kalign (1:3.3.4-2) unstable; urgency=medium

  * Team Upload.
  * install kalignfmt for other archs as well

 -- Nilesh Patra <nilesh@debian.org>  Sun, 06 Nov 2022 04:16:14 +0530

kalign (1:3.3.4-1) unstable; urgency=medium

  [ Andreas Tille ]
  * Team Upload.
  * Fix watch file
  * New upstream version
  * Standards-Version: 4.6.1 (routine-update)

  [ Nilesh Patra ]
  * d/control:
    + Add B-D on cmake
    + Remove B-D on libsimde-dev, also remove Built-Using field.
  * debian/patches:
    + Drop keep-debugging: debug flags are being passed now w/ cmake
    + Drop debian/patches/no-native-build: no native build anymore
    + Drop simde patch: no longer needed, upstream has added
      conditions for inclusions on higher SIMD levels
      of intel-specific header files
    + Add pass-proper-flags.patch: Set proper cflags/cxxflags for other simd
      levels than avx2, otherwise cflags are set to baseline for other supported
      simd levels.
  * d/rules:
    + Update rules layout from scratch as buildsystem changed
      from autotools -> cmake
    + Remove timescorealn as this is no longer provided/installed, change
      that with kalignfmt
    + Disable building shared lib, which is set to ON by default w/ this
      release.
      The SOLIBS should move into a new lib package anyway, and should not be
      here in the binary package
    + Install all relevant simd level binaries properly
    + Test binary for every simd level
    + Remove static lib and .cmake files which should not be present
      with this bin package
    + Install simd-dispatcher script for amd64
  * d/t/run-unit-test:
    + Kalign no longer allows un-aligned seq to be re-formatted,
      hence removing test 7
  * Manpage changes:
    + Add manpage for kalignfmt and update old manpage for kalign
    + Remove manpage for timescorealn
  * Update installing examples at right location
    + dev/ dir has been pruned, change that to tests/data
  * Add d/clean for cleaning obj-*
  * Update dispatcher script to supported simd levels
  * Remove copyright notices/mentions of autoconf stuff which has been removed
  * Remove author notice from manpage
  * Mention myself in the copyright
  * Disable reprotest in salsa CI

 -- Nilesh Patra <nilesh@debian.org>  Sat, 05 Nov 2022 22:20:20 +0000

kalign (1:3.3.2-1) unstable; urgency=medium

  * New upstream version
  * Refresh SIMDE patch

 -- Andreas Tille <tille@debian.org>  Mon, 02 May 2022 14:39:41 +0200

kalign (1:3.3.1-1) unstable; urgency=medium

  * Fix watchfile to detect new versions on github
  * New upstream version
  * Standards-Version: 4.6.0 (routine-update)

 -- Andreas Tille <tille@debian.org>  Fri, 01 Oct 2021 13:15:46 +0200

kalign (1:3.3-1) unstable; urgency=medium

  * Team upload.
  * debian/watch: fix syntax
  * refresh patches; drop "hardening", it was applied upstream.
  * Added a patch to retain debugging symbols

 -- Michael R. Crusoe <crusoe@debian.org>  Fri, 06 Nov 2020 10:40:38 +0100

kalign (1:3.2.3-4) unstable; urgency=medium

  * Team Upload.
  [ Michael R. Crusoe ]
  * patches forwarded upstream

  [ Nilesh Patra ]
  * Fix gcc-10 FTBFS (Closes: #966865)
  * Add manpages
  * compat version: 13, run wrap-and-sort

 -- Nilesh Patra <npatra974@gmail.com>  Tue, 04 Aug 2020 21:43:28 +0000

kalign (1:3.2.3-3) unstable; urgency=medium

  * Team upload.
  * Use the libsimde-dev package instead of our code copy

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 20 Apr 2020 19:13:36 +0200

kalign (1:3.2.3-2) unstable; urgency=medium

  * Team upload.
  * Add non-AVX2 compatability using the SIMD Everywhere library
  * Compile using all levels of SIMD CPU support and restructure package
    with a "simd-dispatch" script
  * debian/patches/hardening: keep the provided CFLAGS

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 30 Mar 2020 20:25:57 +0200

kalign (1:3.2.3-1) unstable; urgency=medium

  * Team upload.

  [ Charles Plessy ]
  * New upstream version (packaging in progress).

  [ Andreas Tille ]
  * Standards-Version: 4.5.0 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Use secure URI in Homepage field.
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.
  * Remove obsolete fields Contact, Name from debian/upstream/metadata
    (already present in machine-readable debian/copyright).

  [ Pranav Ballaney ]
  * Fix autopkgtest and add more test

 -- Pranav Ballaney <ballaneypranav@gmail.com>  Sat, 21 Mar 2020 01:35:29 +0530

kalign (1:2.03+20110620-5) unstable; urgency=medium

  [ Jelmer Vernooĳ ]
  * Use secure copyright file specification URI.

