Last-Update: Wed, 12 Aug 2020 09:23:06 +0200

              package               |    architectures    | section  |                       releases                        |        conda         |     bio.tools      |              testsuite              
------------------------------------+---------------------+----------+-------------------------------------------------------+----------------------+--------------------+-------------------------------------
 nextflow                           |                     |          | https://salsa.debian.org/med-team/nextflow            |                      |                    | 
 capsule                            |                     |          |                                                       |                      |                    | 
 snakemake                          | all                 | main     | buster,bullseye,sid                                   | snakemake            | snakemake          | autopkgtest
 artic                              |                     |          |                                                       |                      |                    | 
 bcbio                              | all                 | main     | buster,bullseye,sid                                   | bcbio-nextgen        | bcbio-nextgen      | autopkgtest-pkg-python
 pigx-rnaseq                        |                     |          | https://salsa.debian.org/med-team/pigx-rnaseq         |                      |                    | 
 pigx-scrnaseq                      |                     |          |                                                       |                      |                    | 
 rosa                               |                     |          |                                                       |                      |                    | 
 scrnaseq                           |                     |          |                                                       |                      |                    | 
 shovill                            | amd64,arm64,ppc64el | main     | sid                                                   |                      |                    | 
 smartseq2                          |                     |          |                                                       |                      |                    | 
 viralcon                           |                     |          |                                                       |                      |                    | 
 nf-core                            |                     |          |                                                       |                      |                    | 
 abacas                             | all                 | main     | buster,bullseye,sid                                   |                      |                    | autopkgtest
 adamjava                           |                     |          |                                                       |                      |                    | 
 allelecount                        | amd64,arm64,ppc64el | main     | bullseye,sid                                          | cancerit-allelecount |                    | autopkgtest-pkg-perl
 python3-anndata                    |                     |          | new                                                   | anndata              |                    | 
 arvados                            |                     |          | https://salsa.debian.org/med-team/arvados             |                      |                    | 
 r-other-ascat                      | all                 | main     | bullseye,sid                                          | ascat                |                    | 
 assembly-stats                     | amd64,arm64,ppc64el | main     | bullseye,sid                                          | assembly-stats       |                    | autopkgtest
 atropos                            | amd64,arm64,ppc64el | main     | bullseye,sid                                          | atropos              | atropos            | 
 augustus                           | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | augustus             | AUGUSTUS           | autopkgtest
 bamkit                             | all                 | main     | bullseye,sid                                          |                      |                    | 
 bandage                            | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | bandage              | bandage            | 
 libbbhash-dev                      | amd64,arm64,ppc64el | main     | bullseye,sid                                          |                      |                    | autopkgtest
 bcftools                           | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | bcftools             | bcftools           | autopkgtest
 bedtools                           | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | biotools             | bedtools           | autopkgtest
 biobambam2                         | amd64,arm64,ppc64el | main     | sid                                                   | biobambam            | biobambam          | autopkgtest
 python3-biopython                  | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   |                      | Biopython          | autopkgtest
 ncbi-blast+                        | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | blast                | blast              | autopkgtest
 bowtie2                            | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | bowtie2              | bowtie2            | autopkgtest
 busco                              | all                 | main     | bullseye,sid                                          | busco                |                    | 
 bustools                           | amd64,arm64,ppc64el | main     | bullseye,sid                                          | bustools             | BUStools           | 
 busybee                            |                     |          |                                                       |                      |                    | 
 bwa                                | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | bwa                  | BWA                | autopkgtest
 canu                               | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | canu                 | CANU               | 
 cat-bat                            | amd64,arm64,ppc64el | main     | bullseye,sid                                          | cat                  |                    | 
 centrifuge                         | amd64               | main     | buster,bullseye,sid                                   | centrifuge           | Centrifuge         | 
 changeo                            | all                 | main     | buster,bullseye,sid                                   | changeo              |                    | autopkgtest-pkg-python
 r-bioc-complexheatmap              | all                 | main     | bullseye,sid                                          |                      |                    | autopkgtest, autopkgtest-pkg-r
 python3-cooler                     | all                 | main     | sid                                                   | cooler               |                    | autopkgtest
 cutadapt                           | all                 | main     | buster,bullseye,sid                                   | cutadapt             | cutadapt           | autopkgtest-pkg-python
 python3-cyvcf2                     | amd64,arm64         | main     | buster,bullseye,sid                                   | cyvcf2               |                    | autopkgtest-pkg-python
