/* Philip T.L.C. Clausen Sep 2021 plan@dtu.dk */

/*
 * Copyright (c) 2021, Philip Clausen, Technical University of Denmark
 * All rights reserved.
 * 
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 * 
 *		http://www.apache.org/licenses/LICENSE-2.0
 * 
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
*/

#include <stdio.h>
#include "assembly.h"

void initsv(FILE *outfile, long unsigned flag);
void printsv(FILE *outfile, long unsigned flag, char *template_name, Assem *aligned_assem, int t_len, unsigned readCount, long unsigned read_score, double expected, double q_value, double p_value, long unsigned ConClave_Score);
