Package org.biojava.nbio.structure.io.cif

Class AbstractCifFileSupplier.WrappedAtom

java.lang.Object

org.biojava.nbio.structure.io.cif.AbstractCifFileSupplier.WrappedAtom

Enclosing class:

AbstractCifFileSupplier<S>

public static class AbstractCifFileSupplier.WrappedAtom
extends java.lang.Object

Wrapped atoms represent individual atoms enriched with model- and chain-level information. Also, gives control over the atomId field. Useful to convert structures (and subsets thereof) to their mmCIF representation.

Constructor Summary

Constructors

Constructor	Description
WrappedAtom(int model, java.lang.String chainName, java.lang.String chainId, Atom atom, int atomId)	Construct a new atoms.

Method Summary

Modifier and Type	Method	Description
Atom	getAtom()
int	getAtomId()
java.lang.String	getChainId()
java.lang.String	getChainName()
int	getModel()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

WrappedAtom

public WrappedAtom(int model,
                   java.lang.String chainName,
                   java.lang.String chainId,
                   Atom atom,
                   int atomId)

Construct a new atoms.

Parameters:

model - the model number

chainName - the label_asym_id

chainId - the auth_asym_id

atom - the atom instance itself

atomId - the label_atom_id

Method Detail

getModel

public int getModel()

getChainName

public java.lang.String getChainName()

getChainId

public java.lang.String getChainId()

getAtom

public Atom getAtom()

getAtomId

public int getAtomId()