  [ Andreas Tille ]
  * Fake watch file
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.3.0

 -- Andreas Tille <tille@debian.org>  Tue, 08 Jan 2019 13:51:16 +0100

kalign (1:2.03+20110620-4) unstable; urgency=medium

  * propagate CC from ./configure to make (Thanks for the patch to Helmut Grohne
    <helmut@subdivi.de>)
    Closes: #890256
  * Standards-Version: 4.1.3
  * debhelper 11

 -- Andreas Tille <tille@debian.org>  Mon, 12 Feb 2018 16:39:29 +0100

kalign (1:2.03+20110620-3) unstable; urgency=low

  * Team upload

  [ Andreas Tille ]
  * debian/upstream: Added some information from debian/reference
  * debian/reference: Removed in favour of debian/upstream
  * Moved packaging from SVN to Git
  * cme fix dpkg-control
  * add hardening options

  [ Canberk Koç ]
  * Autopkgtest added

 -- Canberk Koç <canberkkoc@gmail.com>  Thu, 28 Jul 2016 03:06:04 +0300

kalign (1:2.03+20110620-2) unstable; urgency=low

  [ Charles Plessy ]
  * renamed debian/upstream-metadata.yaml to debian/upstream

  [ Andreas Tille ]
  * debian/upstream:
     - Added another citation from tasks file
     - Fixed Homepage
  * debian/source/format: 3.0 (quilt)
  * debian/watch: Fixed hint to download URL
  * debian/control:
     - Fixed Homepage
     - Standards-Version: 3.9.3 (no changes needed)
  * debian/copyright: Fixed DEP5 issues and verified using
      cme fix dpkg-copyright
  * debhelper 9 (control+compat)

 -- Andreas Tille <tille@debian.org>  Thu, 29 Mar 2012 15:28:43 +0200

kalign (1:2.03+20110620-1) unstable; urgency=low

  * New upstream release.
    Using 2.04 as a version number was a mistake of mine, it should have been
    called 2.03+20081031 as Upstream sometimes updates the source archive
    ‘current.tar.gz’ without incrementing the version number.
  * Collected information about Upstream in ‘debian/upstream-metadata.yaml’.
  * Using Debhelper 8 (debian/compat, debian/control).
  * Corrected VCS information in debian/control.
  * Enhances: bioperl-run, that has a kalign wrapper (debian/control).
  * Incremented Standards-Version to reflect conformance with Policy 3.9.2.
    (debian/control, no changes needed).

 -- Charles Plessy <plessy@debian.org>  Sat, 25 Jun 2011 17:23:01 +0900

kalign (2.04-2) unstable; urgency=low

  [ David Paleino ]
  * Removed myself from Uploaders

  [ Andreas Tille ]
  * debian/control:
    - Standards-Version: 3.8.3
    - debhelper (>= 7.1) to use override facility
  * debian/rules:
    - removed code to create manpage - just keep the created one
    - short rules file using dh
  * debian/watch:
    - deactivated; upstream does not seem to respond to our request
      to enable versioned tarballs - so the watch file makes no sense
      Closes: #456479
  * Applied patch to enable bash completion.  Thanks to David Paleino
    <d.paleino@gmail.com>
    Closes: #446047

 -- Andreas Tille <tille@debian.org>  Tue, 06 Oct 2009 16:21:45 +0200

kalign (2.04-1) unstable; urgency=low

  * New upstream release.
  * debian/copyright made machine-readable.
  * debian/rules: replaced deprecated dh_clean -k by dh_prep.
  * debian/control:
    - Updated my email address (debian/control).
    - Checked compliance with Policy 3.8.0 (no changes needed).
    - Using debhelper 7 (also in debian/compat).
    - Upadated description and moved reference to debian/reference.
  * debian/kalign.1*: updated the manual pages.

 -- Charles Plessy <plessy@debian.org>  Thu, 26 Feb 2009 00:19:44 +0900

kalign (2.03-2) unstable; urgency=low

  [ Charles Plessy ]
  * debian/control:
    - Add Subversion repository URL to debian/control.
    - Moved the Homepage: field out from the package's description.
    - Enhances: t-coffee.

  [ David Paleino ]
  * debian/kalign.1 added - manpages are now statically generated
  * debian/control:
    - B-D updated (see above)
    - added myself to Uploaders
    - moved XS-Vcs-* fields to Vcs-*
  * debian/rules:
    - reflecting static build of manpages
    - minor changes
  * Updated to Standards-Version 3.7.3 (no changes needed)

  [ Andreas Tille ]
  * Added myself to Uploaders

 -- Andreas Tille <tille@debian.org>  Tue, 18 Mar 2008 09:54:17 +0100

kalign (2.03-1) unstable; urgency=low

  * New upstream release.
  * Mended the watch file.
  * Updated the manpage.

 -- Charles Plessy <charles-debian-nospam@plessy.org>  Wed, 21 Feb 2007 09:07:33 +0900

kalign (1.04-1) unstable; urgency=low

  * Initial release Closes: #365344

 -- Charles Plessy <charles-debian-nospam@plessy.org>  Sat, 29 Apr 2006 23:02:57 +0900
