#include <time.h>
#include <stdio.h>
#include<string.h>
#include "cmor.h"
#include <stdlib.h>

void read_coords(alats, alons, plevs, bnds_lat, bnds_lon, lon, lat, lev)
double *alats, *alons;
int *plevs;
double *bnds_lat, *bnds_lon;
int lon, lat, lev;
{
    int i;

    for (i = 0; i < lon; i++) {
        alons[i] = i * 360. / lon;
        bnds_lon[2 * i] = (i - 0.5) * 360. / lon;
        bnds_lon[2 * i + 1] = (i + 0.5) * 360. / lon;
    };

    for (i = 0; i < lat; i++) {
        alats[i] = (lat - i) * 10;
        bnds_lat[2 * i] = (lat - i) * 10 + 5.;
        bnds_lat[2 * i + 1] = (lat - i) * 10 - 5.;
    };

    for (i = 0; i < lev; i++) {
        plevs[i] = (i + 1) * 100;
    }
}

void read_time(it, time, time_bnds)
int it;
double time[];
double time_bnds[];
{
    time[0] = (it - 0.5) * 30.;
    time_bnds[0] = (it - 1) * 30.;
    time_bnds[1] = it * 30.;

    time[0] = it;
    time_bnds[0] = it;
    time_bnds[1] = it + 1;

}

void read_3d_input_files(it, varname, field, n0, n1, n2)
int it, n0, n1, n2;
char *varname;
double field[];
{
    int i, j, k;
    float factor, offset;

    if (strcmp(varname, "CLOUD") == 0) {
        factor = 0.1;
        offset = -50.;
    } else if (strcmp(varname, "U") == 0) {
        factor = 1.;
        offset = 100.;
    } else if (strcmp(varname, "T") == 0) {
        factor = 0.5;
        offset = -150.;
    }

    for (k = 0; k < n2; k++) {
        for (j = 0; j < n1; j++) {
            for (i = 0; i < n0; i++) {
                field[k * (n0 * n1) + j * n0 + i] =
                  (k * 64 + j * 16 + i * 4 + it) * factor - offset;
            }
        }
    }
}

void read_2d_input_files(it, varname, field, n0, n1)
int it, n0, n1;
char *varname;
double field[];
{
    int i, j, k;
    double factor, offset;
    double tmp;

    if (strcmp(varname, "LATENT") == 0) {
        factor = 1.;
        offset = 120.;
    } else if (strcmp(varname, "TSURF") == 0) {
        factor = 2.0;
        offset = -230.;
    } else if (strcmp(varname, "SOIL_WET") == 0) {
        factor = 10.;
        offset = 0.;
    } else if (strcmp(varname, "PSURF") == 0) {
        factor = 1.;
        offset = -9.7e2;
    }

    for (j = 0; j < n0; j++) {
        for (i = 0; i < n1; i++) {
            tmp =
              ((double)j * 16. + (double)(i) * 4. + (double)it) * factor -
              offset;
            k = (n0 - 1 - j) * n1 + i;
            field[k] = tmp;
        }
    }
}

int main()
     /*
        /*   Purpose:   To serve as a generic example of an application that */
/*       uses the "Climate Model Output Rewriter" (CMOR) */
/*    CMOR writes CF-compliant netCDF files. */
/*    Its use is strongly encouraged by the IPCC and is intended for use  */
/*       by those participating in many community-coordinated standard  */
/*       climate model experiments (e.g., AMIP, CMIP, CFMIP, PMIP, APE, */
/*       etc.) */
/*   Background information for this sample code: */
/*      Atmospheric standard output requested by IPCC are listed in  */
/*   tables available on the web.  Monthly mean output is found in */
/*   tables A1a and A1c.  This sample code processes only two 3-d  */
/*   variables listed in table A1c ("monthly mean atmosphere 3-D data"  */
/*   and only four 2-d variables listed in table A1a ("monthly mean  */
/*   atmosphere + land surface 2-D (latitude, longitude) data").  The  */
/*   extension to many more fields is trivial. */
/*      For this example, the user must fill in the sections of code that  */
/*   extract the 3-d and 2-d fields from his monthly mean "history"  */
/*   files (which usually contain many variables but only a single time  */
/*   slice).  The CMOR code will write each field in a separate file, but  */
/*   many monthly mean time-samples will be stored together.  These  */
/*   constraints partially determine the structure of the code. */
/*   Record of revisions: */
/*       Date        Programmer(s)           Description of change */
/*       ====        ==========              ===================== */
/*      10/22/03     Rusty Koder              Original code */
/*       1/28/04     Les R. Koder             Revised to be consistent */
/*                                            with evolving code design */
{

