fastqc (0.12.1+dfsg-1) experimental; urgency=medium

  * Team upload.
  * New upstream version 0.12.1+dfsg (Closes: #1032566)
  * Refresh patches for upstream 0.12.1
  * Freshen years in debian/copyright
  * Bump Standards-Version to 4.6.2

 -- tony mancill <tmancill@debian.org>  Thu, 02 Mar 2023 21:02:32 -0800

fastqc (0.11.9+dfsg-6) unstable; urgency=medium

  * Fix watch file
  * Standards-Version: 4.6.1 (routine-update)

 -- Andreas Tille <tille@debian.org>  Thu, 03 Nov 2022 14:05:51 +0100

fastqc (0.11.9+dfsg-5) unstable; urgency=medium

  * Fix watchfile to detect new versions on github
  * Standards-Version: 4.6.0 (routine-update)
  * debhelper-compat 13 (routine-update)

 -- Andreas Tille <tille@debian.org>  Thu, 14 Oct 2021 08:46:09 +0200

fastqc (0.11.9+dfsg-4) unstable; urgency=medium

  * Provide run-unit-test as user example
  * Package libsis-jhdf5-java is back so drop the patch avoiding it

 -- Andreas Tille <tille@debian.org>  Thu, 07 May 2020 09:54:37 +0200

fastqc (0.11.9+dfsg-3) unstable; urgency=medium

  [ tony mancill ]
  * Team upload.
  * Update autopkgtests to compare summary output (Closes: #950311)

  [ Andreas Tille ]
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set upstream metadata fields: Repository, Repository-Browse.

 -- tony mancill <tmancill@debian.org>  Mon, 06 Apr 2020 15:26:31 -0700

fastqc (0.11.9+dfsg-2) unstable; urgency=medium

  * Fix and enhance autopkgtest
  * Standards-Version: 4.5.0 (routine-update)
  * Use secure URI in Homepage field.
  * Set field Upstream-Contact in debian/copyright.
  * Set upstream metadata fields: Bug-Database, Bug-Submit.
  * Remove obsolete fields Contact, Name from debian/upstream/metadata
    (already present in machine-readable debian/copyright).

 -- Andreas Tille <tille@debian.org>  Fri, 31 Jan 2020 11:24:32 +0100

fastqc (0.11.9+dfsg-1) unstable; urgency=medium

  * New upstream version
  * debhelper-compat 12 (routine-update)
  * Standards-Version: 4.4.1 (routine-update)
  * Updated patches.

 -- Steffen Moeller <moeller@debian.org>  Sun, 12 Jan 2020 22:40:39 +0100

fastqc (0.11.8+dfsg-2) unstable; urgency=medium

  * Team upload.

  [ Jelmer Vernooĳ ]
  * Trim trailing whitespace.
  * Use secure copyright file specification URI.

  [ Michael R. Crusoe ]
  * debian/fastqc.desktop: Update path to the icon.

  [ Dylan Aïssi ]
  * Update d/patches/htsjdk-api.patch to fix processing
      of SAM/BAM files (Closes: #897109). Thanks to Chris Norman.

 -- Dylan Aïssi <daissi@debian.org>  Tue, 21 May 2019 22:20:32 +0200

fastqc (0.11.8+dfsg-1) unstable; urgency=medium

  * New upstream release.

  * Standards-Version: 4.2.1

 -- Steffen Moeller <moeller@debian.org>  Wed, 17 Oct 2018 19:25:09 +0200

fastqc (0.11.7+dfsg-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * debian/upstream/metadata: Added references to
    OMICtools, SciCrunch, bio.tools registries

  [ Andreas Tille ]
  * New upstream version
  * Standards-Version: 4.1.4
  * Point Vcs-fields to Salsa
  * debhelper 11
  * Depends: libfindbin-libs-perl
    Closes: #896931
  * Drop alternative Depends: java7-runtime
  * Set Java 9 as build target

 -- Andreas Tille <tille@debian.org>  Fri, 27 Apr 2018 08:31:31 +0200

fastqc (0.11.5+dfsg-6) unstable; urgency=medium

  * Team upload.
  * Avoid use of SAMFileReader to fix FTBFS.
    Closes: #846708
  * Add autopkgtest cases and accompanying test data
    for SAM/BAM input files.
  * Make sure jar dependencies are found. Before fixing this,
    htsjdk classes were not found at runtime. This problem only
    surfaced with BAM/SAM inputs, which were not tested so far.

