data_out.cc

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// ---------------------------------------------------------------------
//
// Copyright (C) 2017 - 2021 by the deal.II authors
//
// This file is part of the deal.II library.
//
// The deal.II library is free software; you can use it, redistribute
// it, and/or modify it under the terms of the GNU Lesser General
// Public License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.
// The full text of the license can be found in the file LICENSE.md at
// the top level directory of deal.II.
//
// ---------------------------------------------------------------------
 
#include <deal.II/particles/data_out.h>
#include <deal.II/particles/particle_handler.h>
 
// We use some exceptions declared in this header
#include <deal.II/numerics/data_out_dof_data.h>
 
DEAL_II_NAMESPACE_OPEN
 
namespace Particles
{
  template <int dim, int spacedim>
  void
  DataOut<dim, spacedim>::build_patches(
    const Particles::ParticleHandler<dim, spacedim> &particles,
    const std::vector<std::string> &                 data_component_names,
    const std::vector<DataComponentInterpretation::DataComponentInterpretation>
      &data_component_interpretations_)
  {
    Assert(
      data_component_names.size() == data_component_interpretations_.size(),
      ExcMessage(
        "When calling Particles::DataOut::build_patches with data component "
        "names and interpretations you need to provide as many data component "
        "names as interpretations. Provide the same name for components that "
        "belong to a single vector or tensor."));
 
    if ((data_component_names.size() > 0) &&
        (particles.n_locally_owned_particles() > 0))
      {
        Assert(
          particles.begin()->has_properties(),
          ExcMessage(
            "You called Particles::DataOut::build_patches with data component "
            "names and interpretations, but the particles do not seem to own "
            "any properties."));
 
        Assert(
          data_component_names.size() ==
            particles.begin()->get_properties().size(),
          ExcMessage(
            "When calling Particles::DataOut::build_patches with data component "
            "names and interpretations you need to provide as many data component "
            "names as the particles have properties."));
      }
 
    dataset_names.clear();
    dataset_names.emplace_back("id");
    dataset_names.insert(dataset_names.end(),
                         data_component_names.begin(),
                         data_component_names.end());
 
    data_component_interpretations.clear();
    data_component_interpretations.emplace_back(
      DataComponentInterpretation::component_is_scalar);
    data_component_interpretations.insert(
      data_component_interpretations.end(),
      data_component_interpretations_.begin(),
      data_component_interpretations_.end());
 
    const unsigned int n_property_components = data_component_names.size();
    const unsigned int n_data_components     = dataset_names.size();
 
    patches.resize(particles.n_locally_owned_particles());
 
    auto particle = particles.begin();
    for (unsigned int i = 0; particle != particles.end(); ++particle, ++i)
      {
        patches[i].vertices[0] = particle->get_location();
        patches[i].patch_index = i;
 
        // We have one more data components than dataset_names (the particle id)
        patches[i].data.reinit(n_data_components, 1);
 
        patches[i].data(0, 0) = particle->get_id();
 
        if (n_data_components > 1)
          {
            const ArrayView<double> properties = particle->get_properties();
            for (unsigned int property_index = 0;
                 property_index < n_property_components;
                 ++property_index)
              patches[i].data(property_index + 1, 0) =
                properties[property_index];
          }
      }
  }
 
 
 
  template <int dim, int spacedim>
  const std::vector<DataOutBase::Patch<0, spacedim>> &
  DataOut<dim, spacedim>::get_patches() const
  {
    return patches;
  }
 
 
 
  template <int dim, int spacedim>
  std::vector<std::string>
  DataOut<dim, spacedim>::get_dataset_names() const
  {
    return dataset_names;
  }
 
 
 
  template <int dim, int spacedim>
  std::vector<
    std::tuple<unsigned int,
               unsigned int,
               std::string,
               DataComponentInterpretation::DataComponentInterpretation>>
  DataOut<dim, spacedim>::get_nonscalar_data_ranges() const
  {
    std::vector<
      std::tuple<unsigned int,
                 unsigned int,
                 std::string,
                 DataComponentInterpretation::DataComponentInterpretation>>
      ranges;
 
