# coords/Makefile.am
# 
# Copyright 2001, 2002, 2003, 2006, The University of York
# Author: Paul Emsley
# 
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published
# by the Free Software Foundation; either version 3 of the License, or (at
# your option) any later version.
# 
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
# General Public License for more details.
# 
# You should have received a copy of the GNU General Public License and
# the GNU Lesser General Public License along with this program; if not,
# write to the Free Software Foundation, Inc., 51 Franklin Street, MA
# 02110-1301, USA

lib_LTLIBRARIES=libcoot-coords.la

pkginclude_HEADERS =  Bond_lines.h Cartesian.h cos-sin.h \
	mmdb.hh mmdb-extras.h utils.h mmdb-crystal.h Bond_lines_ext.h \
	coot-close.hh phenix-geo.hh ramachandran-container.hh \
	loop-path.hh rotamer-container.hh graphical-bonds-container.hh \
	graphics-line.hh torus-description.hh rama-plot-phi-psi.hh \
	phi-psi-prob.hh ramachandran-validation.hh

pkgincludedir = $(includedir)/coot/coords

AM_CPPFLAGS = \
	-I$(top_srcdir)                      \
	$(ENHANCED_LIGAND_TOOLS_CPPFLAGS)    \
	$(RDKIT_CXXFLAGS) $(BOOST_CPPFLAGS)  \
	$(CLIPPER_CXXFLAGS) $(MMDB_CXXFLAGS)

AM_CXXFLAGS = \
	-DPKGDATADIR='"$(pkgdatadir)"' \
	-DXDATADIR='"$(datadir)"'       \
	$(COOT_WINDOWS_CFLAGS)

# other in merge:
# libcoot_coords_la_SOURCES = Bond_lines.cc Cartesian.cc cos-sin.cc \
# 		 mmdb-extras.cc utils.cc mmdb.cc mmdb-crystal.cc \
#		 Bond_lines_ext.cc coot-close.cc phenix-geo.cc phenix-geo-bonds.cc

libcoot_coords_la_SOURCES = Bond_lines.cc Cartesian.cc cos-sin.cc \
		 phenix-geo-bonds.cc mmdb-extras.cc utils.cc mmdb.cc mmdb-crystal.cc \
		 Bond_lines_ext.cc coot-close.cc phenix-geo.cc \
		 rotamer-markup.cc \
		 loop-path.cc rama-plot-phi-psi.cc phi-psi-prob.cc ramachandran-validation.cc


#   $(top_builddir)/ideal/libcoot-ideal.la not needed here I think

# we use rotamer probabilites, hence need libcoot-ligand
libcoot_coords_la_LIBADD = \
   $(top_builddir)/ligand/libcoot-ligand.la           \
   $(top_builddir)/coot-utils/libcoot-coord-utils.la  \
   $(top_builddir)/coot-utils/libcoot-coord-extras.la \
   $(top_builddir)/geometry/libcoot-geometry.la       \
   $(top_builddir)/mini-mol/libcoot-mini-mol.la       \
   $(top_builddir)/cootaneer/libcootaneer.la          \
   $(top_builddir)/lidia-core/libcoot-lidia-core.la   \
   $(top_builddir)/utils/libcoot-utils.la             \
   $(CLIPPER_LIBS) -lpthread


#   $(MMDB_LIBS) \
#   $(RDKIT_LIBS) $(BOOST_LDFLAGS) $(L_BOOST_PYTHON) $(PYTHON_LIBS) -lssl -lcrypto -lldap -lz

libcoot_coords_la_LDFLAGS = $(SHARED_LDFLAGS)

check_PROGRAMS = test-phenix-geo test-transform test-side-chain-densities

# wrong build order - coords depends on this directory (because it uses rotamer info)
# solve by changing the directory for test-side-chain-densities to be in coords

test_side_chain_densities_SOURCES = test-side-chain-densities.cc

test_side_chain_densities_LDADD = \
	$(top_builddir)/ligand/libcoot-ligand.la \
	$(top_builddir)/coot-utils/libcoot-map-utils.la \
	$(top_builddir)/coot-utils/libcoot-coord-utils.la \
	$(top_builddir)/coords/libcoot-coords.la        \
	$(top_builddir)/geometry/libcoot-geometry.la \
	$(top_builddir)/utils/libcoot-utils.la \
	$(CLIPPER_LIBS) $(MMDB_LIBS)

test_transform_SOURCES = test-transform.cc

test_transform_LDADD = libcoot-coords.la \
   $(MMDB_LIBS)

test_phenix_geo_SOURCES = test-phenix-geo.cc

test_phenix_geo_LDADD = libcoot-coords.la \
   $(top_builddir)/coot-utils/libcoot-coord-utils.la \
   $(top_builddir)/utils/libcoot-utils.la  \
   $(MMDB_LIBS)
