#Comment lines follow the hash symbol
JALVIEW_ANNOTATION
SEQUENCE_REF	FER1_MESCR	5
BAR_GRAPH	Bar Graph 1	<html>an <em>html tooltip</em> for Bar graph 1.</html>	||-100,-|-200,-|-300,-|-400,-|200,+|300,+|150,+
LINE_GRAPH	Green Values	1.1|2.2|1.3|3.4|0.7|1.4|3.3|2.2|2.1|-1.1|3.2
LINE_GRAPH	Red Values	2.1|3.2|1.3|-1.4|5.5|1.4|1.3|4.2|-1.1|1.1|3.2
LINE_GRAPH	Blue Values	0|0|0|1.1|2.2|1.3|3.4|0.7|1.4|3.3|2.2
LINE_GRAPH	Yellow Values	3.0|3.0|3.0|2.1|3.2|1.3|-1.4|5.5|1.4|1.3|4.2

BAR_GRAPH	Bar Graph	2 1,.|2,*|3,:|4,.|5,*|4,:|3,.|2|1|1|2|3|4|5|4

NO_GRAPH	Icons 	||||E,Sheet1|E|E||||H,Sheet 2|H|H|H||||||
NO_GRAPH	Purple Letters	m|y|p|r|o|t|e|i|n
COLOUR	Bar Graph 2	blue
COLOUR	Red Values	255,0,0
COLOUR	Green Values	green
COLOUR	Blue Values	blue
COLOUR	Yellow Values	yellow
COLOUR	Purple Letters	151,52,228

COMBINE	Green Values	Red Values
COMBINE	Blue Values	Yellow Values

GRAPHLINE	Red Values	2.6	threshold	black

SEQUENCE_GROUP	Group_A	30	50	*
SEQUENCE_GROUP	Group_B	1	351	2-5
SEQUENCE_GROUP	Group_C	12	14	-1	seq1	seq2	seq3
PROPERTIES	Group_A	description=This is the description	colour=Helix Propensity	pidThreshold=0	outlineColour=red	displayBoxes=true	displayText=false	colourText=false	textCol1=black	textCol2=black	textColThreshold=0
PROPERTIES	Group_B	outlineColour=red
PROPERTIES	Group_C	colour=Clustal