    // Make sure the data structures were set up correctly. Since they
    // can only be filled by build_patches() above, they should have
    // been checked already.
    Assert(dataset_names.size() == data_component_interpretations.size(),
           ExcInternalError());
 
    // collect the ranges of particle data
    const unsigned int n_output_components =
      data_component_interpretations.size();
    unsigned int output_component = 0;
    for (unsigned int i = 0; i < n_output_components; /* i is updated below */)
      // see what kind of data we have here. note that for the purpose of the
      // current function all we care about is vector data
      switch (data_component_interpretations[i])
        {
          case DataComponentInterpretation::component_is_scalar:
            {
              // Just move component forward by one
              ++i;
              ++output_component;
 
              break;
            }
          case DataComponentInterpretation::component_is_part_of_vector:
            {
              // ensure that there is a continuous number of next space_dim
              // components that all deal with vectors
              Assert(
                i + spacedim <= n_output_components,
                Exceptions::DataOutImplementation::ExcInvalidVectorDeclaration(
                  i, dataset_names[i]));
              for (unsigned int dd = 1; dd < spacedim; ++dd)
                Assert(
                  data_component_interpretations[i + dd] ==
                    DataComponentInterpretation::component_is_part_of_vector,
                  Exceptions::DataOutImplementation::
                    ExcInvalidVectorDeclaration(i, dataset_names[i]));
 
              // all seems right, so figure out whether there is a common
              // name to these components. if not, leave the name empty and
              // let the output format writer decide what to do here
              std::string name = dataset_names[i];
              for (unsigned int dd = 1; dd < spacedim; ++dd)
                if (name != dataset_names[i + dd])
                  {
                    name = "";
                    break;
                  }
 
              // Finally add a corresponding range.
              //
              // This sort of logic is also explained in some detail in
              //   DataOut::build_one_patch().
              ranges.emplace_back(std::forward_as_tuple(
                output_component,
                output_component + spacedim - 1,
                name,
                DataComponentInterpretation::component_is_part_of_vector));
 
              // increase the 'component' counter by the appropriate amount,
              // same for 'i', since we have already dealt with all these
              // components
              output_component += spacedim;
              i += spacedim;
 
              break;
            }
 
          case DataComponentInterpretation::component_is_part_of_tensor:
            {
              const unsigned int size = spacedim * spacedim;
              // ensure that there is a continuous number of next
              // spacedim*spacedim components that all deal with tensors
              Assert(
                i + size <= n_output_components,
                Exceptions::DataOutImplementation::ExcInvalidTensorDeclaration(
                  i, dataset_names[i]));
              for (unsigned int dd = 1; dd < size; ++dd)
                Assert(
                  data_component_interpretations[i + dd] ==
                    DataComponentInterpretation::component_is_part_of_tensor,
                  Exceptions::DataOutImplementation::
                    ExcInvalidTensorDeclaration(i, dataset_names[i]));
 
              // all seems right, so figure out whether there is a common
              // name to these components. if not, leave the name empty and
              // let the output format writer decide what to do here
              std::string name = dataset_names[i];
              for (unsigned int dd = 1; dd < size; ++dd)
                if (name != dataset_names[i + dd])
                  {
                    name = "";
                    break;
                  }
 
              // Finally add a corresponding range.
              ranges.emplace_back(std::forward_as_tuple(
                output_component,
                output_component + size - 1,
                name,
                DataComponentInterpretation::component_is_part_of_tensor));
 
              // increase the 'component' counter by the appropriate amount,
              // same for 'i', since we have already dealt with all these
              // components
              output_component += size;
              i += size;
              break;
            }
 
          default:
            Assert(false, ExcNotImplemented());
        }
 
    return ranges;
  }
 
} // namespace Particles
 
#include "data_out.inst"
 
DEAL_II_NAMESPACE_CLOSE