    /*   dimension parameters: */
    /* --------------------------------- */
#define   ntimes  2             /* number of time samples to process */
#define   lon  4                /* number of longitude grid cells   */
#define   lat  3                /* number of latitude grid cells */
#define   lev  5                /* number of standard pressure levels */
#define   n2d  4       /* number of IPCC Table A1a fields to be */      /*     output. */
#define n3d 3                   /* number of IPCC Table A1c fields to  */
    /*                                be output.   */

    /*   Tables associating the user's variables with IPCC standard output  */
    /*   variables.  The user may choose to make this association in a  */
    /*   different way (e.g., by defining values of pointers that allow him  */
    /*   to directly retrieve data from a data record containing many  */
    /*   different variables), but in some way the user will need to map his  */
    /*   model output onto the Tables specifying the MIP standard output. */

    /* ---------------------------------- */

    /* My variable names for IPCC Table A1c fields */
    char varin3d[n3d][6] = { "CLOUD", "U", "T" };

    /* Units appropriate to my data */
    char units3d[n3d][6] = { "%", "m s-1", "K" };

    /* Corresponding IPCC Table A1c entry (variable name)  */
    char entry3d[n3d][3] = { "cl", "ua", "ta" };

    /* My variable names for IPCC Table A1a fields */
    char varin2d[n2d][9] = { "LATENT", "TSURF", "SOIL_WET", "PSURF" };

    /* Units appropriate to my data */
    char units2d[n2d][7] = { "W m-2", "K", "kg m-2", "Pa" };

    char positive2d[n2d][4] = { "down", " ", " ", " " };

    /* Corresponding IPCC Table A1a entry (variable name)  */
    char entry2d[n2d][6] = { "hfls", "tas", "mrsos", "ps" };

/*  uninitialized variables used in communicating with CMOR: */
/*  --------------------------------------------------------- */

    int error_flag;
    int znondim_id, zfactor_id;
    int var2d_ids[n2d];
    int var3d_ids[n3d];
    double data2d[lat * lon];
    double data3d[lev * lat * lon];
    double alats[lat];
    double alons[lon];
    int ilats[lat];
    int ilons[lon];
    double plevs[lev];
    int iplevs[lev];
    long lplevs[lev];
    float fplevs[lev];
    double Time[2];
    double bnds_time[4];
    double bnds_lat[lat * 2];
    double bnds_lon[lon * 2];
    double zlevs[lev];
    double zlev_bnds[lev + 1];

    double a_coeff[lev] = { 0.1, 0.2, 0.3, 0.22, 0.1 };
    double b_coeff[lev] = { 0.0, 0.1, 0.2, 0.5, 0.8 };
    float p0 = 1.e5;
    double a_coeff_bnds[lev + 1] = { 0., .15, .25, .25, .16, 0. };
    double b_coeff_bnds[lev + 1] = { 0., .05, .15, .35, .65, 1. };
    int ilon, ilat, ipres, ilev, itim;
    double dtmp, dtmp2;

    /*  Other variables: */
    /*  --------------------- */

    int it, m, i, ierr, j = 400;
    int myaxes[410];
    int myaxes2[410];
    int myvars[400];
    char id[CMOR_MAX_STRING];
    char units[CMOR_MAX_STRING];
    char interval[CMOR_MAX_STRING];
    char anames[25][CMOR_MAX_STRING];
    char type;
    char regions[5][16] =
      { "atlantic_ocean", "indian_ocean", "pacific_ocean", "global_ocean",
"sf_bay" };
    double timestest[5];
    /* Externals funcs */
    int tables[5];
    char msg[555];
    double bt = 0.;
    /* ================================ */
    /*  Execution begins here: */
    /* ================================ */

    /* Read coordinate information from model into arrays that will be passed  */
    /*   to CMOR. */
    /* Read latitude, longitude, and pressure coordinate values into  */
    /*   alats, alons, and plevs, respectively.  Also generate latitude and  */
    /*   longitude bounds, and store in bnds_lat and bnds_lon, respectively. */
    /*   Note that all variable names in this code can be freely chosen by */
    /*   the user. */