 -- Sascha Steinbiss <satta@debian.org>  Thu, 08 Dec 2016 15:40:00 +0000

fastqc (0.11.5+dfsg-5) unstable; urgency=medium

  [ Gilles Filippini ]
  * New patch drop-fast5.patch to temporarily drop support for fast5
    file format. This way we can drop the build-dependency on
    libsis-jhdf5-java which doesn't support HDF5 1.10 yet (#842815).
    fast5 files can easily be converted to fastq using poretools.
    Closes: #844760

  [ Andreas Tille ]
  * debhelper 10
  * d/watch: version=4

 -- Andreas Tille <tille@debian.org>  Tue, 22 Nov 2016 14:43:31 +0100

fastqc (0.11.5+dfsg-4) unstable; urgency=low

  * Team upload.
  * Fix autopkgtest: add depend to unzip.
  * Install upstream changelog using dh_installchangelogs.

 -- Dylan Aïssi <bob.dybian@gmail.com>  Thu, 01 Sep 2016 23:05:15 +0200

fastqc (0.11.5+dfsg-3) unstable; urgency=medium

  * Team upload.

  [ Canberk Koç ]
  * Autopkgtest added

  [ Andreas Tille ]
  * cme fix dpkg-control

 -- Canberk Koç <canberkkoc@gmail.com>  Thu, 28 Jul 2016 02:04:17 +0300

fastqc (0.11.5+dfsg-2) unstable; urgency=medium

  * Reintroduced omitted Configuration directory

 -- Steffen Moeller <moeller@debian.org>  Wed, 06 Apr 2016 03:14:58 +0200

fastqc (0.11.5+dfsg-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * Contribued EDAM ontology description to
    debian/upstream/edam

  [ Andreas Tille ]
  * New upstream version
  * Add compression method to watch file
  * cme fix dpkg-control

 -- Andreas Tille <tille@debian.org>  Sun, 20 Mar 2016 14:30:17 +0100

fastqc (0.11.4+dfsg-3) unstable; urgency=medium

  * Build-Depends: libhtsjdk-java | libsam-java and try to enable
    htsjdk.jar in Build system

 -- Andreas Tille <tille@debian.org>  Thu, 14 Jan 2016 13:50:56 +0100

fastqc (0.11.4+dfsg-2) unstable; urgency=medium

  * Add explicit Depends: default-jre | java7-runtime
    Closes: #784057

 -- Andreas Tille <tille@debian.org>  Sun, 20 Dec 2015 20:01:08 +0100

fastqc (0.11.4+dfsg-1) unstable; urgency=medium

  * New upstream version
  * cme fix dpkg-control
  * deban/watch: fix version mangling
  * New Build-Depends: ant, libsis-hdf5-java
  * DEP5 issue solved by proper sequence of paragraphs
  * replace debian/menu by debian/fastqc.desktop

 -- Andreas Tille <tille@debian.org>  Sun, 06 Dec 2015 20:03:09 +0100

fastqc (0.11.2+dfsg-3) unstable; urgency=medium

  * d/control: Adapt Vcs-Fields to new location
  * d/rules: xz compression for repackaged upstream source
  * d/watch: uversionmangle instead of dversionmangle to get correct
    upstream tarball name
  * d/README.source: removed since outdated
  * d/manifest: Add /usr/share/java/commons-math3.jar (thanks for the patch
    to Danya Alexeyevsky <me.dendik@gmail.com>)
    Closes: #759543

 -- Andreas Tille <tille@debian.org>  Thu, 28 Aug 2014 13:34:32 +0200

fastqc (0.11.2+dfsg-2) unstable; urgency=medium

  * Fix Configuration dir loading (Closes: #756296).
      Files are in directroy /etc/fastqc/Configuration

 -- Olivier Sallou <osallou@debian.org>  Tue, 19 Aug 2014 09:06:07 +0200

fastqc (0.11.2+dfsg-1) unstable; urgency=medium

  * New upstream release

 -- Olivier Sallou <osallou@debian.org>  Mon, 09 Jun 2014 10:41:06 +0200

fastqc (0.10.1+dfsg-2) unstable; urgency=low

  * Add patch to fix Templates and Contaminants loading
    in non interactive mode (Closes: #697604)

 -- Olivier Sallou <osallou@debian.org>  Wed, 05 Jun 2013 17:08:44 +0200

fastqc (0.10.1+dfsg-1) unstable; urgency=low

  * Initial release (Closes: #670353)

 -- Andreas Tille <tille@debian.org>  Tue, 20 Nov 2012 13:38:32 +0100