 dextractor                         | amd64,arm64,ppc64el | main     | bullseye,sid                                          |                      |                    | 
 diamond-aligner                    | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | diamond              | Diamond            | autopkgtest
 python3-deeptools                  | all                 | main     | bullseye,sid                                          | deeptools            | deeptools          | autopkgtest, autopkgtest-pkg-python
 r-bioc-degreport                   | all                 | main     | bullseye,sid                                          |                      |                    | autopkgtest, autopkgtest-pkg-r
 drop-seq-tools                     | all                 | main     | sid                                                   | dropseq_tools        |                    | autopkgtest
 r-bioc-edger                       | amd64,arm64,ppc64el | main     | bullseye,sid                                          | bioconductor-edger   | edger              | autopkgtest, autopkgtest-pkg-r
 fastp                              | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | fastp                |                    | autopkgtest
 fastqc                             | all                 | main     | buster,sid                                            | fastqc               | FastQC             | autopkgtest
 fieldbioinformatics                |                     |          | https://salsa.debian.org/med-team/fieldbioinformatics | arctic               |                    | 
 filtlong                           | amd64,arm64,ppc64el | main     | bullseye,sid                                          | filtlong             |                    | autopkgtest
 flappie                            |                     |          | https://salsa.debian.org/med-team/flappie             |                      |                    | 
 flash                              | amd64,arm64,ppc64el | main     | bullseye,sid                                          | flash                | flash              | autopkgtest
 flye                               |                     |          | https://salsa.debian.org/med-team/flye                | flye                 |                    | 
 freebayes                          | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | freebayes            | freebayes          | autopkgtest
 gatk                               |                     |          | https://salsa.debian.org/med-team/gatk                | gatk4                |                    | 
 python3-geneimpacts                | all                 | main     | bullseye,sid                                          | geneimpacts          |                    | autopkgtest, autopkgtest-pkg-python
 gffread                            | amd64,arm64,ppc64el | main     | bullseye,sid                                          | gffread              | gffread            | autopkgtest
 python3-gffutils                   | all                 | main     | buster,bullseye,sid                                   | gffutils             | GFFutils           | autopkgtest
 gindex                             |                     |          | https://salsa.debian.org/med-team/gindex              |                      |                    | 
 gjh-asl-json                       |                     |          |                                                       |                      |                    | 
 tigr-glimmer                       | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | glimmer              | glimmer            | autopkgtest
 grabix                             | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | grabix               |                    | autopkgtest
 graphmap2                          |                     |          | https://salsa.debian.org/med-team/graphmap2           | graphmap             |                    | 
 bio-guppy                          |                     |          |                                                       |                      |                    | 
 h5sparse                           |                     |          |                                                       |                      |                    | 
 hisat2                             | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | hisat2               | hisat2             | autopkgtest
 golang-github-biogo-hts-dev        | all                 | main     | buster,bullseye,sid                                   |                      |                    | autopkgtest-pkg-go
 r-bioc-htsfilter                   | all                 | main     | bullseye,sid                                          |                      |                    | autopkgtest, autopkgtest-pkg-r
 libhts-dev                         | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | htslib               |                    | autopkgtest
 python3-htseq                      | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | htseq                | htseq              | autopkgtest
 iitii                              | amd64               | main     | sid                                                   |                      |                    | autopkgtest
 python3-intake                     | amd64,arm64,ppc64el | main     | bullseye,sid                                          |                      |                    | 
 ivar                               | amd64,arm64         | main     | bullseye,sid                                          | ivar                 |                    | autopkgtest
 kallisto                           | amd64,arm64,ppc64el | main     | bullseye,sid                                          | kallisto             | kallisto           | autopkgtest
 kmc                                | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | kmc                  | KMC                | autopkgtest
 kraken2                            | amd64,arm64,ppc64el | main     | bullseye,sid                                          | kraken2              | kraken             | autopkgtest
 radiant                            | all                 | main     | buster,bullseye,sid                                   |                      | krona              | 
 lighter                            | amd64,arm64,ppc64el | main     | bullseye,sid                                          | lighter              |                    | 
 longshot                           |                     |          |                                                       |                      |                    | 
 r-cran-lsd                         | all                 | main     | bullseye,sid                                          | r-lsd                |                    | autopkgtest-pkg-r
 lumpy-sv                           | amd64,arm64,ppc64el | main     | sid                                                   | lumpy-sv             |                    | autopkgtest
 ncbi-magicblast                    |                     |          | https://salsa.debian.org/med-team/ncbi-magicblast     | magicblast           |                    | 
 manta                              |                     |          | https://salsa.debian.org/med-team/manta               | manta                |                    | 
 python3-mappy                      | amd64,arm64         | main     | sid                                                   | minimap2             |                    | autopkgtest