    /*   The user must write the subroutine that fills the coordinate arrays  */
    /*   and their bounds with actual data.  The following line is simply a */
    /*   a place-holder for the user's code, which should replace it. */

    /*  *** possible user-written call *** */

    m = CMOR_EXIT_ON_MAJOR;
    j = CMOR_REPLACE;
    printf("ok mode is:%i\n", m);
    i = 0;
    ierr = cmor_setup(NULL, &j, NULL, &m, NULL, &i);

    read_coords(&alats[0], &alons[0], &iplevs[0], &bnds_lat[0], &bnds_lon[0],
                lon, lat, lev);
    int tmpmo[12];
    printf("Test code: ok init cmor\n");
    char c1[CMOR_MAX_STRING];
    char c2[CMOR_MAX_STRING];
    strcpy(c1, "GICCM1\0");
    strcpy(c2, "Nat, TO");

    printf("yep: %s, %s\n", c1, c2);
    ierr = cmor_dataset_json("Test/CMOR_input_TestTables.json");

    printf("Test code: ok load cmor table(s)\n");
    ierr = cmor_load_table("TestTables/CMIP6_Amon_json_hfls", &tables[0]);
    strcpy(id, "time");
    strcpy(units, "months since 1980");
    strcpy(interval, "1 month");
    j = 400;
    for (i = 0; i < j; i++) {
        read_time(0, &Time[0], &bnds_time[0]);
        read_time(1, &Time[1], &bnds_time[2]);
        sprintf(units, "months since %i", 1900 + i);
        ierr =
          cmor_axis(&myaxes[i], id, units, ntimes, &Time[0], 'd', &bnds_time[0],
                    2, interval);
    }

    strcpy(id, "latitude");
    strcpy(units, "degrees_north");
    strcpy(interval, "");
    ierr =
      cmor_axis(&myaxes[j], id, units, lat, &alats, 'd', &bnds_lat, 2,
                interval);
    strcpy(id, "longitude");
    strcpy(units, "degrees_east");
    ierr =
      cmor_axis(&myaxes[j + 1], id, units, lon, &alons, 'd', &bnds_lon, 2,
                interval);

    dtmp = -999;
    dtmp2 = 1.e-4;
    myaxes2[1] = myaxes[j];
    myaxes2[2] = myaxes[j + 1];

    printf("Test code: defining variables from table 1, %s\n", positive2d[0]);
    for (i = 0; i < j; i++) {
        myaxes2[0] = myaxes[i];
        sprintf(id, "hfls%i", i);
        ierr =
          cmor_variable(&myvars[i], id, units2d[0], 3, myaxes2, 'd', NULL,
                        &dtmp2, &positive2d[0][0], varin2d[0], "no history",
                        "no future");
    }

    for (m = 0; m < j; m++) {
        for (i = 0; i < ntimes; i++) {
            printf("Test code: writing time: %i of %i\n", i + 1, ntimes);
            printf("2d\n");
            read_2d_input_files(i, varin2d[0], &data2d, lat, lon);
            sprintf(id, "%i", i);
            /*     ierr = cmor_write(myvars[0],&data2d,'d',id,1,&time,&bnds_time,NULL); */
            /*     read_3d_input_files(i, varin3d[2], &data3d,lev,lat,lon); */
            /*     ierr = cmor_write(myvars[1],&data3d,'d',id,1,&time,&bnds_time,NULL); */
            /*     read_3d_input_files(i, varin3d[0], &data3d,5,lat,lon); */
            /*     ierr = cmor_write(myvars[2],&data3d,'d',id,1,&time,&bnds_time,NULL); */
            /*     read_2d_input_files(i, varin2d[3], &data2d,lat,lon); */
            /*     ierr = cmor_write(myvars[3],&data2d,'d',id,1,&time,&bnds_time,&myvars[2]); */
            printf("ok writing time %i for variable %i\n", i, m);
            ierr = cmor_write(myvars[m], &data2d, 'd', NULL, 1, NULL, NULL, NULL);
        }
        ierr = cmor_close_variable(myvars[m], NULL, NULL);
    }
    ierr = cmor_close();
    return (0);
}
