slice number
    if (sn_iter != Implementation->SliceOrderingMap.end())
    {
      slice_number = (*sn_iter).second.SliceNumber;
      p.first = slice_number;
      v.push_back(p);
    }
  }
  if (ascending)
  {
    dicom_stl::sort(v.begin(), v.end(), lt_pair_int_string());
  }
  else
  {
    dicom_stl::sort(v.begin(), v.end(), gt_pair_int_string());
  }
}

void DICOMAppHelper::GetSliceNumberFilenamePairs(
  dicom_stl::vector<dicom_stl::pair<int, dicom_stl::string>>& v, bool ascending)
{
  // Default to using the first series
  if (!this->Implementation->SeriesUIDMap.empty())
  {
    this->GetSliceNumberFilenamePairs(
      (*this->Implementation->SeriesUIDMap.begin()).first, v, ascending);
  }
  else
  {
    v.clear();
  }
}

void DICOMAppHelper::GetSliceLocationFilenamePairs(const dicom_stl::string& seriesUID,
  dicom_stl::vector<dicom_stl::pair<float, dicom_stl::string>>& v, bool ascending)
{
  v.clear();

  dicom_stl::map<dicom_stl::string, dicom_stl::vector<dicom_stl::string>, ltstdstr>::iterator
    miter = this->Implementation->SeriesUIDMap.find(seriesUID);

  if (miter == this->Implementation->SeriesUIDMap.end())
  {
    return;
  }

  // grab the filenames for the specified series
  dicom_stl::vector<dicom_stl::string> files = (*miter).second;

  for (dicom_stl::vector<dicom_stl::string>::iterator fileIter = files.begin();
       fileIter != files.end(); ++fileIter)
  {
    dicom_stl::pair<float, dicom_stl::string> p;
    p.second = dicom_stl::string(*fileIter);
    float slice_location;
    dicom_stl::map<dicom_stl::string, DICOMOrderingElements, ltstdstr>::iterator sn_iter =
      Implementation->SliceOrderingMap.find(*fileIter);

    if (sn_iter != Implementation->SliceOrderingMap.end())
    {
      slice_location = (*sn_iter).second.SliceLocation;
      p.first = slice_location;
      v.push_back(p);
    }
  }
  if (ascending)
  {
    dicom_stl::sort(v.begin(), v.end(), lt_pair_float_string());
  }
  else
  {
    dicom_stl::sort(v.begin(), v.end(), gt_pair_float_string());
  }
}

void DICOMAppHelper::GetSliceLocationFilenamePairs(
  dicom_stl::vector<dicom_stl::pair<float, dicom_stl::string>>& v, bool ascending)
{
  // Default to using the first series
  if (!this->Implementation->SeriesUIDMap.empty())
  {
    this->GetSliceLocationFilenamePairs(
      (*this->Implementation->SeriesUIDMap.begin()).first, v, ascending);
  }
  else
  {
    v.clear();
  }
}

void DICOMAppHelper::GetImagePositionPatientFilenamePairs(const dicom_stl::string& seriesUID,
  dicom_stl::vector<dicom_stl::pair<float, dicom_stl::string>>& v, bool ascending)
{
  v.clear();

  dicom_stl::map<dicom_stl::string, dicom_stl::vector<dicom_stl::string>, ltstdstr>::iterator
    miter = this->Implementation->SeriesUIDMap.find(seriesUID);

  if (miter == this->Implementation->SeriesUIDMap.end())
  {
    return;
  }

  // grab the filenames for the specified series
  dicom_stl::vector<dicom_stl::string> files = (*miter).second;

  for (dicom_stl::vector<dicom_stl::string>::iterator fileIter = files.begin();
       fileIter != files.end(); ++fileIter)
  {
    dicom_stl::pair<float, dicom_stl::string> p;
    p.second = dicom_stl::string(*fileIter);

    float image_position;
    float normal[3];

    dicom_stl::map<dicom_stl::string, DICOMOrderingElements, ltstdstr>::iterator sn_iter =
      Implementation->SliceOrderingMap.find(*fileIter);