 marginalign                        |                     |          |                                                       |                      |                    | 
 mash                               | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | mash                 |                    | autopkgtest
 masurca                            |                     |          |                                                       |                      |                    | 
 mcaller                            |                     |          |                                                       |                      |                    | 
 mecat2                             |                     |          |                                                       |                      |                    | 
 medaka                             |                     |          |                                                       |                      |                    | 
 megahit                            |                     |          | new                                                   | megahit              |                    | 
 megalodon                          |                     |          |                                                       |                      |                    | 
 metabat                            | amd64               | main     | bullseye,sid                                          | metabat2             |                    | autopkgtest
 metaspades                         |                     |          |                                                       |                      |                    | 
 minia                              | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | minia                | minia              | autopkgtest
 minimap2                           | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | minimap2             |                    | autopkgtest
 minitour                           |                     |          |                                                       |                      |                    | 
 libmmap-allocator-dev              | amd64,arm64         | main     | bullseye,sid                                          |                      |                    | autopkgtest
 mmmulti                            |                     |          |                                                       |                      |                    | 
 mosdepth                           |                     |          | https://salsa.debian.org/med-team/mosdepth            | mosdepth             |                    | 
 multiqc                            | all                 | main     | bullseye,sid                                          | multiqc              | multiqc            | 
 muscle                             | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | muscle               | MUSCLE             | autopkgtest
 nanofilt                           | amd64,arm64,ppc64el | main     | bullseye,sid                                          | nanofilt             |                    | autopkgtest
 nanolyse                           |                     |          | new                                                   | nanolyse             |                    | 
 python3-nanomath                   | all                 | main     | bullseye,sid                                          |                      |                    | autopkgtest
 nanoplot                           |                     |          | https://salsa.debian.org/med-team/nanoplot            | nanoplot             |                    | 
 nanopolish                         | amd64,arm64         | main     | buster,bullseye,sid                                   | nanopolish           | nanopolish         | autopkgtest
 nanook                             | all                 | main     | buster,bullseye,sid                                   |                      | NanoOK             | autopkgtest
 nanoraw                            |                     |          |                                                       |                      |                    | 
 nanosv                             | all                 | main     | bullseye,sid                                          | nanosv               |                    | 
 python3-ncls                       | amd64,arm64,ppc64el | main     | bullseye,sid                                          |                      |                    | autopkgtest, autopkgtest-pkg-python
 ngmlr                              | amd64               | main     | bullseye,sid                                          | ngmlr                |                    | autopkgtest
 oncofuse                           |                     |          | https://salsa.debian.org/med-team/oncofuse            |                      |                    | 
 openstructure                      | amd64               | main     | bullseye,sid                                          |                      |                    | autopkgtest
 optitype                           |                     |          | https://salsa.debian.org/med-team/optitype            |                      |                    | 
 orca                               | all                 | main     | buster,bullseye,sid                                   |                      |                    | 
 python3-pairtools                  | amd64,arm64,ppc64el | main     | bullseye,sid                                          | pairtools            |                    | autopkgtest
 parallel-fastq-dump                | all                 | main     | sid                                                   | parallel-fastq-dump  |                    | 
 python3-pauvre                     | all                 | main     | bullseye,sid                                          |                      |                    | autopkgtest
 picard-tools                       | amd64               | main     | buster,sid                                            | picard               | Picard_tools       | autopkgtest
 picopore                           | all                 | main     | sid                                                   | picopore             |                    | autopkgtest-pkg-python
 pinfish                            |                     |          |                                                       |                      |                    | 
 plasmidid                          |                     |          | new                                                   | plasmidid            |                    | 
 pilon                              | all                 | main     | buster,sid                                            | pilon                | pilon              | autopkgtest
 pomoxis                            |                     |          |                                                       |                      |                    | 
 pore                               |                     |          |                                                       |                      |                    | 
 pore-c                             |                     |          |                                                       |                      |                    | 
 porechop                           | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | porechop             |                    | autopkgtest
 porejuicer                         |                     |          |                                                       |                      |                    | 
