{"bio": {"ignore": ["riso", "smile", "catissuecore", "trapss"], "suggests": ["mozilla-biofox", "pdb2pqr", "biococoa.app"], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "treeviewx", "molphy", "phylip", "treetool", "fastlink", "loki", "r-cran-qtl", "amap-align", "blast2", "boxshade", "dialign", "gff2aplot", "emboss", "hmmer", "kalign", "mummer", "muscle", "poa", "probcons", "proda", "seaview", "sim4", "sibsim4", "sigma-align", "t-coffee", "wise", "exonerate", "arb", "clustalw | clustalw-mpi", "clustalx", "adun.app", "garlic", "gdpc", "ghemical", "gromacs", "pymol", "rasmol", "autodock", "autogrid", "plasmidomics", "biosquid", "gff2ps", "mipe", "melting", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "perlprimer", "primer3", "readseq", "tigr-glimmer", "dialign-tx", "glam2", "meme", "vienna-rna", "cytoscape", "ballview", "raxml", "axparafit", "axpcoords", "copycat", "mustang", "btk-core", "tacg", "treeplot", "treevolve", "infernal", "mauvealigner", "asap", "emboss-kaptain", "agdbnet", "gamgi", "martj", "cluster3", "jmol", "jtreeview", "smile", "cactus", "contralign", "galaxy", "genographer", "molekel", "pftools", "proalign", "ssaha", "ngila", "tm-align", "staden", "dazzle", "mgltools", "ecell", "ncoils", "haploview", "mauvealigner", "gbrowse", "mira", "phylographer", "phylowin", "seq-gen", "wgs-assembler", "gbioseq", "populations", "phpphylotree", "tracetuner", "plink", "twain", "rose", "glimmerhmm", "genezilla", "exalt", "jigsaw", "genesplicer", "mummergpu", "amos-assembler", "amoscmp", "minimus", "mage2tab", "bambus", "hawkeye", "murasaki", "gmv", "pyrophosphate-tools", "figaro", "velvet", "mirbase", "elph", "repeatfinder", "reputer", "transtermhp", "patman", "uniprime", "genetrack", "operondb", "velvet", "trnascan-se"], "recommends": [], "avoid": []}, "practice": {"ignore": ["clearhealth"], "suggests": [], "depends": ["gnumed-client", "libchipcardc2", "libchipcardd0", "mirth", "tinyheb", "gnumed-server"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "paw", "octave3.0", "r-base | r-base-core"], "recommends": [], "avoid": []}, "typesetting": {"ignore": [], "suggests": [], "depends": ["texlive-science", "texlive-latex-extra"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-base-core"], "depends": ["bioperl", "libncbi6-dev", "mcl", "libvibrant6-dev", "python-biopython", "libbio-ruby", "libqsearch-dev", "libgenome-1.3-1", "libbio-mage-perl", "libajax5-dev", "libnucleus5-dev", "bioconductor", "bioclipse", "aceperl", "libgff-perl", "libmems-1.5-1", "libbio-das-perl", "libbiojava-java", "limma", "libtfbs-perl", "libgo-perl", "libbio-mage-utils-perl", "seqan"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": ["zope-zms"], "depends": [], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["insighttoolkit3-examples", "libnifti-doc", "libvtk5"], "depends": ["ctn-dev", "cimg-dev", "libminc-dev", "libmdc2-dev", "libnifti1-dev", "libinsighttoolkit3-dev", "libvolpack1-dev", "odin", "libvista2-dev", "libmni-perllib-perl", "rumba", "nipy", "igstk"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick", "pngquant", "imview", "visit"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "nifti-bin", "dicomnifti", "libvolpack1", "aeskulap", "fslview", "fsl", "bioimagesuite", "drjekyll", "libvista2", "dcm4che", "gwyddion", "piano", "pixelmed", "slicer", "sofa", "mesa-test-tools", "gdcm", "dicom4j", "opendicom.net", "afni", "blox", "conquest-dicom-server", "dicomscope", "dicom3tools", "ecg2png", "kradview", "opensourcepacs", "pixelmed-dicom-toolkit", "caret", "mni-autoreg", "mni-n3", "brainvisa", "maris", "lipsia"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": [], "depends": ["epigrass", "netepi-analysis", "netepi-collection"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle", "pondus", "mssstest", "wgerman-medical", "hunspell-de-med"], "recommends": [], "avoid": []}}