    if (sn_iter != Implementation->SliceOrderingMap.end())
    {
      // compute the image patient position wrt to the slice image
      // plane normal

      normal[0] = ((*sn_iter).second.ImageOrientationPatient[1] *
                    (*sn_iter).second.ImageOrientationPatient[5]) -
        ((*sn_iter).second.ImageOrientationPatient[2] *
          (*sn_iter).second.ImageOrientationPatient[4]);
      normal[1] = ((*sn_iter).second.ImageOrientationPatient[2] *
                    (*sn_iter).second.ImageOrientationPatient[3]) -
        ((*sn_iter).second.ImageOrientationPatient[0] *
          (*sn_iter).second.ImageOrientationPatient[5]);
      normal[2] = ((*sn_iter).second.ImageOrientationPatient[0] *
                    (*sn_iter).second.ImageOrientationPatient[4]) -
        ((*sn_iter).second.ImageOrientationPatient[1] *
          (*sn_iter).second.ImageOrientationPatient[3]);

      image_position = (normal[0] * (*sn_iter).second.ImagePositionPatient[0]) +
        (normal[1] * (*sn_iter).second.ImagePositionPatient[1]) +
        (normal[2] * (*sn_iter).second.ImagePositionPatient[2]);
      p.first = image_position;
      v.push_back(p);
    }
  }
  if (ascending)
  {
    dicom_stl::sort(v.begin(), v.end(), lt_pair_float_string());
  }
  else
  {
    dicom_stl::sort(v.begin(), v.end(), gt_pair_float_string());
  }
}

void DICOMAppHelper::GetImagePositionPatientFilenamePairs(
  dicom_stl::vector<dicom_stl::pair<float, dicom_stl::string>>& v, bool ascending)
{
  // Default to using the first series
  if (!this->Implementation->SeriesUIDMap.empty())
  {
    this->GetImagePositionPatientFilenamePairs(
      (*this->Implementation->SeriesUIDMap.begin()).first, v, ascending);
  }
  else
  {
    v.clear();
  }
}

void DICOMAppHelper::GetSeriesUIDs(dicom_stl::vector<dicom_stl::string>& v)
{
  v.clear();

  dicom_stl::map<dicom_stl::string, dicom_stl::vector<dicom_stl::string>, ltstdstr>::iterator miter;

  for (miter = this->Implementation->SeriesUIDMap.begin();
       miter != this->Implementation->SeriesUIDMap.end(); ++miter)
  {
    v.push_back((*miter).first);
  }
}

void DICOMAppHelper::Clear()
{
  this->Implementation->SliceOrderingMap.clear();
  this->Implementation->SeriesUIDMap.clear();
}

void DICOMAppHelper::PatientNameCallback(
  DICOMParser*, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char* val, quadbyte)
{
  delete this->PatientName;

  if (val)
  {
    this->PatientName = new dicom_stl::string(reinterpret_cast<char*>(val));
  }
  else
  {
    this->PatientName = new dicom_stl::string();
  }
}

void DICOMAppHelper::StudyUIDCallback(
  DICOMParser*, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char* val, quadbyte)
{
  delete this->StudyUID;

  if (val)
  {
    this->StudyUID = new dicom_stl::string(reinterpret_cast<char*>(val));
  }
  else
  {
    this->StudyUID = new dicom_stl::string();
  }
}

void DICOMAppHelper::StudyIDCallback(
  DICOMParser*, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char* val, quadbyte)
{
  delete this->StudyID;

  if (val)
  {
    this->StudyID = new dicom_stl::string(reinterpret_cast<char*>(val));
  }
  else
  {
    this->StudyID = new dicom_stl::string();
  }
}

void DICOMAppHelper::GantryAngleCallback(
  DICOMParser* parser, doublebyte, doublebyte, DICOMParser::VRTypes, unsigned char* val, quadbyte)
{
  float fval = 0;

  if (val)
  {
    fval = DICOMFile::ReturnAsFloat(val, parser->GetDICOMFile()->GetPlatformIsBigEndian());
  }

  this->GantryAngle = fval;
}

#ifdef _MSC_VER
#pragma warning(pop)
#endif