 poretools                          | all                 | main     | buster,bullseye,sid                                   | poretools            |                    | autopkgtest
 pplacer                            | amd64,arm64,ppc64el | main     | bullseye,sid                                          | pplacer              |                    | 
 presto                             | all                 | main     | bullseye,sid                                          | presto               | pRESTO             | autopkgtest-pkg-python
 prinseq-lite                       | all                 | main     | bullseye,sid                                          |                      |                    | autopkgtest
 prodigal                           | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | prodigal             |                    | autopkgtest
 prokka                             | all                 | main     | sid                                                   | prokka               | prokka             | autopkgtest
 pybedtools-bin                     | all                 | main     | buster,bullseye,sid                                   | pybedtools           | pybedtools         | autopkgtest-pkg-python
 python3-pychopper                  | all                 | main     | bullseye,sid                                          |                      |                    | autopkgtest-pkg-python
 pycoqc                             | all                 | main     | bullseye,sid                                          | pycoqc               |                    | 
 pyomo                              |                     |          |                                                       |                      |                    | 
 pyranges                           |                     |          |                                                       |                      |                    | 
 python3-pysam                      | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | pysam                | pysam              | autopkgtest, autopkgtest-pkg-python
 python3-vcf                        | amd64,arm64,ppc64el | main     | bullseye,sid                                          | pyvcf                |                    | autopkgtest, autopkgtest-pkg-python
 qcat                               | all                 | main     | bullseye,sid                                          | qcat                 |                    | autopkgtest
 qmean                              |                     |          |                                                       |                      |                    | 
 qsignature                         |                     |          |                                                       |                      |                    | 
 qualimap                           |                     |          | https://salsa.debian.org/med-team/qualimap            | qualimap             |                    | 
 quast                              |                     |          | https://salsa.debian.org/med-team/quast               | quast                |                    | 
 r-cran-alakazam                    | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   |                      |                    | autopkgtest-pkg-r
 r-cran-shazam                      | all                 | main     | buster,bullseye,sid                                   | r-shazam             |                    | autopkgtest-pkg-r
 r-cran-tigger                      | all                 | main     | buster,bullseye,sid                                   | r-tigger             |                    | autopkgtest-pkg-r
 readucks                           | all                 | main     | bullseye,sid                                          |                      |                    | autopkgtest
 r-bioc-rsamtools                   | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   |                      |                    | autopkgtest, autopkgtest-pkg-r
 sailfish                           |                     |          | https://salsa.debian.org/med-team/sailfish            |                      |                    | 
 salmon                             | amd64               | main     | buster,bullseye,sid                                   | salmon               | salmon             | 
 sambamba                           | amd64,arm64         | main     | bullseye,sid                                          | sambamba             | Sambamba           | 
 samblaster                         | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | samblaster           | SAMBLASTER         | 
 samclip                            | all                 | main     | bullseye,sid                                          | samclip              |                    | autopkgtest
 samtools                           | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | samtools             | samtools           | autopkgtest
 scrappie                           | amd64               | main     | sid                                                   | scrappie             |                    | 
 scribl                             |                     |          |                                                       |                      |                    | 
 sepp                               |                     |          | https://salsa.debian.org/med-team/sepp                | sepp                 |                    | 
 python3-seqcluster                 |                     |          | https://salsa.debian.org/med-team/python-seqcluster   |                      |                    | 
 seqlib                             |                     |          |                                                       |                      |                    | 
 seqkit                             |                     |          |                                                       |                      |                    | 
 seqtk                              | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | seqtk                | seqtk              | autopkgtest
 seqwish                            |                     |          | https://salsa.debian.org/med-team/seqwish             | seqwish              |                    | 
 signalalign                        |                     |          | https://salsa.debian.org/med-team/signalalign         |                      |                    | 
 shasta                             |                     |          |                                                       |                      |                    | 
 skesa                              | amd64               | main     | bullseye,sid                                          | skesa                |                    | 
 sniffles                           | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | sniffles             | sniffles           | autopkgtest
 snpeff                             |                     |          | https://salsa.debian.org/med-team/snpeff              | snpeff               |                    | 
 snpsift                            |                     |          | https://salsa.debian.org/med-team/snpeff              | snpeff               |                    | 
 spades                             | amd64               | main     | buster,bullseye,sid                                   | spades               | Spades             | autopkgtest
 spoa                               | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | spoa                 |                    | autopkgtest
