DefaultAAIndexProvider (biojava 6.0.5 API)

java.lang.Object
- org.biojava.nbio.core.alignment.matrices.DefaultAAIndexProvider

All Implemented Interfaces:

AAIndexProvider
```
public class DefaultAAIndexProvider
extends java.lang.Object
implements AAIndexProvider
```
The default provider for AAINDEX loads substitution matrices from the AAINDEX file in the resources directory

Author:

Andreas Prlic

Constructor Summary

Constructors
Constructor Description

DefaultAAIndexProvider()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`java.io.InputStream`	`getInputStreamToAAindexFile()`
`SubstitutionMatrix<AminoAcidCompound>`	`getMatrix(java.lang.String matrixName)`	Gets a substitution matrix by its name.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - DefaultAAIndexProvider
```
public DefaultAAIndexProvider()
```
- Method Detail
  - getMatrix
```
public SubstitutionMatrix<AminoAcidCompound> getMatrix(java.lang.String matrixName)
```
    Description copied from interface: AAIndexProvider
    
    Gets a substitution matrix by its name. The matrices are defined in src/main/resources/matrices/AAINDEX.txt
    
    Specified by:
    
    getMatrix in interface AAIndexProvider
    
    Returns:
    
    The @{code}SubstitutionMatrix or null if not exists
  - getInputStreamToAAindexFile
```
public java.io.InputStream getInputStreamToAAindexFile()
```