 sra-toolkit                        | amd64               | main     | buster,bullseye,sid                                   | sra-tools            | sra-tools          | autopkgtest
 rna-star                           | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | star                 | star               | autopkgtest
 streamformatics                    |                     |          |                                                       |                      |                    | 
 strelka                            |                     |          | https://salsa.debian.org/med-team/strelka             | strelka              |                    | 
 python3-streamz                    | all                 | main     | bullseye,sid                                          |                      |                    | autopkgtest
 tabix                              | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | htslib               |                    | autopkgtest
 tiddit                             | amd64,arm64,ppc64el | main     | bullseye,sid                                          | tiddit               |                    | autopkgtest
 tombo                              | amd64,arm64         | main     | sid                                                   | ont-tombo            |                    | autopkgtest
 tophat-recondition                 | all                 | main     | bullseye,sid                                          |                      |                    | 
 trim-galore                        | all                 | main     | bullseye,sid                                          | trim-galore          |                    | autopkgtest
 trimmomatic                        | all                 | main     | buster,bullseye,sid                                   | trimmomatic          | Trimmomatic        | autopkgtest
 tulip                              |                     |          |                                                       |                      |                    | 
 umap-learn                         | all                 | main     | bullseye,sid                                          |                      |                    | autopkgtest
 unicycler                          | amd64               | main     | buster,sid                                            | unicycler            | unicycler          | autopkgtest
 varscan                            | amd64               | non-free | buster,bullseye,sid                                   | varscan              | varscan            | 
 vcfanno                            |                     |          | https://salsa.debian.org/med-team/vcfanno             | vcfanno              |                    | 
 golang-github-brentp-vcfgo-dev     | all                 | main     | bullseye,sid                                          |                      |                    | autopkgtest-pkg-go
 vcftools                           | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | vcftools             | vcftools           | autopkgtest
 velvet                             | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   | velvet               | velvet             | autopkgtest
 ensembl-vep                        |                     |          | https://salsa.debian.org/med-team/ensembl-vep         | ensembl-vep          |                    | 
 vg                                 | amd64               | main     | bullseye,sid                                          | vg                   |                    | autopkgtest
 vienna-rna                         | amd64               | non-free | sid                                                   |                      | vienna_rna_package | 
 vsearch                            | amd64,ppc64el       | main     | buster,bullseye,sid                                   | vsearch              | vsearch            | autopkgtest
 vt                                 | amd64,arm64,ppc64el | main     | bullseye,sid                                          | vt                   |                    | autopkgtest
 wham-align                         | amd64,arm64,ppc64el | main     | bullseye,sid                                          | wham                 | wham               | autopkgtest
 yanagiba                           | all                 | main     | bullseye,sid                                          |                      |                    | 
 yanosim                            | amd64,arm64,ppc64el | main     | sid                                                   |                      |                    | autopkgtest-pkg-python
 libargs-dev                        |                     |          | new                                                   |                      |                    | 
 libatomicqueue-dev                 |                     |          |                                                       |                      |                    | 
 libatomicbitvector-dev             | all                 | main     | bullseye,sid                                          |                      |                    | autopkgtest
 libconcurrentqueue-dev             |                     |          |                                                       |                      |                    | 
 tao-json                           |                     |          |                                                       |                      |                    | 
 python3-h5py                       | all                 | main     | buster,bullseye,sid                                   |                      |                    | autopkgtest
 python3-numpy                      | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   |                      |                    | autopkgtest
 python3-pandas                     | all                 | main     | buster,bullseye,sid                                   |                      |                    | autopkgtest
 python3-pyarrow                    |                     |          |                                                       |                      |                    | 
 python3-sklearn                    | all                 | main     | buster,bullseye,sid                                   |                      |                    | autopkgtest
 python3-toolz                      | all                 | main     | buster,bullseye,sid                                   |                      |                    | autopkgtest
 python3-tornado                    | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   |                      |                    | autopkgtest
 python3-tqdm                       | all                 | main     | buster,bullseye,sid                                   |                      |                    | 
 libxenium-dev                      | all                 | main     | sid                                                   |                      |                    | 
 xonsh                              | all                 | main     | buster,bullseye,sid                                   |                      |                    | autopkgtest
 golang-github-shenwei356-xopen-dev | all                 | main     | sid                                                   |                      |                    | autopkgtest-pkg-go
 python3-yaml                       | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                   |                      |                    | autopkgtest
(221 Zeilen)

